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Peer review for renv (I think you are all set! congrats!) #2

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sim960082 opened this issue Apr 21, 2024 · 1 comment
Open

Peer review for renv (I think you are all set! congrats!) #2

sim960082 opened this issue Apr 21, 2024 · 1 comment

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@sim960082
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It did run the make install, but it resulted in a fault on my computer.
I think your code is right and it's because of some bugs on my end, so I'm going to tag the professor here
@benkeser

$ make install
Rscript -e "renv::restore(prompt=FALSE)"

  • One or more packages recorded in the lockfile are not installed.
  • Use renv::status() for more details.
    The following package(s) will be updated:

CRAN -----------------------------------------------------------------------

  • askpass [* -> 1.2.0]
  • backports [* -> 1.4.1]
  • base64enc [* -> 0.1-3]
  • bigD [* -> 0.2.0]
  • bit [* -> 4.0.5]
  • bit64 [* -> 4.0.5]
  • bitops [* -> 1.0-7]
  • blob [* -> 1.2.4]
  • broom [* -> 1.0.5]
  • broom.helpers [* -> 1.14.0]
  • bslib [* -> 0.6.1]
  • cachem [* -> 1.0.8]
  • callr [* -> 3.7.3]
  • cellranger [* -> 1.1.0]
  • cli [* -> 3.6.2]
  • clipr [* -> 0.8.0]
  • colorspace [* -> 2.1-0]
  • commonmark [* -> 1.9.0]
  • conflicted [* -> 1.2.0]
  • cpp11 [* -> 0.4.7]
  • crayon [* -> 1.5.2]
  • curl [* -> 5.2.0]
  • data.table [* -> 1.14.10]
  • DBI [* -> 1.2.0]
  • dbplyr [* -> 2.4.0]
  • digest [* -> 0.6.33]
  • dplyr [* -> 1.1.4]
  • dtplyr [* -> 1.3.1]
  • ellipsis [* -> 0.3.2]
  • evaluate [* -> 0.23]
  • fansi [* -> 1.0.6]
  • farver [* -> 2.1.1]
  • fastmap [* -> 1.1.1]
  • fontawesome [* -> 0.5.2]
  • forcats [* -> 1.0.0]
  • fs [* -> 1.6.3]
  • gargle [* -> 1.5.2]
  • generics [* -> 0.1.3]
  • ggplot2 [* -> 3.4.4]
  • glue [* -> 1.7.0]
  • googledrive [* -> 2.1.1]
  • googlesheets4 [* -> 1.1.1]
  • gt [* -> 0.10.0]
  • gtable [* -> 0.3.4]
  • gtsummary [* -> 1.7.2]
  • haven [* -> 2.5.4]
  • here [* -> 1.0.1]
  • highr [* -> 0.10]
  • hms [* -> 1.1.3]
  • htmltools [* -> 0.5.7]
  • htmlwidgets [* -> 1.6.4]
  • httr [* -> 1.4.7]
  • ids [* -> 1.0.1]
  • isoband [* -> 0.2.7]
  • jquerylib [* -> 0.1.4]
  • jsonlite [* -> 1.8.8]
  • juicyjuice [* -> 0.1.0]
  • kableExtra [* -> 1.3.4]
  • knitr [* -> 1.45]
  • labeling [* -> 0.4.3]
  • labelled [* -> 2.12.0]
  • lifecycle [* -> 1.0.4]
  • lubridate [* -> 1.9.3]
  • magrittr [* -> 2.0.3]
  • markdown [* -> 1.12]
  • memoise [* -> 2.0.1]
  • mime [* -> 0.12]
  • modelr [* -> 0.1.11]
  • munsell [* -> 0.5.0]
  • openssl [* -> 2.1.1]
  • pacman [* -> 0.5.1]
  • pillar [* -> 1.9.0]
  • pkgconfig [* -> 2.0.3]
  • prettyunits [* -> 1.2.0]
  • processx [* -> 3.8.3]
  • progress [* -> 1.2.3]
  • ps [* -> 1.7.5]
  • purrr [* -> 1.0.2]
  • R6 [* -> 2.5.1]
  • ragg [* -> 1.2.7]
  • rappdirs [* -> 0.3.3]
  • RColorBrewer [* -> 1.1-3]
  • Rcpp [* -> 1.0.11]
  • reactable [* -> 0.4.4]
  • reactR [* -> 0.5.0]
  • readr [* -> 2.1.4]
  • readxl [* -> 1.4.3]
  • rematch [* -> 2.0.0]
  • rematch2 [* -> 2.1.2]
  • remotes [* -> 2.4.2.1]
  • reprex [* -> 2.0.2]
  • rlang [* -> 1.1.3]
  • rmarkdown [* -> 2.25]
  • rprojroot [* -> 2.0.4]
  • rstudioapi [* -> 0.15.0]
  • rvest [* -> 1.0.3]
  • sass [* -> 0.4.8]
  • scales [* -> 1.3.0]
  • selectr [* -> 0.4-2]
  • stringi [* -> 1.8.3]
  • stringr [* -> 1.5.1]
  • svglite [* -> 2.1.3]
  • sys [* -> 3.4.2]
  • systemfonts [* -> 1.0.5]
  • textshaping [* -> 0.3.7]
  • tibble [* -> 3.2.1]
  • tidyr [* -> 1.3.0]
  • tidyselect [* -> 1.2.0]
  • tidyverse [* -> 2.0.0]
  • timechange [* -> 0.2.0]
  • tinytex [* -> 0.49]
  • tzdb [* -> 0.4.0]
  • utf8 [* -> 1.2.4]
  • uuid [* -> 1.1-1]
  • V8 [* -> 4.4.1]
  • vctrs [* -> 0.6.5]
  • viridisLite [* -> 0.4.2]
  • vroom [* -> 1.6.5]
  • webshot [* -> 0.5.5]
  • withr [* -> 2.5.2]
  • xfun [* -> 0.41]
  • xml2 [* -> 1.3.6]
  • yaml [* -> 2.3.8]

Downloading packages -------------------------------------------------------

  • Querying repositories for available binary packages ... Done!
  • Querying repositories for available source packages ... Done!
  • Downloading DBI from CRAN ... OK [946.4 Kb in 2.2s]
  • Downloading R6 from CRAN ... OK [82.5 Kb in 0.67s]
  • Downloading RColorBrewer from CRAN ... OK [54.6 Kb in 0.56s]
  • Downloading Rcpp from P3M ... OK [2.7 Mb in 1.9s]
  • Downloading V8 from P3M ... OK [8.5 Mb in 2.2s]
  • Downloading jsonlite from CRAN ... OK [1.1 Mb in 0.44s]
  • Downloading curl from CRAN ... OK [698.1 Kb in 1.0s]
  • Downloading askpass from CRAN ... OK [72.9 Kb in 0.89s]
  • Downloading sys from CRAN ... OK [45.2 Kb in 0.46s]
  • Downloading backports from CRAN ... OK [100 Kb in 0.45s]
  • Downloading base64enc from CRAN ... OK [31.5 Kb in 0.44s]
  • Downloading bigD from CRAN ... OK [1.1 Mb in 0.66s]
  • Downloading bit from CRAN ... OK [1.1 Mb in 0.55s]
  • Downloading bit64 from CRAN ... OK [479.4 Kb in 0.77s]
  • Downloading bitops from CRAN ... OK [30.9 Kb in 0.55s]
  • Downloading blob from CRAN ... OK [47.5 Kb in 0.55s]
  • Downloading rlang from CRAN ... OK [1.5 Mb in 0.66s]
  • Downloading vctrs from CRAN ... OK [1.3 Mb in 0.67s]
  • Downloading cli from CRAN ... OK [1.3 Mb in 0.66s]
  • Downloading glue from CRAN ... OK [157.1 Kb in 0.66s]
  • Downloading lifecycle from CRAN ... OK [137.1 Kb in 0.78s]
  • Downloading broom from CRAN ... OK [1.8 Mb in 0.56s]
  • Downloading dplyr from CRAN ... OK [1.5 Mb in 0.66s]
  • Downloading generics from CRAN ... OK [78.3 Kb in 0.66s]
  • Downloading magrittr from CRAN ... OK [221.4 Kb in 0.78s]
  • Downloading pillar from CRAN ... OK [644.6 Kb in 0.9s]
  • Downloading fansi from CRAN ... OK [305.4 Kb in 0.66s]
  • Downloading utf8 from CRAN ... OK [145 Kb in 0.67s]
  • Downloading tibble from CRAN ... OK [674.6 Kb in 0.89s]
  • Downloading pkgconfig from CRAN ... OK [22.1 Kb in 0.56s]
  • Downloading tidyselect from P3M ... OK [220.5 Kb in 1.5s]
  • Downloading withr from P3M ... OK [228 Kb in 1.5s]
  • Downloading ellipsis from CRAN ... OK [39.3 Kb in 0.55s]
  • Downloading purrr from CRAN ... OK [488.9 Kb in 0.55s]
  • Downloading stringr from CRAN ... OK [313.4 Kb in 0.57s]
  • Downloading stringi from CRAN ... OK [14.3 Mb in 1.3s]
  • Downloading tidyr from P3M ... OK [1.2 Mb in 1.5s]
  • Downloading cpp11 from CRAN ... OK [297.2 Kb in 0.88s]
  • Downloading broom.helpers from P3M ... OK [526.8 Kb in 1.5s]
  • Downloading labelled from CRAN ... OK [313.6 Kb in 1.0s]
  • Downloading haven from CRAN ... OK [735.4 Kb in 0.66s]
  • Downloading forcats from CRAN ... OK [419.4 Kb in 0.79s]
  • Downloading hms from CRAN ... OK [101.7 Kb in 0.68s]
  • Downloading readr from P3M ... OK [1.1 Mb in 1.5s]
  • Downloading clipr from CRAN ... OK [53.8 Kb in 0.56s]
  • Downloading crayon from CRAN ... OK [159.5 Kb in 0.66s]
  • Downloading vroom from CRAN ... OK [1.2 Mb in 0.66s]
  • Downloading tzdb from CRAN ... OK [995.8 Kb in 1.0s]
  • Downloading progress from CRAN ... OK [86.4 Kb in 0.67s]
  • Downloading prettyunits from CRAN ... OK [154.8 Kb in 0.66s]
  • Downloading bslib from P3M ... OK [6.2 Mb in 2.0s]
  • Downloading cachem from CRAN ... OK [70.7 Kb in 0.44s]
  • Downloading fastmap from CRAN ... OK [128.3 Kb in 0.45s]
  • Downloading htmltools from P3M ... OK [351.7 Kb in 1.5s]
  • Downloading digest from P3M ... OK [199.5 Kb in 1.3s]
  • Downloading jquerylib from CRAN ... OK [513.7 Kb in 0.79s]
  • Downloading memoise from CRAN ... OK [49.2 Kb in 0.45s]
  • Downloading mime from CRAN ... OK [39.6 Kb in 0.46s]
  • Downloading sass from CRAN ... OK [2.9 Mb in 0.78s]
  • Downloading fs from CRAN ... OK [383.8 Kb in 0.57s]
  • Downloading rappdirs from CRAN ... OK [50.2 Kb in 0.68s]
  • Downloading callr from P3M ... OK [433 Kb in 1.3s]
  • Downloading processx from CRAN ... OK [160.4 Kb in 0.89s]
  • Downloading ps from P3M ... OK [538.2 Kb in 1.6s]
  • Downloading cellranger from CRAN ... OK [102.7 Kb in 0.56s]
  • Downloading rematch from CRAN ... OK [18.7 Kb in 0.55s]
  • Downloading colorspace from CRAN ... OK [2.5 Mb in 0.99s]
  • Downloading commonmark from P3M ... OK [138.3 Kb in 1.3s]
  • Downloading conflicted from CRAN ... OK [56.1 Kb in 0.55s]
  • Downloading data.table from CRAN ... OK [5 Mb in 0.99s]
  • Downloading dbplyr from P3M ... OK [1.2 Mb in 1.1s]
  • Downloading dtplyr from CRAN ... OK [347.2 Kb in 0.78s]
  • Downloading evaluate from CRAN ... OK [83 Kb in 0.46s]
  • Downloading farver from CRAN ... OK [1.4 Mb in 0.67s]
  • Downloading fontawesome from CRAN ... OK [1.3 Mb in 0.45s]
  • Downloading gargle from CRAN ... OK [776.8 Kb in 1.0s]
  • Downloading httr from CRAN ... OK [474.6 Kb in 0.78s]
  • Downloading openssl from CRAN ... OK [3 Mb in 0.9s]
  • Downloading ggplot2 from P3M ... OK [4.1 Mb in 1.5s]
  • Downloading gtable from CRAN ... OK [221.3 Kb in 0.79s]
  • Downloading isoband from CRAN ... OK [1.9 Mb in 1.0s]
  • Downloading scales from CRAN ... OK [689.7 Kb in 0.77s]
  • Downloading labeling from CRAN ... OK [61.9 Kb in 0.56s]
  • Downloading munsell from P3M ... OK [240.6 Kb in 1.1s]
  • Downloading viridisLite from CRAN ... OK [1.2 Mb in 0.67s]
  • Downloading googledrive from CRAN ... OK [1.8 Mb in 0.76s]
  • Downloading uuid from P3M ... OK [47.6 Kb in 1.1s]
  • Downloading googlesheets4 from CRAN ... OK [504 Kb in 0.78s]
  • Downloading ids from CRAN ... OK [121.4 Kb in 0.67s]
  • Downloading rematch2 from CRAN ... OK [46.8 Kb in 0.55s]
  • Downloading gt from P3M ... OK [4.5 Mb in 1.4s]
  • Downloading htmlwidgets from CRAN ... OK [793.9 Kb in 1.0s]
  • Downloading knitr from P3M ... OK [1.5 Mb in 1.2s]
  • Downloading highr from CRAN ... OK [45.6 Kb in 0.55s]
  • Downloading xfun from P3M ... OK [431.1 Kb in 1.3s]
  • Downloading yaml from CRAN ... OK [113.1 Kb in 0.56s]
  • Downloading rmarkdown from P3M ... OK [2.6 Mb in 1.4s]
  • Downloading tinytex from P3M ... OK [137.3 Kb in 1.1s]
  • Downloading juicyjuice from CRAN ... OK [1.1 Mb in 0.78s]
  • Downloading markdown from CRAN ... OK [213.4 Kb in 0.79s]
  • Downloading reactable from CRAN ... OK [1 Mb in 0.56s]
  • Downloading reactR from CRAN ... OK [615.1 Kb in 0.89s]
  • Downloading xml2 from CRAN ... OK [1.5 Mb in 0.77s]
  • Downloading gtsummary from CRAN ... OK [1.9 Mb in 0.98s]
  • Downloading here from CRAN ... OK [62.9 Kb in 0.66s]
  • Downloading rprojroot from CRAN ... OK [111.2 Kb in 0.66s]
  • Downloading kableExtra from P3M ... OK [1.8 Mb in 1.3s]
  • Downloading rvest from P3M ... OK [215.4 Kb in 1.2s]
  • Downloading selectr from CRAN ... OK [481.9 Kb in 0.66s]
  • Downloading rstudioapi from P3M ... OK [318.1 Kb in 1.3s]
  • Downloading webshot from CRAN ... OK [211.4 Kb in 0.99s]
  • Downloading svglite from CRAN ... OK [661.2 Kb in 0.99s]
  • Downloading systemfonts from P3M ... OK [1.5 Mb in 1.0s]
  • Downloading lubridate from CRAN ... OK [963.5 Kb in 0.77s]
  • Downloading timechange from P3M ... OK [489.5 Kb in 1.2s]
  • Downloading modelr from CRAN ... OK [199.1 Kb in 0.77s]
  • Downloading pacman from CRAN ... OK [382.6 Kb in 1.1s]
  • Downloading remotes from P3M ... OK [390.2 Kb in 1.2s]
  • Downloading ragg from CRAN ... OK [416.8 Kb in 0.89s]
  • Downloading textshaping from CRAN ... OK [1.1 Mb in 0.67s]
  • Downloading readxl from CRAN ... OK [1.1 Mb in 0.77s]
  • Downloading reprex from P3M ... OK [493.6 Kb in 1.3s]
  • Downloading tidyverse from CRAN ... OK [421.2 Kb in 0.77s]
    Successfully downloaded 123 packages in 130 seconds.

Installing packages --------------------------------------------------------

  • Installing DBI ... OK [built from source and cached in 6.4s]
  • Installing R6 ... OK [installed binary and cached in 0.46s]
  • Installing RColorBrewer ... OK [installed binary and cached in 0.47s]
  • Installing Rcpp ... OK [installed binary and cached in 0.91s]
  • Installing jsonlite ... OK [installed binary and cached in 0.46s]
  • Installing curl ... FAILED
    Error: Error installing package 'curl':
    ================================
  • installing source package 'curl' ...
    ** package 'curl' successfully unpacked and MD5 sums checked
    ** using staged installation
    ** libs
    using C compiler: 'gcc.exe (GCC) 12.3.0'
    make[1]: Entering directory '/c/Users/fan90/Rtmp8mYszN/R.INSTALL2d4c6f2b3085/curl/src'
    make[1]: Leaving directory '/c/Users/fan90/Rtmp8mYszN/R.INSTALL2d4c6f2b3085/curl/src'
    make[1]: Entering directory '/c/Users/fan90/Rtmp8mYszN/R.INSTALL2d4c6f2b3085/curl/src'
    rm -f curl.dll callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o
    "C:/PROGRA1/R/R-431.2/bin/x64/Rscript.exe" "../tools/winlibs.R"
    [1] TRUE
    echo '#include <curl/curl.h>' | gcc -I../windows/libcurl/include -DCURL_STATICLIB -DSTRICT_R_HEADERS -std=gnu99 -E -xc -
    | grep "^[ \t]CURLOPT_.," | sed s/,// > ../tools/option_table.txt
    gcc -I"C:/PROGRA1/R/R-431.2/include" -DNDEBUG -I../windows/libcurl/include -DCURL_STATICLIB -DSTRICT_R_HEADERS -I"c:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c callbacks.c -o callbacks.o
    Cannot create temporary file in C:\WINDOWS: Permission denied
    make[1]: *** [C:/PROGRA1/R/R-431.2/etc/x64/Makeconf:265: callbacks.o] Error 127
    make[1]: Leaving directory '/c/Users/fan90/Rtmp8mYszN/R.INSTALL2d4c6f2b3085/curl/src'
    ERROR: compilation failed for package 'curl'
  • removing 'C:/Users/fan90/OneDrive/桌面/Emory/2024 spring/toolkit/data550-finalprojectPr/renv/staging/1/curl'
    install of package 'curl' failed [error code 1]
    Traceback (most recent calls last):
    13: renv::restore(prompt = FALSE)
    12: renv_restore_run_actions(project, diff, current, lockfile, rebuild)
    11: renv_install_impl(records)
    10: renv_install_staged(records)
    9: renv_install_default(records)
    8: handler(package, renv_install_package(record))
    7: renv_install_package(record)
    6: withCallingHandlers(renv_install_package_impl(record), error = function(e) writef("FAILED"))
    5: renv_install_package_impl(record)
    4: r_cmd_install(package, path)
    3: r_exec_error(package, output, "install", status)
    2: abort(all)
    1: stop(fallback)
    Execution halted
    make: *** [Makefile:16: install] Error 1
@benkeser
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benkeser commented Apr 21, 2024 via email

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@benkeser @sim960082