{"payload":{"pageCount":5,"repositories":[{"type":"Public","name":"monarch-actions-switch-account","owner":"niaid","isFork":false,"description":"GitHub Action used to switch between Monarch Spaces accounts","allTopics":["spaces","monarch","gha"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":13,"issueCount":8,"starsCount":1,"forksCount":0,"license":"MIT License","participation":[0,0,2,0,1,0,0,0,0,0,2,0,0,4,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T23:52:23.880Z"}},{"type":"Public","name":"terraform-aws-managed-config-rules","owner":"niaid","isFork":false,"description":"AWS Config Managed Rules Terraform Module","allTopics":["aws-config","terraform-module","aws-config-rules","aws","terraform","compliance"],"primaryLanguage":{"name":"HCL","color":"#844FBA"},"pullRequestCount":2,"issueCount":1,"starsCount":9,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T15:42:23.134Z"}},{"type":"Public","name":"image_portal_workflows","owner":"niaid","isFork":false,"description":"Workflows related to project previously referred to as \"Hedwig\"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":28,"starsCount":5,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T18:59:56.259Z"}},{"type":"Public","name":"tomojs-pytools","owner":"niaid","isFork":false,"description":"","allTopics":["hedwig","niaid-hedwig","niaid-hedwig-tomojs"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":3,"starsCount":3,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T18:33:45.676Z"}},{"type":"Public","name":"dsb","owner":"niaid","isFork":false,"description":"Normalize CITEseq Data","allTopics":["cite-seq","niaid-tsang-lab"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":2,"starsCount":61,"forksCount":13,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T09:56:08.173Z"}},{"type":"Public","name":"niaid-design-system","owner":"niaid","isFork":false,"description":"Welcome to the NIAID Design System.","allTopics":["design-system"],"primaryLanguage":{"name":"Twig","color":"#c1d026"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T20:19:40.549Z"}},{"type":"Public","name":"moleculer-netsparker-cloud","owner":"niaid","isFork":false,"description":"Moleculer mixin for consuming Netsparker Cloud services.","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-08T20:27:23.026Z"}},{"type":"Public","name":"netsparker-cloud-js","owner":"niaid","isFork":false,"description":"JavaScript client for consuming the Netsparker Cloud API.","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-08T18:20:21.712Z"}},{"type":"Public","name":"msa","owner":"niaid","isFork":true,"description":"Modular BioJS compoment for a multiple sequence alignment","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":79,"license":"Boost Software License 1.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T10:05:43.939Z"}},{"type":"Public","name":"terraform-aws-notify-slack","owner":"niaid","isFork":true,"description":"Terraform module which creates SNS topic and Lambda function which sends notifications to Slack 🇺🇦","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":330,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-01T18:13:01.600Z"}},{"type":"Public","name":"imaris_extensions","owner":"niaid","isFork":false,"description":"Algorithmic and Utility Extensions for the Imaris Program","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":13,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-01T17:56:55.878Z"}},{"type":"Public","name":"virome-pipeline","owner":"niaid","isFork":false,"description":"This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.","allTopics":["bioinformatics","virus","metagenomics","bcbb-training"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-25T13:36:20.839Z"}},{"type":"Public","name":"trellaction-workflow_test","owner":"niaid","isFork":true,"description":"Trellaction is a Github Action workflow used to automatically create Github issues for Github security alerts. Those issues are then copied as Trello cards onto a designated Trello board in a designated column.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T15:31:32.702Z"}},{"type":"Public","name":"nbp_events_niaid","owner":"niaid","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T14:38:50.531Z"}},{"type":"Public","name":"openapi-generator","owner":"niaid","isFork":true,"description":"OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec (v2, v3)","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":9,"issueCount":0,"starsCount":0,"forksCount":6203,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T13:59:05.890Z"}},{"type":"Public","name":"yamlfmt","owner":"niaid","isFork":true,"description":"An extensible command line tool or library to format yaml files.","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":37,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T18:24:29.308Z"}},{"type":"Public","name":"monarch-actions-key-writer","owner":"niaid","isFork":true,"description":"Monarch GitHub Action that installs SSH key to .ssh","allTopics":["spaces","gha","niaid-oeb-platform-core","monach"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":83,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T18:24:01.363Z"}},{"type":"Public","name":"terraform-aws-ssm-patch-manager","owner":"niaid","isFork":true,"description":"Terraform module to provision AWS SSM Patch Manager maintenance window tasks, targets, patch baseline, patch groups and an s3 bucket for storing patch task logs","allTopics":[],"primaryLanguage":{"name":"HCL","color":"#844FBA"},"pullRequestCount":4,"issueCount":0,"starsCount":0,"forksCount":17,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T16:06:02.488Z"}},{"type":"Public","name":"fsc","owner":"niaid","isFork":false,"description":"Code for: Integrating population and single-cell variations in vaccine responses identifies a naturally adjuvanted human immune setpoint","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T01:35:38.579Z"}},{"type":"Public","name":"tbportals.depot.api","owner":"niaid","isFork":false,"description":"R package to the TB Portals Analytic API for easy retrieval of information from TB DEPOT. ","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-12T18:41:07.936Z"}},{"type":"Public","name":"SIGNAL","owner":"niaid","isFork":false,"description":"TRIAGE (Throughput Ranking by Iterative Analysis of Genomic Enrichment)","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":2,"starsCount":5,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-02T18:12:34.192Z"}},{"type":"Public","name":"meshconvert","owner":"niaid","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-27T16:39:24.090Z"}},{"type":"Public","name":"computational.flow.cytometry","owner":"niaid","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T19:07:30.126Z"}},{"type":"Public","name":"ACE","owner":"niaid","isFork":false,"description":"Seminar materials for BCBB ACE Workshops","allTopics":["ace","bcbb-training"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":26,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T17:32:33.206Z"}},{"type":"Public","name":"sitk-ibex","owner":"niaid","isFork":false,"description":"Aligning images acquired with the IBEX microscopy imaging technique","allTopics":["python","microscopy","image-registration"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":17,"forksCount":5,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T17:11:25.870Z"}},{"type":"Public","name":"UMI-pacbio-pipeline","owner":"niaid","isFork":false,"description":"Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).","allTopics":["pacbio","umi","pacbio-data","network-filtering","unique-molecular-identifiers"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-19T14:20:40.961Z"}},{"type":"Public","name":"dicom2stl","owner":"niaid","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-08T10:01:43.197Z"}},{"type":"Public","name":"cloudwatcher","owner":"niaid","isFork":false,"description":"A tool for monitoring AWS CloudWatch metrics and logs","allTopics":["python","cli","aws","cloudwatch","cloudwatch-logs","cloudwatch-metrics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":3,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-02T16:28:17.570Z"}},{"type":"Public","name":"retired","owner":"niaid","isFork":false,"description":"Products in this repository have been retired, but have been made available. They are no longer maintained by NIAID. If they have been implemented elsewhere, a link will be provided. ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-09T16:45:49.765Z"}},{"type":"Public","name":"microbiome-analysis-2023","owner":"niaid","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-06T14:53:12.965Z"}}],"repositoryCount":133,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}