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When computing the stats for a multifasta file, the field "Min Contig:" shows the length of the last contig, not the smallest one.
~/bin/sequence-stats -a assembly_MAIOR_QUE_100K.fasta Sample: assembly_MAIOR_QUE_100K.fasta Genome(bp): 248306121 Contigs: 1104 GC(%): 45.64 A(%): 27.18 T(%): 27.17 G(%): 22.81 C(%): 22.83 N50: 261916 Max Contig: 402137 Min Contig: 349401 N count: 0 N(%): 0 Gap(-): 0 Uncertain(bp): 0
~/bin/sequence-stats -c assembly_MAIOR_QUE_100K.fasta | tail contig_9766 117494 contig_9805 199014 contig_9816 106145 contig_9878 116378 contig_9886 250030 contig_991 101688 contig_9941 381455 contig_9951 145570 contig_9955 343603 contig_9982 349401
The text was updated successfully, but these errors were encountered:
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When computing the stats for a multifasta file, the field "Min Contig:" shows the length of the last contig, not the smallest one.
~/bin/sequence-stats -a assembly_MAIOR_QUE_100K.fasta
Sample: assembly_MAIOR_QUE_100K.fasta
Genome(bp): 248306121
Contigs: 1104
GC(%): 45.64
A(%): 27.18
T(%): 27.17
G(%): 22.81
C(%): 22.83
N50: 261916
Max Contig: 402137
Min Contig: 349401
N count: 0
N(%): 0
Gap(-): 0
Uncertain(bp): 0
~/bin/sequence-stats -c assembly_MAIOR_QUE_100K.fasta | tail
contig_9766 117494
contig_9805 199014
contig_9816 106145
contig_9878 116378
contig_9886 250030
contig_991 101688
contig_9941 381455
contig_9951 145570
contig_9955 343603
contig_9982 349401
The text was updated successfully, but these errors were encountered: