{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"search-adaptor","owner":"dbmi-pitt","isFork":false,"description":"An adaptor used to create application, domain specific RESTful web service against Elasticsearch","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T12:33:24.891Z"}},{"type":"Public","name":"search-ui","owner":"dbmi-pitt","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T14:34:07.679Z"}},{"type":"Public","name":"ClinicalTransformerNER","owner":"dbmi-pitt","isFork":true,"description":"a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":28,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-11T16:59:04.062Z"}},{"type":"Public","name":"SDoH_SODA","owner":"dbmi-pitt","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T22:13:02.135Z"}},{"type":"Public","name":"hades_proxy_manager","owner":"dbmi-pitt","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-28T20:48:12.205Z"}},{"type":"Public","name":"SODA_Docker","owner":"dbmi-pitt","isFork":true,"description":"repo for pipeline development","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-14T14:47:22.234Z"}},{"type":"Public","name":"sandbox-community-edition","owner":"dbmi-pitt","isFork":true,"description":"Repository for the free community edition of the sandbox","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":15,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-08T16:02:10.921Z"}},{"type":"Public","name":"ULTRA","owner":"dbmi-pitt","isFork":true,"description":"A foundation model for knowledge graph reasoning","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":52,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-22T20:11:29.205Z"}},{"type":"Public","name":"jupyterlab-limit-output","owner":"dbmi-pitt","isFork":true,"description":"Limit long text output for a single JupyterLab mime render.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":9,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-25T17:26:49.619Z"}},{"type":"Public","name":"np-terminology-imports","owner":"dbmi-pitt","isFork":false,"description":"A natural product terminology that maps botanical natural product Latin binomials to chemical constituents (e.g., metabolites), common names, and spelling variations. The vocabulary is represented using the OMOP vocabulary schema but is not dependent on OMOP/OHDSI tools. ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":2,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-15T16:58:28.206Z"}},{"type":"Public","name":"rio-programs-strategic-initiatives","owner":"dbmi-pitt","isFork":false,"description":"Repository for tracking RIO and Strategic Initiatives - Jonathan and Kay","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-01T19:26:57.518Z"}},{"type":"Public","name":"np_name_finder","owner":"dbmi-pitt","isFork":false,"description":"A project to use different computational approaches to identify natural product mentions in unstructured character strings. ","allTopics":["cosine-similarity","fuzzy-string-matching","ranking-algorithm"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-21T13:59:56.094Z"}},{"type":"Public","name":"pddi-cds-vscode-validation","owner":"dbmi-pitt","isFork":false,"description":"A project that validates PDDI CDS rules written in CQL using a VS Code environment","allTopics":[],"primaryLanguage":{"name":"Liquid","color":"#67b8de"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-12T19:49:32.725Z"}},{"type":"Public","name":"ACT-Network","owner":"dbmi-pitt","isFork":false,"description":"ACT - Accrual to Clinical Trials Network Repository","allTopics":["data-stewards","data-curators","system-administrators"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":4,"issueCount":41,"starsCount":3,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-12T05:29:26.903Z"}},{"type":"Public","name":"mBiasPrevention","owner":"dbmi-pitt","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-22T04:40:25.235Z"}},{"type":"Public","name":"faersdbstats","owner":"dbmi-pitt","isFork":true,"description":"Generate safety signal statistics from FDA FAERS data","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":7,"starsCount":5,"forksCount":30,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-02T08:45:37.599Z"}},{"type":"Public","name":"cqf-ruler","owner":"dbmi-pitt","isFork":true,"description":"CQL Measure Processing Component","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":49,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-14T22:42:25.479Z"}},{"type":"Public","name":"UMLS-Graph","owner":"dbmi-pitt","isFork":false,"description":"UMLS Graph database for semantic queries","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":3,"starsCount":18,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-11T15:08:11.874Z"}},{"type":"Public","name":"ddi-cds","owner":"dbmi-pitt","isFork":false,"description":"All drug-drug interaction CDS rules written in Drools from the AHRQ funded projects ","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":14,"issueCount":2,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-10T22:02:02.290Z"}},{"type":"Public","name":"path-redcap-to-cdm","owner":"dbmi-pitt","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TSQL","color":"#e38c00"},"pullRequestCount":1,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-26T19:43:51.661Z"}},{"type":"Public","name":"data_distillery","owner":"dbmi-pitt","isFork":false,"description":"Repo for the University of Pittsburgh/HuBMAP part of the CFDE Data Distillery. The repo is primarily to track issues or requests. ","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-15T21:05:44.512Z"}},{"type":"Public","name":"ocelot","owner":"dbmi-pitt","isFork":false,"description":"Ocelot - obtain census tract and Walk Score data (walk, bike, and transit scores) based on geocoordinates","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-22T18:27:14.209Z"}},{"type":"Public","name":"NotesFromElasticSearchIndex","owner":"dbmi-pitt","isFork":false,"description":"Jupyter notebook that extracts note text from an Elastic Search index","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-09T21:20:47.244Z"}},{"type":"Public","name":"RCTMethodologyIE","owner":"dbmi-pitt","isFork":true,"description":"Models to extract methodological characteristics from Randomized Controlled Trial","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-09T05:36:40.781Z"}},{"type":"Public","name":"COMRADEdb","owner":"dbmi-pitt","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-25T17:06:33.653Z"}},{"type":"Public","name":"OVBanalysis","owner":"dbmi-pitt","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-22T17:15:34.887Z"}},{"type":"Public","name":"bcrf-search-api","owner":"dbmi-pitt","isFork":true,"description":"BCRF search web service and associated pieces to create an index","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-15T15:25:04.842Z"}},{"type":"Public","name":"Geri-DL","owner":"dbmi-pitt","isFork":false,"description":"Deep learning for predicting clinical events in frail elderly","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-08T21:30:31.961Z"}},{"type":"Public","name":"Merged-PDDI","owner":"dbmi-pitt","isFork":false,"description":"Code to prototype the new Drug Interaction Knowledge Base","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":2,"issueCount":2,"starsCount":4,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-20T23:01:46.355Z"}},{"type":"Public","name":"bcrf-translation","owner":"dbmi-pitt","isFork":false,"description":"temporary bcrf-translation repo","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-02T13:55:37.280Z"}}],"repositoryCount":99,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}