Does Quarto and Nextflow work together? #7120
Replies: 2 comments 5 replies
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It really depends on what the components of your project will be. Overall, I don't see any constraints or using Quarto and Nextflow, but as with any workflow manager, you have to think about how you are going to make this happen. One of the main focus of Quarto is reproducibility. Symbolic links are basically against that idea. |
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did you get this to work? (I think I am in the same boat. Want to use Quarto notebooks to capture individual pipelines then looking for an orchestrator for these individual pipelines either snakemake or nextflow.) |
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Description
Hi all,
I have been trying to use Quarto in a very peculiar way. I am using Quarto to produce reports in a Nextflow pipeline, i.e., every task is done either using R or Python through Quarto and then I get a task-specific HTML report. At this level, it is a pretty straightforward strategy, and works just fine :)
However, I would like to step further and create an entire website based on these reports. I am trying to figure out a nice way to do it, for instance, leveraging the freeze + caching from Quarto. Once I don't want to recompute things.
Any thoughts would be highly appreciated.
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