{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":167239786,"defaultBranch":"main","name":"stdpopsim","ownerLogin":"popsim-consortium","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-01-23T19:17:57.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/45011445?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1696975794.0","currentOid":""},"activityList":{"items":[{"before":"69260723f58d94169e1c7fe7e847994c1d0532db","after":"5f56d361137314a92e5eee3385335a6f2bb4dad4","ref":"refs/heads/main","pushedAt":"2024-04-05T16:41:53.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"add conditional to error formatting","shortMessageHtmlLink":"add conditional to error formatting"}},{"before":"fbb94c223751653889743df0cedf2153ff304ed7","after":"69260723f58d94169e1c7fe7e847994c1d0532db","ref":"refs/heads/main","pushedAt":"2024-04-05T16:09:18.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"silas suggestion","shortMessageHtmlLink":"silas suggestion"}},{"before":"c9f90866aca531d2732fe25e4ef0c9660dc71cb2","after":"fbb94c223751653889743df0cedf2153ff304ed7","ref":"refs/heads/main","pushedAt":"2024-02-20T17:31:39.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"a bit of grammar","shortMessageHtmlLink":"a bit of grammar"}},{"before":"b8c2329378acd97c25ac7007be8cea9d4220f720","after":"c9f90866aca531d2732fe25e4ef0c9660dc71cb2","ref":"refs/heads/main","pushedAt":"2023-11-14T21:33:51.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"add docs for using DFEs in other species: closes #1495 (and, makes catalog sections referenceable)","shortMessageHtmlLink":"add docs for using DFEs in other species: closes #1495 (and, makes ca…"}},{"before":"4766517bbc69dd4a70ce9f6250f297ea626d5991","after":"b8c2329378acd97c25ac7007be8cea9d4220f720","ref":"refs/heads/main","pushedAt":"2023-10-26T15:59:34.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"Vaquita QC","shortMessageHtmlLink":"Vaquita QC"}},{"before":"a588724fbcb16e6a961d9a9fd983e521bc4fe47f","after":"4766517bbc69dd4a70ce9f6250f297ea626d5991","ref":"refs/heads/main","pushedAt":"2023-10-25T19:51:00.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"andrewkern","name":"Andrew Kern","path":"/andrewkern","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7674197?s=80&v=4"},"commit":{"message":"new checksums (#1537)\n\nCo-authored-by: chriscrsmith ","shortMessageHtmlLink":"new checksums (#1537)"}},{"before":"92b8b36c53d7d8403c7fbccd1bd9b65a858efd23","after":"a588724fbcb16e6a961d9a9fd983e521bc4fe47f","ref":"refs/heads/main","pushedAt":"2023-10-25T17:39:00.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"andrewkern","name":"Andrew Kern","path":"/andrewkern","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7674197?s=80&v=4"},"commit":{"message":"vaquita annotations.py (#1520)\n\nsmall changes\r\n\r\nmd5sums updated\r\n\r\nCo-authored-by: chriscrsmith ","shortMessageHtmlLink":"vaquita annotations.py (#1520)"}},{"before":"95b3462ba42b1568d5b4d77c26b69716e238af66","after":"92b8b36c53d7d8403c7fbccd1bd9b65a858efd23","ref":"refs/heads/main","pushedAt":"2023-10-20T12:22:57.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jeromekelleher","name":"Jerome Kelleher","path":"/jeromekelleher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2664569?s=80&v=4"},"commit":{"message":"Merge pull request #1535 from hyanwong/patch-3\n\nAdd journal & volume / page to citation","shortMessageHtmlLink":"Merge pull request #1535 from hyanwong/patch-3"}},{"before":"039df5462ad6907768330b846551854cd88331b3","after":"95b3462ba42b1568d5b4d77c26b69716e238af66","ref":"refs/heads/main","pushedAt":"2023-10-19T03:51:11.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"Implemented QC for three mouse demographic models","shortMessageHtmlLink":"Implemented QC for three mouse demographic models"}},{"before":"b52b95cd6b5d5e6bb06dbac74b43da081917d0db","after":"039df5462ad6907768330b846551854cd88331b3","ref":"refs/heads/main","pushedAt":"2023-10-18T20:48:49.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nspope","name":"Nate Pope","path":"/nspope","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5767783?s=80&v=4"},"commit":{"message":"Fix find-conda step in workflow; bump cache (#1534)","shortMessageHtmlLink":"Fix find-conda step in workflow; bump cache (#1534)"}},{"before":"bd0575576de18b0a538df27e31ab822a8c3cf7aa","after":"b52b95cd6b5d5e6bb06dbac74b43da081917d0db","ref":"refs/heads/main","pushedAt":"2023-10-18T18:03:24.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nspope","name":"Nate Pope","path":"/nspope","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5767783?s=80&v=4"},"commit":{"message":"Cache bump (#1532)","shortMessageHtmlLink":"Cache bump (#1532)"}},{"before":"496a879e6579b353fd2db1c5b24174b581b45ddc","after":"bd0575576de18b0a538df27e31ab822a8c3cf7aa","ref":"refs/heads/main","pushedAt":"2023-10-17T19:23:14.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"Update stdpopsim/catalog/PhoSin/demographic_models.py\n\nCo-authored-by: Peter Ralph ","shortMessageHtmlLink":"Update stdpopsim/catalog/PhoSin/demographic_models.py"}},{"before":"9fef7e7e6b551d3d5a3f5cce8a329e105bda2561","after":"496a879e6579b353fd2db1c5b24174b581b45ddc","ref":"refs/heads/main","pushedAt":"2023-10-17T06:08:38.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"add table values to match published demographic models","shortMessageHtmlLink":"add table values to match published demographic models"}},{"before":"b185585b616537bab6b8dd0951be3dc0d553b890","after":"9fef7e7e6b551d3d5a3f5cce8a329e105bda2561","ref":"refs/heads/main","pushedAt":"2023-10-17T05:26:46.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"bug fix on annotation script","shortMessageHtmlLink":"bug fix on annotation script"}},{"before":"5f2e52886dcae54f3f7bcc4aeba8021e9acce5d5","after":"b185585b616537bab6b8dd0951be3dc0d553b890","ref":"refs/heads/main","pushedAt":"2023-10-11T01:35:17.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"fixup to OrySat QC (and additions to catalogue)","shortMessageHtmlLink":"fixup to OrySat QC (and additions to catalogue)"}},{"before":"39845db9e81f971cf12332db9054dd478b2460ee","after":"5f2e52886dcae54f3f7bcc4aeba8021e9acce5d5","ref":"refs/heads/main","pushedAt":"2023-10-10T22:34:36.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"modified citation info for Lauterbur et al. (2023) in docs\nImplemented PhoSin species (Vaquita). First version (before QC)\n\nnow also adding the test file\n\nadded explanation for recombination rate and fixed issues in docs\n\nApply suggestions from code review\n\nUpdate stdpopsim/catalog/PhoSin/species.py\n\ncache bump","shortMessageHtmlLink":"modified citation info for Lauterbur et al. (2023) in docs"}},{"before":"262ad3952538264604e2168adec79046d2153c54","after":null,"ref":"refs/heads/vaquita_species_add","pushedAt":"2023-10-10T22:09:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"}},{"before":null,"after":"262ad3952538264604e2168adec79046d2153c54","ref":"refs/heads/vaquita_species_add","pushedAt":"2023-10-10T22:09:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"modified citation info for Lauterbur et al. (2023) in docs\nImplemented PhoSin species (Vaquita). First version (before QC)\n\nnow also adding the test file\n\nadded explanation for recombination rate and fixed issues in docs\n\nApply suggestions from code review\n\nUpdate stdpopsim/catalog/PhoSin/species.py\n\ncache bump","shortMessageHtmlLink":"modified citation info for Lauterbur et al. (2023) in docs"}},{"before":"d89010fe3489f1ee6f44d02871a5ef2ae33815c0","after":"39845db9e81f971cf12332db9054dd478b2460ee","ref":"refs/heads/main","pushedAt":"2023-10-10T16:32:47.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"trying to get pre-commit to work","shortMessageHtmlLink":"trying to get pre-commit to work"}},{"before":"91b99819a27b82e6e31e22cb60be1a440269a42e","after":null,"ref":"refs/heads/dependabot/pip/requirements/CI/sphinx-7.2.4","pushedAt":"2023-09-04T21:10:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"ec2cbcbd80b41abf7ff41ef3aa31758412f18295","ref":"refs/heads/dependabot/pip/requirements/CI/sphinx-7.2.5","pushedAt":"2023-09-04T21:10:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump sphinx from 5.0.2 to 7.2.5 in /requirements/CI\n\nBumps [sphinx](https://github.com/sphinx-doc/sphinx) from 5.0.2 to 7.2.5.\n- [Release notes](https://github.com/sphinx-doc/sphinx/releases)\n- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)\n- [Commits](https://github.com/sphinx-doc/sphinx/compare/v5.0.2...v7.2.5)\n\n---\nupdated-dependencies:\n- dependency-name: sphinx\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump sphinx from 5.0.2 to 7.2.5 in /requirements/CI"}},{"before":"3a90b18e28dc9f623264d6d8cedd98d2034214f1","after":null,"ref":"refs/heads/dependabot/pip/requirements/CI/pytest-7.4.0","pushedAt":"2023-09-04T21:09:59.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"dcd4a2edc1268c470dd8b31c66cf922d98a85f0a","ref":"refs/heads/dependabot/pip/requirements/CI/pytest-7.4.1","pushedAt":"2023-09-04T21:09:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump pytest from 7.3.2 to 7.4.1 in /requirements/CI\n\nBumps [pytest](https://github.com/pytest-dev/pytest) from 7.3.2 to 7.4.1.\n- [Release notes](https://github.com/pytest-dev/pytest/releases)\n- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)\n- [Commits](https://github.com/pytest-dev/pytest/compare/7.3.2...7.4.1)\n\n---\nupdated-dependencies:\n- dependency-name: pytest\n dependency-type: direct:production\n update-type: version-update:semver-minor\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump pytest from 7.3.2 to 7.4.1 in /requirements/CI"}},{"before":"c81c6f3f5366e226161d5053348d8223ffe14340","after":null,"ref":"refs/heads/dependabot/pip/requirements/CI/sphinx-7.2.2","pushedAt":"2023-08-28T21:12:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"91b99819a27b82e6e31e22cb60be1a440269a42e","ref":"refs/heads/dependabot/pip/requirements/CI/sphinx-7.2.4","pushedAt":"2023-08-28T21:12:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump sphinx from 5.0.2 to 7.2.4 in /requirements/CI\n\nBumps [sphinx](https://github.com/sphinx-doc/sphinx) from 5.0.2 to 7.2.4.\n- [Release notes](https://github.com/sphinx-doc/sphinx/releases)\n- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)\n- [Commits](https://github.com/sphinx-doc/sphinx/compare/v5.0.2...v7.2.4)\n\n---\nupdated-dependencies:\n- dependency-name: sphinx\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump sphinx from 5.0.2 to 7.2.4 in /requirements/CI"}},{"before":"d6ca95e3669b2708b18b177670593f83934466d4","after":null,"ref":"refs/heads/dependabot/pip/requirements/CI/sphinx-7.1.2","pushedAt":"2023-08-21T21:15:31.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"c81c6f3f5366e226161d5053348d8223ffe14340","ref":"refs/heads/dependabot/pip/requirements/CI/sphinx-7.2.2","pushedAt":"2023-08-21T21:15:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump sphinx from 5.0.2 to 7.2.2 in /requirements/CI\n\nBumps [sphinx](https://github.com/sphinx-doc/sphinx) from 5.0.2 to 7.2.2.\n- [Release notes](https://github.com/sphinx-doc/sphinx/releases)\n- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)\n- [Commits](https://github.com/sphinx-doc/sphinx/compare/v5.0.2...v7.2.2)\n\n---\nupdated-dependencies:\n- dependency-name: sphinx\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump sphinx from 5.0.2 to 7.2.2 in /requirements/CI"}},{"before":"d923127b496ba0896fb4a4930c4c07c1e7a66c90","after":"d89010fe3489f1ee6f44d02871a5ef2ae33815c0","ref":"refs/heads/main","pushedAt":"2023-08-19T07:02:30.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"petrelharp","name":"Peter Ralph","path":"/petrelharp","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1046249?s=80&v=4"},"commit":{"message":"newer actions/cache","shortMessageHtmlLink":"newer actions/cache"}},{"before":"81b32c87a74c745f2eca46021773e76cdc5dc041","after":"86b96c95b5b8c24cdc498e4cefbac2ca8ea1db86","ref":"refs/heads/dependabot/pip/requirements/CI/flake8-6.1.0","pushedAt":"2023-08-09T22:24:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump flake8 from 5.0.4 to 6.1.0 in /requirements/CI\n\nBumps [flake8](https://github.com/pycqa/flake8) from 5.0.4 to 6.1.0.\n- [Commits](https://github.com/pycqa/flake8/compare/5.0.4...6.1.0)\n\n---\nupdated-dependencies:\n- dependency-name: flake8\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump flake8 from 5.0.4 to 6.1.0 in /requirements/CI"}},{"before":"fa87a639b451c0501eb0aa733ae5f8d416bd15ee","after":"d6ca95e3669b2708b18b177670593f83934466d4","ref":"refs/heads/dependabot/pip/requirements/CI/sphinx-7.1.2","pushedAt":"2023-08-09T22:24:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump sphinx from 4.3.2 to 7.1.2 in /requirements/CI\n\nBumps [sphinx](https://github.com/sphinx-doc/sphinx) from 4.3.2 to 7.1.2.\n- [Release notes](https://github.com/sphinx-doc/sphinx/releases)\n- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)\n- [Commits](https://github.com/sphinx-doc/sphinx/compare/v4.3.2...v7.1.2)\n\n---\nupdated-dependencies:\n- dependency-name: sphinx\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump sphinx from 4.3.2 to 7.1.2 in /requirements/CI"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEKRSwcwA","startCursor":null,"endCursor":null}},"title":"Activity · popsim-consortium/stdpopsim"}