{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":317648070,"defaultBranch":"main","name":"r-scan2","ownerLogin":"parklab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-12-01T19:36:21.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/1216524?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1606851419.0","currentOid":""},"activityList":{"items":[{"before":"22a0a754316ee603a9ebea77013bd2c9d17561a7","after":"4f519e737e4b946977e2bad93e2402c289ed87dc","ref":"refs/heads/main","pushedAt":"2024-05-22T21:21:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"plot.sbs96/id83(): add title.cex, uniform.y.axis and rename cex.names to axis.cex","shortMessageHtmlLink":"plot.sbs96/id83(): add title.cex, uniform.y.axis and rename cex.names…"}},{"before":"d34262e590d4b0571257e3f4c9cfeded17d11c7f","after":"22a0a754316ee603a9ebea77013bd2c9d17561a7","ref":"refs/heads/main","pushedAt":"2024-05-20T22:00:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add filters for MDA indels","shortMessageHtmlLink":"Add filters for MDA indels"}},{"before":"644efe51b7d292d58f474052d046419e837ecaf8","after":"d34262e590d4b0571257e3f4c9cfeded17d11c7f","ref":"refs/heads/main","pushedAt":"2024-05-08T16:49:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Fix incorrect sensitivity calculation: lost minus sign in last commit","shortMessageHtmlLink":"Fix incorrect sensitivity calculation: lost minus sign in last commit"}},{"before":"988ef01887dc88f7496191b33542efdd1b7848cd","after":"644efe51b7d292d58f474052d046419e837ecaf8","ref":"refs/heads/main","pushedAt":"2024-05-08T13:17:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"data(type=shared): fix add.sample.column bug","shortMessageHtmlLink":"data(type=shared): fix add.sample.column bug"}},{"before":"e4d7b1ef1d21221300a5fa4ebd8bdb06cc6e7250","after":"988ef01887dc88f7496191b33542efdd1b7848cd","ref":"refs/heads/main","pushedAt":"2024-05-07T15:21:17.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add cross-sample panel filter parameters to sfp. Not currently configurable by user","shortMessageHtmlLink":"Add cross-sample panel filter parameters to sfp. Not currently config…"}},{"before":"e0e4589c515c2f1dcf4c6ca9ffd940557e4456a9","after":"e4d7b1ef1d21221300a5fa4ebd8bdb06cc6e7250","ref":"refs/heads/main","pushedAt":"2024-05-07T02:22:26.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add ... passthroughs to many plotting functions","shortMessageHtmlLink":"Add ... passthroughs to many plotting functions"}},{"before":"418952ede6ddd6a912f502252d92002a79bd00b1","after":"e0e4589c515c2f1dcf4c6ca9ffd940557e4456a9","ref":"refs/heads/main","pushedAt":"2024-05-06T20:29:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"ab.distn(): use the correct mapfn for type=af","shortMessageHtmlLink":"ab.distn(): use the correct mapfn for type=af"}},{"before":"767eeb630b7599b56116eb698721b01dedf520a4","after":"418952ede6ddd6a912f502252d92002a79bd00b1","ref":"refs/heads/main","pushedAt":"2024-05-02T18:23:08.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Save the original @mutburden slot since the parameters used to generate it may not be in the vary_params grid","shortMessageHtmlLink":"Save the original @mutburden slot since the parameters used to genera…"}},{"before":"5c15c16bbbd7ae36253e7ac070c6ca4f7a5d6b08","after":"767eeb630b7599b56116eb698721b01dedf520a4","ref":"refs/heads/main","pushedAt":"2024-05-01T16:29:59.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add approxify.to.density()","shortMessageHtmlLink":"Add approxify.to.density()"}},{"before":"df968c5603541284ef0985c1b15687c3249624b8","after":"5c15c16bbbd7ae36253e7ac070c6ca4f7a5d6b08","ref":"refs/heads/main","pushedAt":"2024-05-01T10:26:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"359c60e593611a276a361fcab8710c3fc131f0c6","after":"df968c5603541284ef0985c1b15687c3249624b8","ref":"refs/heads/main","pushedAt":"2024-05-01T09:58:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add rescue.candidate; disable mutsig.rescue.one(summary.SCAN2) for now","shortMessageHtmlLink":"Add rescue.candidate; disable mutsig.rescue.one(summary.SCAN2) for now"}},{"before":"aafcf3c222cd90c5e7e228ef9113063d4af876c6","after":"359c60e593611a276a361fcab8710c3fc131f0c6","ref":"refs/heads/main","pushedAt":"2024-05-01T08:46:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add more convenience accessors: amp(), bulk(), sex(), config(), version()","shortMessageHtmlLink":"Add more convenience accessors: amp(), bulk(), sex(), config(), versi…"}},{"before":"c5594c1a6fcca89465f6edcb7154cdb976cb19eb","after":"aafcf3c222cd90c5e7e228ef9113063d4af876c6","ref":"refs/heads/main","pushedAt":"2024-05-01T08:24:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"abmodel.cov(): ensure matching at values for signature=SCAN2; rewrite helper.abmodel.cov() to avoid calling approx() when type=fit","shortMessageHtmlLink":"abmodel.cov(): ensure matching at values for signature=SCAN2; rewrite…"}},{"before":"ce8435b2cc1c3c99ca21abae5f8d44e4ad57fac2","after":"c5594c1a6fcca89465f6edcb7154cdb976cb19eb","ref":"refs/heads/main","pushedAt":"2024-05-01T08:12:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Update max.d -> bin.max","shortMessageHtmlLink":"Update max.d -> bin.max"}},{"before":"39ef711e33b7cbf1a27fa067098a367010b610b4","after":"ce8435b2cc1c3c99ca21abae5f8d44e4ad57fac2","ref":"refs/heads/main","pushedAt":"2024-05-01T08:04:22.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Use coarser bins for approx.abmodel.cov","shortMessageHtmlLink":"Use coarser bins for approx.abmodel.cov"}},{"before":"a5694cd6c9953ed50b200e06962b6b17e78a2a02","after":"39ef711e33b7cbf1a27fa067098a367010b610b4","ref":"refs/heads/main","pushedAt":"2024-05-01T05:52:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add summarize.mutsig.rescue(); delete dead code","shortMessageHtmlLink":"Add summarize.mutsig.rescue(); delete dead code"}},{"before":"8f72433859d49bf92310750650dd6851027f85eb","after":"a5694cd6c9953ed50b200e06962b6b17e78a2a02","ref":"refs/heads/main","pushedAt":"2024-04-30T11:45:37.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Comments","shortMessageHtmlLink":"Comments"}},{"before":"e271ce145886792af2e05af3dd64ef94e56c53e4","after":"8f72433859d49bf92310750650dd6851027f85eb","ref":"refs/heads/main","pushedAt":"2024-04-30T06:32:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Supply gp.mu/gp.sd to compress.spatial.sens; ensure quantize.raw() return integer","shortMessageHtmlLink":"Supply gp.mu/gp.sd to compress.spatial.sens; ensure quantize.raw() re…"}},{"before":"517eae49802be72fe63ac2c73aaaaa1e3f3776b2","after":"e271ce145886792af2e05af3dd64ef94e56c53e4","ref":"refs/heads/main","pushedAt":"2024-04-30T06:07:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Fix column names in data(), passing(), training()","shortMessageHtmlLink":"Fix column names in data(), passing(), training()"}},{"before":"2aa63580b93365c25bb2366a8fdef04e4ee5a166","after":"517eae49802be72fe63ac2c73aaaaa1e3f3776b2","ref":"refs/heads/main","pushedAt":"2024-04-30T05:59:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"training(): add initial sample column","shortMessageHtmlLink":"training(): add initial sample column"}},{"before":"9a0bdc8ac6f2f4752851d62a5d69b058345f183d","after":"2aa63580b93365c25bb2366a8fdef04e4ee5a166","ref":"refs/heads/main","pushedAt":"2024-04-30T05:52:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"data(): Always add an initial column with name()","shortMessageHtmlLink":"data(): Always add an initial column with name()"}},{"before":"562ed193846354dd9e75d70602d6c204a190aa06","after":"9a0bdc8ac6f2f4752851d62a5d69b058345f183d","ref":"refs/heads/main","pushedAt":"2024-04-30T05:44:01.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Use name()","shortMessageHtmlLink":"Use name()"}},{"before":"17ebef084c1b24cc2509f3d6f14ff72f8fe2f755","after":"562ed193846354dd9e75d70602d6c204a190aa06","ref":"refs/heads/main","pushedAt":"2024-04-30T05:25:22.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"No longer keep resampled.training.sites in @gatk.shared; finalize quantize.raw(); save gp.mu/gp.sd in compress.spatial.sens()","shortMessageHtmlLink":"No longer keep resampled.training.sites in @gatk.shared; finalize qua…"}},{"before":"1c232298763af60e719b9169070bdf55f3752317","after":"17ebef084c1b24cc2509f3d6f14ff72f8fe2f755","ref":"refs/heads/main","pushedAt":"2024-04-29T20:50:10.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Set seed in compute.sensitivity.models() to ensure reproducibility","shortMessageHtmlLink":"Set seed in compute.sensitivity.models() to ensure reproducibility"}},{"before":"d33e1d75190791726112a77d96e37051822724c4","after":"1c232298763af60e719b9169070bdf55f3752317","ref":"refs/heads/main","pushedAt":"2024-04-27T00:43:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}},{"before":"5c8f4c6854b9676ae475aa8b47e5bf13215eeafd","after":"d33e1d75190791726112a77d96e37051822724c4","ref":"refs/heads/main","pushedAt":"2024-04-27T00:33:49.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Add @gatk.shared to summary","shortMessageHtmlLink":"Add @gatk.shared to summary"}},{"before":"fd24e2de8378fea45ba9699d6e4c375ff80f5cf7","after":"5c8f4c6854b9676ae475aa8b47e5bf13215eeafd","ref":"refs/heads/main","pushedAt":"2024-04-25T11:22:25.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"61e6abadfa3de60bf1700b2456ec9aa6e38b6c09","after":"fd24e2de8378fea45ba9699d6e4c375ff80f5cf7","ref":"refs/heads/main","pushedAt":"2024-04-23T07:48:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Run gatk.summary() before the rest of summarization to avoid an altered @gatk when preserve.object=FALSE","shortMessageHtmlLink":"Run gatk.summary() before the rest of summarization to avoid an altered "}},{"before":"db6d13dd20178689847a74c84b3b6aeebfaa2927","after":"61e6abadfa3de60bf1700b2456ec9aa6e38b6c09","ref":"refs/heads/main","pushedAt":"2024-04-23T07:04:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Update slot names","shortMessageHtmlLink":"Update slot names"}},{"before":"6d598969d46d321c4e73961fed4b6dc4e58d2c6c","after":"db6d13dd20178689847a74c84b3b6aeebfaa2927","ref":"refs/heads/main","pushedAt":"2024-04-23T06:37:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jluquette","name":null,"path":"/jluquette","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1824050?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUWLt3AA","startCursor":null,"endCursor":null}},"title":"Activity · parklab/r-scan2"}