{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":1039662,"defaultBranch":"main","name":"ProDy","ownerLogin":"prody","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2010-10-31T15:57:43.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/1813049?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714158933.0","currentOid":""},"activityList":{"items":[{"before":"05b3a2449c8c2d15e2b4106868ea2b8827840ced","after":"3078bef48851d1f022522a60b35c0a6071e3edd7","ref":"refs/heads/main","pushedAt":"2024-05-07T20:49:07.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1815 from jamesmkrieger/fix_networkx\n\nfix networkx for updated versions","shortMessageHtmlLink":"Merge pull request #1815 from jamesmkrieger/fix_networkx"}},{"before":"33ac664378b024f7db33bee531e6481e08870789","after":"05b3a2449c8c2d15e2b4106868ea2b8827840ced","ref":"refs/heads/main","pushedAt":"2024-05-07T16:39:08.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"karolamik13","name":"Karolina Mikulska-Ruminska","path":"/karolamik13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17188432?s=80&v=4"},"commit":{"message":"Merge pull request #1896 from karolamik13/interactions\n\nChanges in external links [People & Bahar Lab]","shortMessageHtmlLink":"Merge pull request #1896 from karolamik13/interactions"}},{"before":"b7b2be2be22047939dfcfc0a9df859b40fb97b20","after":"33ac664378b024f7db33bee531e6481e08870789","ref":"refs/heads/main","pushedAt":"2024-04-26T22:39:48.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"atbogetti","name":"Anthony Bogetti","path":"/atbogetti","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34397256?s=80&v=4"},"commit":{"message":"Merge pull request #1887 from karolamik13/interactions","shortMessageHtmlLink":"Merge pull request #1887 from karolamik13/interactions"}},{"before":"b7b2be2be22047939dfcfc0a9df859b40fb97b20","after":null,"ref":"refs/heads/master","pushedAt":"2024-04-26T19:15:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"atbogetti","name":"Anthony Bogetti","path":"/atbogetti","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34397256?s=80&v=4"}},{"before":null,"after":"b7b2be2be22047939dfcfc0a9df859b40fb97b20","ref":"refs/heads/main","pushedAt":"2024-04-26T19:15:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"atbogetti","name":"Anthony Bogetti","path":"/atbogetti","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34397256?s=80&v=4"},"commit":{"message":"Merge pull request #1865 from jamesmkrieger/bioexcel_cv19\n\nBioexcel cv19","shortMessageHtmlLink":"Merge pull request #1865 from jamesmkrieger/bioexcel_cv19"}},{"before":"29610e7db2f44e7c9803b80165b6b52816e0fe32","after":"b7b2be2be22047939dfcfc0a9df859b40fb97b20","ref":"refs/heads/master","pushedAt":"2024-04-17T10:40:34.000Z","pushType":"pr_merge","commitsCount":14,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1865 from jamesmkrieger/bioexcel_cv19\n\nBioexcel cv19","shortMessageHtmlLink":"Merge pull request #1865 from jamesmkrieger/bioexcel_cv19"}},{"before":"e8d68bcc1814ed739e279f4efd8a4549820d94a2","after":"29610e7db2f44e7c9803b80165b6b52816e0fe32","ref":"refs/heads/master","pushedAt":"2024-04-16T16:59:39.000Z","pushType":"pr_merge","commitsCount":13,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1849 from jamesmkrieger/logistic\n\nLogistic regression for differences between sub-ensembles","shortMessageHtmlLink":"Merge pull request #1849 from jamesmkrieger/logistic"}},{"before":"5d521628dd059de6356a686e1f01c07248464c88","after":"e8d68bcc1814ed739e279f4efd8a4549820d94a2","ref":"refs/heads/master","pushedAt":"2024-04-16T12:21:13.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"karolamik13","name":"Karolina Mikulska-Ruminska","path":"/karolamik13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17188432?s=80&v=4"},"commit":{"message":"Merge pull request #1868 from jamesmkrieger/jmk_waterFinder_2\n\nadd no waters align error","shortMessageHtmlLink":"Merge pull request #1868 from jamesmkrieger/jmk_waterFinder_2"}},{"before":"58c551b63049aa7a0335c3b5d68d73340e87f84a","after":"5d521628dd059de6356a686e1f01c07248464c88","ref":"refs/heads/master","pushedAt":"2024-04-16T12:09:26.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1861 from jamesmkrieger/exgnm_save\n\nadd exGNM to save load model","shortMessageHtmlLink":"Merge pull request #1861 from jamesmkrieger/exgnm_save"}},{"before":"a514a90e13d2186996f4a273be0026ef80e5c15e","after":"58c551b63049aa7a0335c3b5d68d73340e87f84a","ref":"refs/heads/master","pushedAt":"2024-04-16T10:42:50.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"karolamik13","name":"Karolina Mikulska-Ruminska","path":"/karolamik13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17188432?s=80&v=4"},"commit":{"message":"Merge pull request #1867 from jamesmkrieger/jmk_waterFinder_2\n\nfix calcWaterBridgesTraj docs","shortMessageHtmlLink":"Merge pull request #1867 from jamesmkrieger/jmk_waterFinder_2"}},{"before":"f00724b88a35385a39aa2d1c994c4a22e8b69dfb","after":"a514a90e13d2186996f4a273be0026ef80e5c15e","ref":"refs/heads/master","pushedAt":"2024-04-12T14:19:57.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"karolamik13","name":"Karolina Mikulska-Ruminska","path":"/karolamik13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/17188432?s=80&v=4"},"commit":{"message":"Merge pull request #1864 from jamesmkrieger/jmk_watFinder\n\nfix consideredAtoms errors","shortMessageHtmlLink":"Merge pull request #1864 from jamesmkrieger/jmk_watFinder"}},{"before":"434c1ea224d11658c5c54c89068cf36160b4584c","after":"f00724b88a35385a39aa2d1c994c4a22e8b69dfb","ref":"refs/heads/master","pushedAt":"2024-04-09T20:28:07.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1862 from jamesmkrieger/bioexcel_cv19\n\nfix bioexcel not timing out","shortMessageHtmlLink":"Merge pull request #1862 from jamesmkrieger/bioexcel_cv19"}},{"before":"d0a8caae7d07a64e1907d8060ebb09ec9706fb3e","after":"434c1ea224d11658c5c54c89068cf36160b4584c","ref":"refs/heads/master","pushedAt":"2024-04-09T13:37:24.000Z","pushType":"pr_merge","commitsCount":21,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1853 from jamesmkrieger/bioexcel_cv19\n\nAdd Bioexcel cv19 database","shortMessageHtmlLink":"Merge pull request #1853 from jamesmkrieger/bioexcel_cv19"}},{"before":"3bfaf1679f81dfdd10b22d7b8ab32e3c3458d778","after":"d0a8caae7d07a64e1907d8060ebb09ec9706fb3e","ref":"refs/heads/master","pushedAt":"2024-04-09T11:16:30.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1858 from jamesmkrieger/pfam_seed\n\nset fetchPfamMSA default to seed","shortMessageHtmlLink":"Merge pull request #1858 from jamesmkrieger/pfam_seed"}},{"before":"239bd8c280feaab6e3cd57e69451a85a12a39b85","after":"3bfaf1679f81dfdd10b22d7b8ab32e3c3458d778","ref":"refs/heads/master","pushedAt":"2024-03-28T17:40:23.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1847 from jamesmkrieger/cifheader_fixes\n\ncifheader fixes","shortMessageHtmlLink":"Merge pull request #1847 from jamesmkrieger/cifheader_fixes"}},{"before":"0587ec6ea6b770c12d6567b8dfcab5f02dba5baa","after":"239bd8c280feaab6e3cd57e69451a85a12a39b85","ref":"refs/heads/master","pushedAt":"2024-03-28T15:02:34.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1854 from jamesmkrieger/fix_missing_norm\n\nfix missing norm in calcProj","shortMessageHtmlLink":"Merge pull request #1854 from jamesmkrieger/fix_missing_norm"}},{"before":"9893cf106a57643f5b7527d332957c0d78a155cc","after":"0587ec6ea6b770c12d6567b8dfcab5f02dba5baa","ref":"refs/heads/master","pushedAt":"2024-03-28T14:59:20.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1842 from jamesmkrieger/more_nucleosides\n\nMore nucleosides","shortMessageHtmlLink":"Merge pull request #1842 from jamesmkrieger/more_nucleosides"}},{"before":"cdd5caa4f8b37363ca9cdd49b9d9851761291914","after":"9893cf106a57643f5b7527d332957c0d78a155cc","ref":"refs/heads/master","pushedAt":"2024-03-28T14:58:21.000Z","pushType":"pr_merge","commitsCount":16,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1817 from jamesmkrieger/interactions_docs\n\nupdate docs to include SignDy, InSty and WatFinder names","shortMessageHtmlLink":"Merge pull request #1817 from jamesmkrieger/interactions_docs"}},{"before":"97a448b53940b509e8c24e3687668ff4f3e115a3","after":"cdd5caa4f8b37363ca9cdd49b9d9851761291914","ref":"refs/heads/master","pushedAt":"2024-03-28T14:52:24.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1848 from jamesmkrieger/showProj_no_calc\n\nadd showProj proj input","shortMessageHtmlLink":"Merge pull request #1848 from jamesmkrieger/showProj_no_calc"}},{"before":"83600434a03e23dba09ac7309f6c899e056b34af","after":"97a448b53940b509e8c24e3687668ff4f3e115a3","ref":"refs/heads/master","pushedAt":"2024-03-28T14:50:53.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1850 from jamesmkrieger/pop_nproc_clustenm\n\npop nproc in clustenm app","shortMessageHtmlLink":"Merge pull request #1850 from jamesmkrieger/pop_nproc_clustenm"}},{"before":"ade72dd6c1edea3ae5b58f2042336a0d808f1d45","after":"83600434a03e23dba09ac7309f6c899e056b34af","ref":"refs/heads/master","pushedAt":"2024-03-27T15:10:27.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1851 from jamesmkrieger/pfam_fix\n\nPfam fix","shortMessageHtmlLink":"Merge pull request #1851 from jamesmkrieger/pfam_fix"}},{"before":"ef3d678014beaff525a2f221fc3008ef51e4437b","after":"ade72dd6c1edea3ae5b58f2042336a0d808f1d45","ref":"refs/heads/master","pushedAt":"2024-03-27T09:28:27.000Z","pushType":"pr_merge","commitsCount":28,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1655 from jamesmkrieger/remove_numpy_alias_types\n\nremove np alias types","shortMessageHtmlLink":"Merge pull request #1655 from jamesmkrieger/remove_numpy_alias_types"}},{"before":"412c8fa9b18f78065bea4d9a641f77a520dc0892","after":"ef3d678014beaff525a2f221fc3008ef51e4437b","ref":"refs/heads/master","pushedAt":"2024-03-15T09:46:03.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1835 from jamesmkrieger/scipion_minim\n\nmore Scipion minimal clustenm changes","shortMessageHtmlLink":"Merge pull request #1835 from jamesmkrieger/scipion_minim"}},{"before":"d92342b6156584652376b13160f04da81ebc2912","after":"412c8fa9b18f78065bea4d9a641f77a520dc0892","ref":"refs/heads/master","pushedAt":"2024-02-29T23:41:13.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1833 from jamesmkrieger/scipion_minimal\n\nClustENM fitting changes needed for Scipion-EM-ProDy","shortMessageHtmlLink":"Merge pull request #1833 from jamesmkrieger/scipion_minimal"}},{"before":"5f3528ffd91efc99dd853db627f553f55becb935","after":"d92342b6156584652376b13160f04da81ebc2912","ref":"refs/heads/master","pushedAt":"2024-02-27T16:30:45.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1831 from jamesmkrieger/anm_app_docs\n\nUpdate app docs to include NMA","shortMessageHtmlLink":"Merge pull request #1831 from jamesmkrieger/anm_app_docs"}},{"before":"12c555a92b5efea4e25d40fb95c0b62ef12fa90f","after":"5f3528ffd91efc99dd853db627f553f55becb935","ref":"refs/heads/master","pushedAt":"2024-02-08T17:25:20.000Z","pushType":"pr_merge","commitsCount":25,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1802 from jamesmkrieger/lda\n\nAdd Linear Discriminant Analysis","shortMessageHtmlLink":"Merge pull request #1802 from jamesmkrieger/lda"}},{"before":"18388b42cc68e30d787b9c49edebcf6f006bf83c","after":"12c555a92b5efea4e25d40fb95c0b62ef12fa90f","ref":"refs/heads/master","pushedAt":"2024-02-08T17:23:38.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1823 from jamesmkrieger/kmedoids\n\nadd kmedoid clustering","shortMessageHtmlLink":"Merge pull request #1823 from jamesmkrieger/kmedoids"}},{"before":"0a27ae8c010420c500056f4574d2bfa3a8bb7ce2","after":"18388b42cc68e30d787b9c49edebcf6f006bf83c","ref":"refs/heads/master","pushedAt":"2024-02-08T17:16:45.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1824 from jamesmkrieger/override_good_seqid\n\noverride GOOD_SEQID and GOOD_COVERAGE with seqid and coverage if higher","shortMessageHtmlLink":"Merge pull request #1824 from jamesmkrieger/override_good_seqid"}},{"before":"59ea781d36fdeee5c946a811ac0f7ab8cad21e46","after":"0a27ae8c010420c500056f4574d2bfa3a8bb7ce2","ref":"refs/heads/master","pushedAt":"2024-02-08T16:26:14.000Z","pushType":"pr_merge","commitsCount":17,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1816 from jamesmkrieger/update_alignBioPairwise\n\nfix alignBioPairwise for updated biopython","shortMessageHtmlLink":"Merge pull request #1816 from jamesmkrieger/update_alignBioPairwise"}},{"before":"bb2b63f7156eeb3cfbfc2e8eba4e68bf26036bb0","after":"59ea781d36fdeee5c946a811ac0f7ab8cad21e46","ref":"refs/heads/master","pushedAt":"2024-02-08T16:24:37.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamesmkrieger","name":"James Krieger","path":"/jamesmkrieger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13259162?s=80&v=4"},"commit":{"message":"Merge pull request #1825 from jamesmkrieger/fix_pfam_tests\n\nfix pfam test for pfam changes","shortMessageHtmlLink":"Merge pull request #1825 from jamesmkrieger/fix_pfam_tests"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEQ_4ofgA","startCursor":null,"endCursor":null}},"title":"Activity ยท prody/ProDy"}