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Mobility of Precursor of MS2 in data model #277

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mwang87 opened this issue Aug 27, 2021 · 1 comment
Open

Mobility of Precursor of MS2 in data model #277

mwang87 opened this issue Aug 27, 2021 · 1 comment
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Improvement extend functionality

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@mwang87
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mwang87 commented Aug 27, 2021

Is your feature request related to a problem? Please describe.
When I have an MS2 with ion mobility specified in the precursor area, its not propogated.

Just a small snippet of mzML:

<selectedIonList count="1">
                <selectedIon>
                  <cvParam cvRef="PSI-MS" accession="MS:1000744" name="selected ion m/z" value="1222.001350924469" unitCvRef="PSI-MS" unitAccession="MS:1000040" unitName="m/z"/>
                  <cvParam cvRef="PSI-MS" accession="MS:1000042" name="peak intensity" value="109.0" unitCvRef="PSI-MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
                  <cvParam cvRef="PSI-MS" accession="MS:1000041" name="charge state" value="1"/>
                  <cvParam cvRef="PSI-MS" accession="MS:1001966" name="product ion mobility" value="1.3823230824661825"/>
                </selectedIon>
              </selectedIonList>

The key value is the "product ion mobility"

@MKoesters
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Hi,

Thanks for reporting this, I'll have a look as soon as I can!
Could you tell me which obo version you are using?

Best,
Manuel

@MKoesters MKoesters self-assigned this Aug 31, 2021
@MKoesters MKoesters added the bug issue that crashes pymzml or makes it unusable label Aug 31, 2021
@MKoesters MKoesters added Improvement extend functionality and removed bug issue that crashes pymzml or makes it unusable labels Nov 12, 2021
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