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@article{astropy,
    author = {{Astropy Collaboration}},
    title = "{Astropy: A community Python package for astronomy}",
    journal = {Astronomy and Astrophysics},
    archivePrefix = "arXiv",
    eprint = {1307.6212},
    primaryClass = "astro-ph.IM",
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    month = oct,
    volume = 558,
    doi = {10.1051/0004-6361/201322068},
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}

@article{galic2020method,
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}

@article{pastor2021learning,
  title={Learning the Physics of Particle Transport via Transformers},
  author={Pastor-Serrano, Oscar and Perk{\'o}, Zolt{\'a}n},
  journal={arXiv preprint arXiv:2109.03951},
  year={2021},
  doi={10.48550/arXiv.2109.03951}
}

@phdthesis{rembish2021automating,
  title={Automating Medical Physics Quality Assurance Tasks in Radiation Oncology},
  author={Rembish, Jacob},
  year={2021},
  url={https://www.proquest.com/docview/2564568968},
  school={The University of Texas Health Science Center at San Antonio}
}

@article{rodriguez2020new,
  title={A new approach to radiochromic film dosimetry based on non-local means},
  author={Rodr{\'\i}guez, C{\'e}sar and L{\'o}pez-Fern{\'a}ndez, Alfonso and Garc{\'\i}a-Pinto, Diego},
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}

@article{baltz2021validation,
  title={Validation of spline modeling for calculation of electron insert factors for {Varian} linear accelerators},
  author={Baltz, Garrett C and Kirsner, Steven M},
  journal={Journal of Applied Clinical Medical Physics},
  volume={22},
  number={11},
  pages={64--70},
  year={2021},
  publisher={Wiley Online Library},
  doi={10.1002/acm2.13430},
}

@inproceedings{spezialetti2021using,
  title={Using Deep Learning for Fast Dose Refinement in Proton Therapy},
  author={Spezialetti, Matteo and Lapenna, Fulvio and Caianiello, Pasquale and Fracchiolla, Francesco and Muciaccia, Federico and Placidi, Giuseppe and Russo, Giorgio and Mignosi, Filippo},
  booktitle={2021 IEEE International Conference on Systems, Man, and Cybernetics (SMC)},
  pages={1783--1789},
  year={2021},
  organization={IEEE},
  doi={10.1109/SMC52423.2021.9658879}
}

@article{tsuneda2021plastic,
  title={Plastic scintillation dosimeter with a conical mirror for measuring 3D dose distribution},
  author={Tsuneda, Masato and Nishio, Teiji and Ezura, Takatomo and Karasawa, Kumiko},
  journal={Medical Physics},
  volume={48},
  number={10},
  pages={5639--5650},
  year={2021},
  publisher={Wiley Online Library},
  doi={10.1002/mp.15164}
}

@article{cronholm2020mri,
  title={MRI only radiotherapy planning using the transfer function estimation algorithm},
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}

@article{milan2019evaluation,
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  author={Milan, Thomas and Grogan, Garry and Ebert, Martin A and Rowshanfarzad, Pejman},
  journal={Medical Physics},
  volume={46},
  number={5},
  pages={1984--1994},
  year={2019},
  publisher={Wiley Online Library},
  doi={10.1002/mp.13491}
}

@article{gajewski2021commissioning,
  title={Commissioning of GPU--accelerated {Monte} {Carlo} code FRED for clinical applications in proton therapy},
  author={Gajewski, Jan and Garbacz, Magdalena and Chang, Chih-Wei and Czerska, Katarzyna and Durante, Marco and Krah, Nils and Krzempek, Katarzyna and Kope{\'c}, Renata and Lin, Liyong and Moj{\.z}eszek, Natalia and others},
  journal={Frontiers in Physics},
  volume={8},
  pages={403},
  year={2021},
  publisher={Frontiers},
  doi={10.3389/fphy.2020.567300}
}

@article{lysakovski2021development,
  title={Development and Benchmarking of a {Monte} {Carlo} Dose Engine for Proton Radiation Therapy},
  author={Lysakovski, Peter and Ferrari, Alfredo and Tessonnier, Thomas and Besuglow, Judith and Kopp, Benedikt and Mein, Stewart and Haberer, Thomas and Debus, J{\"u}rgen and Mairani, Andrea},
  journal={Frontiers in Physics},
  pages={655},
  year={2021},
  publisher={Frontiers},
  doi={10.3389/fphy.2021.741453}
}

@article{castle2022,
  author={Castle, James R and Duan, Jingwei and Feng, Xue and Chen, Quan},
  title={Development of a virtual source model for {Monte} {Carlo}-based independent dose calculation for varian linac},
  publisher={Wiley Online Library},
  journal={Journal of Applied Clinical Medical Physics},
  pages={e13556},
  year={2022},
  keywords={Monte Carlo independent dose calculation, virtual source model, Varian Linac},
  doi={10.1002/acm2.13556},
  url={https://aapm.onlinelibrary.wiley.com/doi/abs/10.1002/acm2.13556},
  eprint={https://aapm.onlinelibrary.wiley.com/doi/pdf/10.1002/acm2.13556},
  abstract={Abstract Monte Carlo (MC) independent dose calculations are often based on phase-space files (PSF), as they can accurately represent particle characteristics. PSF generally are large and create a bottleneck in computation time. In addition, the number of independent particles is limited by the PSF, preventing further reduction of statistical uncertainty. The purpose of this study is to develop and validate a virtual source model (VSM) to address these limitations. Particles from existing PSF for the Varian TrueBeam medical linear accelerator 6X, 6XFFF, 10X, and 10XFFF beam configurations were tallied, analyzed, and used to generate a dual-source photon VSM that includes electron contamination. The particle density distribution, kinetic energy spectrum, particle direction, and the correlations between characteristics were computed. The VSM models for each beam configuration were validated with water phantom measurements as well as clinical test cases against the original PSF. The new VSM requires 67 MB of disk space for each beam configuration, compared to 50 GB for the PSF from which they are based and effectively remove the bottleneck set by the PSF. At 3\% MC uncertainty, the VSM approach reduces the calculation time by a factor of 14 on our server. MC doses obtained using the VSM approach were compared against PSF-generated doses in clinical test cases and measurements in a water phantom using a gamma index analysis. For all tests, the VSMs were in excellent agreement with PSF doses and measurements (>90\% passing voxels between doses and measurements). Results of this study indicate the successful derivation and implementation of a VSM model for Varian Linac that significantly saves computation time without sacrificing accuracy for independent dose calculation.}
}

@article{douglass2021deepwl,
  title={DeepWL: Robust EPID based {Winston}-{Lutz} analysis using deep learning, synthetic image generation and optical path-tracing},
  author={Douglass, Michael John James and Keal, James Alan},
  journal={Physica Medica},
  volume={89},
  pages={306--316},
  year={2021},
  publisher={Elsevier},
  doi={10.1016/j.ejmp.2021.08.012}
}

@article{bertcatharine,
  year = {2021},
  title={Core Curriculum for Medical Physics Experts in Radiotherapy 3rd Edition},
  author={Bert, Christoph and Bertholet, Jenny and Essers, Marion and Heijmen, Ben and Jornet, Nuria and Koutsouveli, Efi and Schwarz, Marco and Bodale, Marin and Casares-Magaz, Oscar and Gerskevitch, Eduard and others},
  url={https://www.efomp.org/uploads/595e3c8a-52d9-440f-b50b-183c3a00cb00/Radiotherapy_cc_2022.pdf}
}

@article{yang2022PMB,
  title={Adaptation and dosimetric commissioning of a synchrotron-based proton beamline for FLASH experiments},
  author={Yang, Ming and Wang, Xiaochun and Guan, Fada and Titt, Uwe and Iga, Kiminori and Jiang, Dadi and Takaoka, Takeshi and Totake, Satoshi and Katayose, Tadashi and Umezawa, Masumi and Schüler, Emil and Frank, Steven J and Lin, Steven Hsesheng and Sahoo, Narayan and Koong, Albert C and Mohan, Radhe and Zhu, Xiaorong Ronald},
  journal={Physics in Medicine and Biology},
  year={2022},
  publisher={IOP Publishing},
  url={https://iopscience.iop.org/article/10.1088/1361-6560/ac8269/meta},
  doi={10.1088/1361-6560/ac8269}
}

@article{kuo2020JACMP,
  title={Implementation and validation of an in-house geometry optimization software for SRS VMAT planning of multiple cranial metastases},
  author={Kuo, LiCheng and Zhang, PengPeng and Pham, Hai and Ballangrud, AM},
  journal={Journal of Applied Clinical Medical Physics},
  year={2020},
  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1002/acm2.12961},
  doi={10.1002/acm2.12961}
}

@article{Maughan2019MP,
  title={Validation of post-treatment PET-based dosimetry software for hepatic radioembolization of {Yttrium}-90 microspheres},
  author={Maughan, NM and Garcia-Ramirez, J and Arpidone, M and Swallen, A and Laforest, R and Goddu, SM and Parikh, PJ and Zoberi, JE},
  journal={Medical Physics},
  year={2019},
  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1002/mp.13444},
  doi={10.1002/mp.13444}
}

@article{Arumugam2016MP,
  title={An online x-ray based position validation system for prostate hypofractionated radiotherapy},
  author={Arumugam, S and Sidhom, M and Xing, A and Holloway, L},
  journal={Medical Physics},
  year={2016},
  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1118/1.4940351},
  doi={10.1118/1.4940351}
}

@article{Edvardsson2018PMB,
  title={Motion induced interplay effects for VMAT radiotherapy},
  author={Edvardsson, A and Nordström, F and Ceberg, C and Ceberg, S},
  journal={Physics in Medicine and Biology},
  year={2018},
  publisher={IOP Publishing},
  url={https://iopscience.iop.org/article/10.1088/1361-6560/aab957/meta},
  doi={10.1088/1361-6560/aab957}
}

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  author={Li, JS and Lin, T and Chen, L and Price, RA Jr and Ma, CM},
  journal={Medical Physics},
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  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1118/1.3413997},
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}

@article{Bakhtiari2011MP,
  title={Using an EPID for patient-specific VMAT quality assurance},
  author={Bakhtiari, M and Kumaraswamy, L and Bailey, DW and de Boer, S and Malhotra, HK and Podgorsak, MB},
  journal={Medical Physics},
  year={2011},
  publisher={Wiley},
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}

@article{Latala2020MD,
  title={The comparison of VMAT test results for Clinac {2300C/D} and TrueBeam accelerators},
  author={Latala, A and Fujak, E and Walewska, A and Kukołowicz, P},
  journal={Medical Dosimetry},
  year={2020},
  publisher={Elsevier},
  url={https://doi.org/10.1016/j.meddos.2019.12.007},
  doi={10.1016/j.meddos.2019.12.007}
}

@article{Bhagroo2019MP,
  title={Secondary monitor unit calculations for VMAT using parallelized {Monte} {Carlo} simulations},
  author={Bhagroo, S and French, SB and Mathews, JA and Nazareth, DP},
  journal={Journal of Applied Clinical Medical Physics},
  year={2019},
  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1002/acm2.12605},
  doi={10.1002/acm2.12605}
}

@article{Huang2021JACMP,
  title={Impact of slice thickness, pixel size, and CT dose on the performance of automatic contouring algorithms},
  author={Huang, K and Rhee, DJ and Ger, R and Layman, R and Yang, J and Cardenas, CE and Court, LE},
  journal={Journal of Applied Clinical Medical Physics},
  year={2021},
  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1002/acm2.13207},
  doi={10.1002/acm2.13207}
}

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  title={Qualitative evaluation of fiducial markers for radiotherapy imaging},
  author={Chan, MF and Cohen, GN and Deasy, JO},
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  publisher={SAGE},
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  doi={10.1177/1533034614547447}
}

@article{Skouboe2019RO,
  title={First clinical real-time motion-including tumor dose reconstruction during radiotherapy delivery},
  author={Skouboe, S and Ravkilde, T and Bertholet, J and Hansen, R and Worm, ES and Muurholm, CG and Weber, B and Høyer, M and Poulsen, PR},
  journal={Radiotherapy and Oncology},
  year={2019},
  publisher={Elsevier},
  url={https://doi.org/10.1016/j.radonc.2019.07.007},
  doi={10.1016/j.radonc.2019.07.007}
}

@article{Kimura2021MP,
  title={Error detection model developed using a multi-task convolutional neural network in patient-specific quality assurance for volumetric-modulated arc therapy},
  author={Kimura, Y and Kadoya, N and Oku, Y and Kajikawa, T and Tomori, S and Jingu, K},
  journal={Medical Physics},
  year={2021},
  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1002/mp.15031},
  doi={10.1002/mp.15031}
}

@article{Inaniwa2018PMB,
  title={Adaptation of stochastic microdosimetric kinetic model for charged-particle therapy treatment planning},
  author={Inaniwa, T and Kanematsu, N},
  journal={Physics in Medicine and Biology},
  year={2018},
  publisher={IOP Publishing},
  url={https://iopscience.iop.org/article/10.1088/1361-6560/aabede/meta},
  doi={10.1088/1361-6560/aabede}
}

@article{Keall2014MP,
  title={The first clinical implementation of electromagnetic transponder-guided MLC tracking},
  author={Keall, PJ and Colvill, E and O'Brien, R and Ng, JA, Poulsen, PR and Eade, T and Kneebone, A and Booth, JT},
  journal={Medical Physics},
  year={2014},
  publisher={Wiley},
  url={https://aapm.onlinelibrary.wiley.com/doi/full/10.1118/1.4862509},
  doi={10.1118/1.4862509}
}