{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"pVACtools","owner":"griffithlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":10,"issueCount":84,"starsCount":127,"forksCount":58,"license":"BSD 3-Clause Clear License","participation":[9,19,24,7,0,11,3,1,6,12,0,0,0,3,3,0,4,0,0,0,0,4,6,1,0,0,1,1,2,0,2,10,5,9,1,7,16,7,28,3,14,3,0,1,7,2,9,1,23,2,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T15:52:09.902Z"}},{"type":"Public","name":"civic-v2","owner":"griffithlab","isFork":false,"description":"CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer","allTopics":["cancer","variants","cancer-genomics","biocuration","nci-itcr","variant-curation"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":8,"issueCount":70,"starsCount":19,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T14:32:34.312Z"}},{"type":"Public","name":"rnabio.org","owner":"griffithlab","isFork":false,"description":"website for the rnaseq course","allTopics":[],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":2,"issueCount":19,"starsCount":83,"forksCount":34,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T15:38:36.865Z"}},{"type":"Public","name":"GenVisR","owner":"griffithlab","isFork":false,"description":"Genome data visualizations","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":4,"issueCount":56,"starsCount":203,"forksCount":62,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-12T14:30:42.738Z"}},{"type":"Public","name":"docker-pvactools","owner":"griffithlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":7,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-08T20:40:06.261Z"}},{"type":"Public","name":"civicpy","owner":"griffithlab","isFork":false,"description":"A python interface for the CIViC db application","allTopics":["civic"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":12,"issueCount":13,"starsCount":7,"forksCount":5,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,11,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T17:34:03.695Z"}},{"type":"Public","name":"pVACtools_Intro_Course","owner":"griffithlab","isFork":false,"description":"Getting started with pVACtools - pVACseq, pVACbind and pVACview","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":"Creative Commons Attribution 4.0 International","participation":[0,0,0,4,9,5,2,24,7,0,0,0,0,0,0,8,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-25T19:25:45.864Z"}},{"type":"Public","name":"CIVIC_SVI_Course","owner":"griffithlab","isFork":false,"description":"A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-25T19:25:39.923Z"}},{"type":"Public","name":"neoag_vaccine_scripts","owner":"griffithlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":7,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-22T16:29:46.591Z"}},{"type":"Public","name":"DeepImmuno","owner":"griffithlab","isFork":true,"description":"Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":25,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-14T17:28:01.328Z"}},{"type":"Public","name":"civic-meeting","owner":"griffithlab","isFork":false,"description":"Repo for advertising and organizing CIViC hackathon/meeting activities","allTopics":["civic","hackathon","curation","civic-meetings"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":7,"starsCount":10,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-12T19:49:17.347Z"}},{"type":"Public","name":"civic-docs","owner":"griffithlab","isFork":false,"description":"Source code for the civicdb.org docs","allTopics":["civic"],"primaryLanguage":null,"pullRequestCount":1,"issueCount":18,"starsCount":4,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-11T20:58:06.596Z"}},{"type":"Public","name":"griffithlab.org","owner":"griffithlab","isFork":false,"description":"Griffith lab research website","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":1,"starsCount":14,"forksCount":27,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-27T00:16:49.963Z"}},{"type":"Public","name":"bigmhc","owner":"griffithlab","isFork":true,"description":"BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":8,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-12T20:49:55.494Z"}},{"type":"Public","name":"Immuno_Workflow_Course","owner":"griffithlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-08T19:37:21.621Z"}},{"type":"Public","name":"docker-vatools","owner":"griffithlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T15:38:34.077Z"}},{"type":"Public","name":"VAtools","owner":"griffithlab","isFork":false,"description":"A set of tools to annotate VCF files with expression and readcount data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":25,"forksCount":10,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T15:33:45.511Z"}},{"type":"Public","name":"civic-client","owner":"griffithlab","isFork":false,"description":"Web client for CIViC: Clinical Interpretations of Variants in Cancer","allTopics":["cancer-genomics","front-end-framework","nci-itcr","javascript","civic","cancer","variants"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":13,"issueCount":230,"starsCount":50,"forksCount":28,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-28T01:44:36.367Z"}},{"type":"Public","name":"regtools","owner":"griffithlab","isFork":false,"description":"Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":31,"starsCount":113,"forksCount":24,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-31T17:20:36.948Z"}},{"type":"Public","name":"pmbio.org","owner":"griffithlab","isFork":false,"description":"Website for the precision medicine workshop","allTopics":[],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":1,"issueCount":12,"starsCount":41,"forksCount":19,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-23T21:43:09.516Z"}},{"type":"Public","name":"civic-server","owner":"griffithlab","isFork":false,"description":"Backend Server for CIViC Project","allTopics":["cancer","variants","cancer-genomics","nci-itcr","ruby","civic","backend-server"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":13,"issueCount":52,"starsCount":39,"forksCount":32,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-06T18:25:34.324Z"}},{"type":"Public","name":"genviz.org","owner":"griffithlab","isFork":false,"description":"Genomic data interpretation and visualization Workshop","allTopics":[],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":5,"issueCount":14,"starsCount":18,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-19T21:40:23.889Z"}},{"type":"Public","name":"DeepNeo","owner":"griffithlab","isFork":true,"description":"identification of immunogenic neoepitopes","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-05T08:23:51.738Z"}},{"type":"Public","name":"rnaseq_tutorial","owner":"griffithlab","isFork":false,"description":"Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":5,"starsCount":1314,"forksCount":617,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-31T18:45:10.223Z"}},{"type":"Public","name":"aml31","owner":"griffithlab","isFork":false,"description":"Resource website for the AML31 publication","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-13T18:32:07.248Z"}},{"type":"Public","name":"anchor_huiming_etal_2023","owner":"griffithlab","isFork":false,"description":"Code for computational workflows and analyses relating to \"Computational prediction of MHC anchor locations guide neoantigen identification and prioritization\"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-23T21:42:18.985Z"}},{"type":"Public","name":"itcr2022","owner":"griffithlab","isFork":false,"description":"Jekyll site for ITCR 2022 conference","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-22T21:39:42.153Z"}},{"type":"Public","name":"precision_medicine_KISC","owner":"griffithlab","isFork":false,"description":"This is the precision medicine KISC site/lab manual","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-07T15:23:18.952Z"}},{"type":"Public","name":"civic-panel","owner":"griffithlab","isFork":false,"description":"Tools for selecting targets for and designing panel for various assays","allTopics":["civic"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":1,"starsCount":1,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-21T21:46:56.922Z"}},{"type":"Public","name":"gen-viz-lectures","owner":"griffithlab","isFork":false,"description":"lectures for genviz.org workshop kept separate for performance","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-27T19:19:02.084Z"}}],"repositoryCount":72,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}