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-a option shows incorrect data. #2

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Felipowisky opened this issue Jul 6, 2023 · 0 comments
Open

-a option shows incorrect data. #2

Felipowisky opened this issue Jul 6, 2023 · 0 comments

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@Felipowisky
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When computing the stats for a multifasta file, the field "Min Contig:" shows the length of the last contig, not the smallest one.

~/bin/sequence-stats -a assembly_MAIOR_QUE_100K.fasta
Sample: assembly_MAIOR_QUE_100K.fasta
Genome(bp): 248306121
Contigs: 1104
GC(%): 45.64
A(%): 27.18
T(%): 27.17
G(%): 22.81
C(%): 22.83
N50: 261916
Max Contig: 402137
Min Contig: 349401
N count: 0
N(%): 0
Gap(-): 0
Uncertain(bp): 0

~/bin/sequence-stats -c assembly_MAIOR_QUE_100K.fasta | tail
contig_9766 117494
contig_9805 199014
contig_9816 106145
contig_9878 116378
contig_9886 250030
contig_991 101688
contig_9941 381455
contig_9951 145570
contig_9955 343603
contig_9982 349401

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