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cod-tags.html
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<!DOCTYPE html>
<html lang="en">
<head>
<title>COD Tags</title>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="theme-color" content="#f0e0d0">
<style>
html { margin: 0 auto; overflow-y: scroll; color: #3b4044;
background-color: #ddc; }
body { font: 13px sans-serif; line-height: 150%; margin: 0; }
h1 { text-align: center; font-size: 30px; font-weight: normal; }
h2 { text-align: center; font-size: 20px; margin-top: 40px; }
a { text-decoration: none; border-bottom: 1px dashed; color: #24a; }
#footnote { font-size: 12px; text-align: center; padding: 30px 0; }
table { width: 100%; border-collapse: collapse; background-color: #f8f8f8; }
table, th, td { border: 1px solid #888; }
table { box-shadow: 2px 2px 4px rgba(0,0,0,0.20); }
th, td { padding: 6px; }
table th { background: #eee; }
td { text-align: right; }
td:first-child, td:last-child { text-align: left; }
code { background: #68A; color: #fff; font: 12px sans-serif; padding: 0 1px;
margin-bottom: 4px; }
@media only screen and (max-width: 950px) { html { margin: 0; } }
nav { font-size: 16px; margin: 30px; }
nav a { margin-left: 15px; }
/* tablesort.css */
th[role=columnheader]:not(.no-sort) {
cursor: pointer;
}
th[role=columnheader]:not(.no-sort):after {
content: '';
float: right;
margin-top: 7px;
border-width: 0 4px 4px;
border-style: solid;
border-color: #404040 transparent;
visibility: hidden;
opacity: 0;
-ms-user-select: none;
-webkit-user-select: none;
-moz-user-select: none;
user-select: none;
}
th[aria-sort=ascending]:not(.no-sort):after {
border-bottom: none;
border-width: 4px 4px 0;
}
th[aria-sort]:not(.no-sort):after {
visibility: visible;
opacity: 0.4;
}
th[role=columnheader]:not(.no-sort):hover:after {
visibility: visible;
opacity: 1;
}
span[eg] {
position: relative;
}
span[eg]:hover:after {
content: "e.g.\00a0" attr(eg);
display: block;
z-index: 10;
background-color: rgba(255,255,204,0.8); /*#ffc*/
padding: 0 3px;
border: 1px solid rgba(238,238,170,0.8); /*#eea*/
position: absolute;
top: -100%;
left: 10%;
}
</style>
</head>
<body>
<h1>Crystallography Open Database CIF Tags</h1>
<nav id="nav">
Jump to:
<a href="#coor">CIF Files</a>
<a href="#sf">HKL Files</a>
</nav>
<h2 id="coor">CIF Files</h2>
<table id="coor-table">
<thead>
<tr data-sort-method='thead'>
<th rowspan="2" aria-sort="ascending">Tag</th>
<th rowspan="2" data-sort-method="number">in %</th>
<th data-sort-method="number">min</th>
<th data-sort-method="number">avg</th>
<th data-sort-method="number">max</th>
<th rowspan="2" data-sort-method="none" class="no-sort">values</th>
</tr>
<tr>
<th colspan="3">values per block</th>
</tr>
</thead>
</table>
<h2 id="sf">HKL Files</h2>
<table id="sf-table">
<thead>
<tr data-sort-method='thead'>
<th rowspan="2" aria-sort="ascending">Tag</th>
<th rowspan="2" data-sort-method="number">in %</th>
<th data-sort-method="number">min</th>
<th data-sort-method="number">avg</th>
<th data-sort-method="number">max</th>
<th rowspan="2" data-sort-method="none" class="no-sort">values</th>
</tr>
<tr>
<th colspan="3">values per block</th>
</tr>
</thead>
</table>
<div id="footnote">
This is part of the
<a href="https://project-gemmi.github.io/">project GEMMI</a>.
Uses <a href="https://d3js.org/">d3.js</a>
and <a href="http://tristen.ca/tablesort/demo/">tablesort</a>.
Data was extracted from the COD on 2021-04-23.
<p><b><a href="https://github.com/project-gemmi/pdb-stats">
Source code and info...</a></b>
</div>
<!--script src="https://d3js.org/d3.v4.min.js"></script-->
<script src="js/d3-collection.v1.min.js"></script>
<script src="js/d3-dispatch.v1.min.js"></script>
<script src="js/d3-dsv.v1.min.js"></script>
<script src="js/d3-request.v1.min.js"></script>
<script src="js/d3-selection.v1.min.js"></script>
<script src="js/tablesort.min.js"></script>
<script type="text/javascript">
"use strict";
function tr_html(d) {
var row = '<td>' + d[0] + '</td><td>' + d[1] + '</td><td>' +
d[2] + '</td><td>' + d[3] + '</td><td>' + d[4] + '</td><td>';
for (var i = 5; i < d.length; ++i) {
var s1 = d[i].indexOf(' ');
var s2 = d[i].indexOf(' ', s1+1);
row += '<span eg="' + d[i].substring(s1+1, s2) + '">';
row += d[i].substring(0, s1);
if (d[i][s2+1] === '{') {
row += '×' + d[i].substring(s2+1);
} else {
row += '×<code>' + d[i].substring(s2+1) + '</code>';
}
row += '</span> ';
}
return row + '</td>';
}
d3.text('cod-cif-tags.tsv', function(text) {
var data = d3.tsvParseRows(text);
var tbody = d3.select('#coor-table').append('tbody');
tbody.selectAll('tr').data(data).enter().append('tr').html(tr_html);
new Tablesort(document.getElementById('coor-table'));
});
d3.text('cod-hkl-tags.tsv', function(text) {
var data = d3.tsvParseRows(text);
var tbody = d3.select('#sf-table').append('tbody');
tbody.selectAll('tr').data(data).enter().append('tr').html(tr_html);
new Tablesort(document.getElementById('sf-table'));
});
</script>
</body>
</html>
<!-- vim: set et ts=2 sw=2: -->