pre-commit-config.covidwa.yaml

# Python oriented pre-commit
#
# Note that the check-yaml argument does not work
#
# so only single document in a yaml file is allowed
# tried dockerfilelint but too strict and disabling does not work
---
# python regex syntax for includsion
# https://www.w3schools.com/python/python_regex.asp
# files: ".py$"
# This is only for python and other files
exclude: "typescript|golang"

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v3.3.0
    hooks:
      - id: check-added-large-files
      - id: check-case-conflict
      - id: check-builtin-literals
      - id: check-executables-have-shebangs
      - id: check-json
      - id: check-merge-conflict
      - id: check-yaml
        args: [--allow-multiple-documents]
      - id: check-symlinks
      - id: check-toml
      - id: detect-aws-credentials
      - id: detect-private-key
      - id: end-of-file-fixer
      - id: mixed-line-ending
      - id: trailing-whitespace

  - repo: https://github.com/jumanjihouse/pre-commit-hooks
    # temp fix for pre-commit breakage in shellcheck
    # https://github.com/jumanjihouse/pre-commit-hooks/issues/82
    rev: 2.1.5
    hooks:
      # as of Feb 2020, error with ruby 3.0
      # https://github.com/jumanjihouse/pre-commit-hooks/issues/86
      #- id: markdownlint
      - id: shellcheck
      # require shfmt be installed
      - id: shfmt

  # from dan this fails with a go error
  #- repo: local
    #hooks:
      #- id: shfmt
        #name: shfmt
        #minimum_pre_commit_version: 2.4.0
        #language: golang
        #additional_dependencies: [mvdan.cc/sh/v3/cmd/shfmt@v3.2.2]
        #entry: shfmt
        #args: [ -w ]
        #types: [ shell ]

  # covidwa does not have of these standards so comment out

  # https://ljvmiranda921.github.io/notebook/2018/06/21/precommits-using-black-and-flake8/
  # https://github.com/pre-commit/mirrors-mypy
  #- repo: https://github.com/pre-commit/mirrors-mypy
  #  #rev: 'v0.782' will not run as of Feb 2020
  #  rev: v0.812
  #  hooks:
  #    - id: mypy
  #- repo: https://github.com/pycqa/flake8
  #  rev: 3.8.4
  #  hooks:
  #    - id: flake8
  # covidwa not using pydocstyle
  #- repo: https://github.com/pycqa/pydocstyle
  #  rev: 5.1.1
  #  hooks:
  #    - id: pydocstyle

  ## puts the isort.cfg at the root we do not want that
  ## https://pypi.org/project/seed-isort-config/
  ## - repo: https://github.com/asottile/seed-isort-config
  ##   rev: v2.2.0
  ##   hooks:
  ##     # remember this will place things at the root of the repo
  ##     # but running in lint locally places it in the current directory
  ##    - id: seed-isort-config
  ## does not respect the local arguments
  ## - repo: https://github.com/timothycrosley/isort
  ##   rev: 5.2.0
  ##   hooks:
  ##     - id: isort
  ##       args: [--profile=black, -w 79]
  ## https://ljvmiranda921.github.io/notebook/2018/06/21/precommits-using-black-and-flake8/

  #- repo: https://github.com/psf/black
  #  rev: 20.8b1
  #  hooks:
  #    - id: black
  #      language_version: python3.9
  #      args: [-l 79]
  # check shell scripts you check in
  - repo: git://github.com/detailyang/pre-commit-shell
    rev: v1.0.6
    hooks:
      - id: shell-lint
        args: [--format=json]

  # https://stackoverflow.com/questions/64011304/running-pytest-as-a-pre-commit-hook-no-such-file-or-directory-issue
  # note this means pre-commit should run in your venv or conda
  - repo: local
    hooks:
      # check the current working directory run by calling the id
      #- id: testing
      #  # the friendly name
      #  name: Test Local
      #  # this has to be a single executable so use bash -c to run scripts
      #  entry: bash -c "cd python && pwd"
        #language: system
        #verbose: true
        #pass_filenames: false
        #always_run: true
      - id: pytest
        name: Python Linting
        entry: bash -c "cd python && pytest --timeout=600 --ignore=lambda_stage --doctest-modules --cov=."
        #args: [--timeout=600, --ignore=lambda_stage, --doctest-modules, --cov=.]
        language: system
        pass_filenames: false
        always_run: true
        verbose: true