{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":726835218,"defaultBranch":"main","name":"hatchet2-simulations","ownerLogin":"raphael-group","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-12-03T14:46:15.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/5168500?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712065325.0","currentOid":""},"activityList":{"items":[{"before":"47318261f1c3c1459c673b99012a59e214eed41c","after":null,"ref":"refs/tags/mirrored-v1.1","pushedAt":"2024-04-02T13:41:21.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"}},{"before":"1c74f9e1062494dd33b0325ff5609115e96c8ba6","after":null,"ref":"refs/tags/mirrored","pushedAt":"2024-04-02T13:40:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"}},{"before":"47318261f1c3c1459c673b99012a59e214eed41c","after":"48c7dd6b4da253a43bc330a8b63c0b671e42e6ec","ref":"refs/heads/main","pushedAt":"2024-04-02T13:40:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"clean up manifests and misc files","shortMessageHtmlLink":"clean up manifests and misc files"}},{"before":"1c74f9e1062494dd33b0325ff5609115e96c8ba6","after":"47318261f1c3c1459c673b99012a59e214eed41c","ref":"refs/heads/main","pushedAt":"2024-04-02T00:48:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Update mirrored AASAPGP so that it can achieve a value of 0","shortMessageHtmlLink":"Update mirrored AASAPGP so that it can achieve a value of 0"}},{"before":null,"after":"b1b0cad4d140cb393db5b77735145a0f219715bb","ref":"refs/heads/purity-sims","pushedAt":"2024-04-01T23:18:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Manifest used for purity simulations","shortMessageHtmlLink":"Manifest used for purity simulations"}},{"before":"20eba326790a062b035063304cab44ffec23eece","after":"1c74f9e1062494dd33b0325ff5609115e96c8ba6","ref":"refs/heads/main","pushedAt":"2024-04-01T23:17:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"update error computation and adjust hatchet2 minK","shortMessageHtmlLink":"update error computation and adjust hatchet2 minK"}},{"before":"a096bcf6b1ca8243c7271be1013ba46d6544c95a","after":"20eba326790a062b035063304cab44ffec23eece","ref":"refs/heads/main","pushedAt":"2024-03-27T01:51:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"v7 changes: update mirrored metric, h2 param, paths","shortMessageHtmlLink":"v7 changes: update mirrored metric, h2 param, paths"}},{"before":"4be94f760492c90bea148c7bcacc4b31b468f790","after":"a096bcf6b1ca8243c7271be1013ba46d6544c95a","ref":"refs/heads/main","pushedAt":"2024-03-27T00:49:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"fix diploid and tetraploid to truth","shortMessageHtmlLink":"fix diploid and tetraploid to truth"}},{"before":"f722d114a7d695cb9c73cbb93057b911b6ae9e55","after":"4be94f760492c90bea148c7bcacc4b31b468f790","ref":"refs/heads/main","pushedAt":"2024-03-26T00:57:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"mirrored v6: fix diploid vs tetraploid","shortMessageHtmlLink":"mirrored v6: fix diploid vs tetraploid"}},{"before":"82c4d77cc3ee542253e30b98bc3c406c3b1ea71c","after":"f722d114a7d695cb9c73cbb93057b911b6ae9e55","ref":"refs/heads/main","pushedAt":"2024-03-25T02:05:09.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"settings for mirrored 4","shortMessageHtmlLink":"settings for mirrored 4"}},{"before":"b1b0cad4d140cb393db5b77735145a0f219715bb","after":"82c4d77cc3ee542253e30b98bc3c406c3b1ea71c","ref":"refs/heads/main","pushedAt":"2024-03-24T02:07:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"sample chromosome bugfix, update for mirrored sims","shortMessageHtmlLink":"sample chromosome bugfix, update for mirrored sims"}},{"before":"d772d2685f62bd626697dfc1a8b1ae0002502bf4","after":"b1b0cad4d140cb393db5b77735145a0f219715bb","ref":"refs/heads/main","pushedAt":"2024-01-12T20:34:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Manifest used for purity simulations","shortMessageHtmlLink":"Manifest used for purity simulations"}},{"before":"8afdc89fdd83ddde0f961e5d0e20eb8e0c2c53c6","after":"d772d2685f62bd626697dfc1a8b1ae0002502bf4","ref":"refs/heads/main","pushedAt":"2024-01-12T12:55:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Create LICENSE","shortMessageHtmlLink":"Create LICENSE"}},{"before":"6274ae9cefe29cb05462acf1366bf82bca1065e3","after":"8afdc89fdd83ddde0f961e5d0e20eb8e0c2c53c6","ref":"refs/heads/main","pushedAt":"2024-01-12T12:54:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"1b011ee365284e3865e2620127833409609f7573","after":"6274ae9cefe29cb05462acf1366bf82bca1065e3","ref":"refs/heads/main","pushedAt":"2024-01-12T12:44:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Change parameters and support different sim IDs","shortMessageHtmlLink":"Change parameters and support different sim IDs"}},{"before":"01f0d34c74e1fbbf11bbffa6003fc59aae332a63","after":"1b011ee365284e3865e2620127833409609f7573","ref":"refs/heads/main","pushedAt":"2024-01-02T03:48:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Add smoothing procedure to genome simulation","shortMessageHtmlLink":"Add smoothing procedure to genome simulation"}},{"before":"ea5004a37b844fafbf1a82e35fadd41ad63231da","after":"01f0d34c74e1fbbf11bbffa6003fc59aae332a63","ref":"refs/heads/main","pushedAt":"2024-01-01T17:54:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Add benchmarking directive","shortMessageHtmlLink":"Add benchmarking directive"}},{"before":"fd5e0e848b5f3d77326043a453d3a2376109aa7a","after":"ea5004a37b844fafbf1a82e35fadd41ad63231da","ref":"refs/heads/main","pushedAt":"2024-01-01T17:53:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Try more sims with slightly better genomes","shortMessageHtmlLink":"Try more sims with slightly better genomes"}},{"before":"68d206e187946d724e298a7eca7573a974c71897","after":"fd5e0e848b5f3d77326043a453d3a2376109aa7a","ref":"refs/heads/main","pushedAt":"2023-12-28T16:20:50.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"debug and add analysis script","shortMessageHtmlLink":"debug and add analysis script"}},{"before":"cf63bcb1ef664f9893f021a7dbcaf9eeb7179aab","after":"68d206e187946d724e298a7eca7573a974c71897","ref":"refs/heads/main","pushedAt":"2023-12-15T17:13:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"bugfiX: add gurobi module load","shortMessageHtmlLink":"bugfiX: add gurobi module load"}},{"before":"27bfde62ae1e381d1366177e80f5fc5c2cf65448","after":"cf63bcb1ef664f9893f021a7dbcaf9eeb7179aab","ref":"refs/heads/main","pushedAt":"2023-12-14T20:05:07.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Add more parameters to ini files, swap to cpp solver","shortMessageHtmlLink":"Add more parameters to ini files, swap to cpp solver"}},{"before":"8137ee6f40f53090bc5cfbdb6ae772ad7ae76455","after":"27bfde62ae1e381d1366177e80f5fc5c2cf65448","ref":"refs/heads/main","pushedAt":"2023-12-13T16:22:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Add rules to run methods, update config files, debug","shortMessageHtmlLink":"Add rules to run methods, update config files, debug"}},{"before":"e604b026d904f2593f399f81ca17ff6b89aef13b","after":"8137ee6f40f53090bc5cfbdb6ae772ad7ae76455","ref":"refs/heads/main","pushedAt":"2023-12-07T20:40:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Implement simulations","shortMessageHtmlLink":"Implement simulations"}},{"before":"29c27a3d030e3525c9e115bf832b5db38b3d146d","after":"e604b026d904f2593f399f81ca17ff6b89aef13b","ref":"refs/heads/main","pushedAt":"2023-12-03T14:47:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Initial commit of empty files","shortMessageHtmlLink":"Initial commit of empty files"}},{"before":null,"after":"29c27a3d030e3525c9e115bf832b5db38b3d146d","ref":"refs/heads/main","pushedAt":"2023-12-03T14:46:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mmyers1","name":"Matt Myers","path":"/mmyers1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8814229?s=80&v=4"},"commit":{"message":"Initial commit","shortMessageHtmlLink":"Initial commit"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEJZYBQQA","startCursor":null,"endCursor":null}},"title":"Activity ยท raphael-group/hatchet2-simulations"}