{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"psm_utils","owner":"compomics","isFork":false,"description":"Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python","topicNames":["python","parsing","proteomics","mass-spectrometry","peptide-identification","peptide-spectrum-matches"],"topicsNotShown":0,"allTopics":["python","parsing","proteomics","mass-spectrometry","peptide-identification","peptide-spectrum-matches"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":8,"starsCount":20,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T15:37:28.906Z"}},{"type":"Public","name":"molexpress","owner":"compomics","isFork":false,"description":"Graph Neural Networks with Keras 3","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T18:59:37.451Z"}},{"type":"Public","name":"ThermoRawFileParser","owner":"compomics","isFork":false,"description":"Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C#","color":"#178600"},"pullRequestCount":0,"issueCount":15,"starsCount":169,"forksCount":47,"license":"Apache License 2.0","participation":[0,0,3,0,0,2,3,0,0,0,0,6,0,1,0,2,8,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,2,0,1,4,1,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-10T14:37:29.526Z"}},{"type":"Public","name":"ms2pip","owner":"compomics","isFork":false,"description":"MS2PIP: MS2 Peak Intensity Prediction","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":2,"issueCount":11,"starsCount":34,"forksCount":17,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-09T17:19:33.450Z"}},{"type":"Public","name":"searchgui","owner":"compomics","isFork":false,"description":"Highly adaptable common interface for proteomics search and de novo engines","topicNames":["proteomics","protein-identification","java","bioinformatics"],"topicsNotShown":0,"allTopics":["proteomics","protein-identification","java","bioinformatics"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":11,"starsCount":38,"forksCount":16,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-08T13:14:57.389Z"}},{"type":"Public","name":"ms2rescore","owner":"compomics","isFork":false,"description":"Modular and user-friendly platform for AI-assisted rescoring of peptide identifications","topicNames":["proteomics","percolator","peptide-identification","ms2pip","deeplc"],"topicsNotShown":0,"allTopics":["proteomics","percolator","peptide-identification","ms2pip","deeplc"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":17,"starsCount":38,"forksCount":15,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T12:11:49.505Z"}},{"type":"Public","name":"reporter","owner":"compomics","isFork":false,"description":"Protein quantification based on reporter ions","topicNames":["bioinformatics","proteomics","protein-quantification","reporter-ions"],"topicsNotShown":0,"allTopics":["bioinformatics","proteomics","protein-quantification","reporter-ions"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":6,"starsCount":4,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T12:02:17.196Z"}},{"type":"Public","name":"peptide-shaker","owner":"compomics","isFork":false,"description":"Interpretation of proteomics identification results","topicNames":["proteomics","protein-identification","java","bioinformatics"],"topicsNotShown":0,"allTopics":["proteomics","protein-identification","java","bioinformatics"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":32,"starsCount":46,"forksCount":19,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T11:57:51.572Z"}},{"type":"Public","name":"compomics-utilities","owner":"compomics","isFork":false,"description":"Open source Java library for computational proteomics","topicNames":["proteomics","computational-proteomics","bioinformatics"],"topicsNotShown":0,"allTopics":["proteomics","computational-proteomics","bioinformatics"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":4,"starsCount":28,"forksCount":16,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T11:54:42.370Z"}},{"type":"Public","name":"IM2Deep","owner":"compomics","isFork":false,"description":"Collisional cross-section prediction for modified peptides","topicNames":["proteomics","mass-spectrometry","peptides","ion-mobility","collisional-cross-section","timstof"],"topicsNotShown":0,"allTopics":["proteomics","mass-spectrometry","peptides","ion-mobility","collisional-cross-section","timstof"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T10:59:30.162Z"}},{"type":"Public","name":"DeepLC","owner":"compomics","isFork":false,"description":"DeepLC: Retention time prediction for (modified) peptides using Deep Learning.","topicNames":["proteomics","peptides","retention-time","peptide-modification","deep-learning"],"topicsNotShown":0,"allTopics":["proteomics","peptides","retention-time","peptide-modification","deep-learning"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":46,"forksCount":18,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-14T11:50:45.575Z"}},{"type":"Public","name":"bioconda-recipes","owner":"compomics","isFork":true,"description":"Conda recipes for the bioconda channel.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3061,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-12T15:43:16.816Z"}},{"type":"Public","name":"ms2rescore-rs","owner":"compomics","isFork":false,"description":"Rust functionality for the MS²Rescore package","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-08T14:53:03.331Z"}},{"type":"Public","name":"tabloidProteome","owner":"compomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":3,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T09:47:55.084Z"}},{"type":"Public","name":"denovogui","owner":"compomics","isFork":false,"description":"Graphical user interface for de novo sequencing of tandem mass spectra","topicNames":["proteomics","denovo","graphical-user-interface","de-novo-sequencing"],"topicsNotShown":0,"allTopics":["proteomics","denovo","graphical-user-interface","de-novo-sequencing"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":4,"starsCount":14,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-11T14:07:59.886Z"}},{"type":"Public","name":"lesSDRF","owner":"compomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-20T09:23:22.802Z"}},{"type":"Public","name":"Tissue_prediction_manuscript","owner":"compomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-20T12:52:11.541Z"}},{"type":"Public","name":"ThermoRawFileParserGUI","owner":"compomics","isFork":false,"description":"Graphical user interface for the ThermoRawFileParser","topicNames":["conversion","proteomics","raw","java"],"topicsNotShown":0,"allTopics":["conversion","proteomics","raw","java"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":18,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-12T18:15:23.829Z"}},{"type":"Public","name":"workshop-BioscienceSnapshot","owner":"compomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-09T10:47:39.160Z"}},{"type":"Public","name":"compomics.github.io","owner":"compomics","isFork":false,"description":"Compomics github website.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-21T20:10:37.517Z"}},{"type":"Public","name":"COSS","owner":"compomics","isFork":false,"description":"COSS: CompOmics Spectral Searching","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":4,"issueCount":5,"starsCount":8,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-18T12:29:45.531Z"}},{"type":"Public","name":"moff-gui","owner":"compomics","isFork":false,"description":"A graphical user interface for the Modest Feature Finding algorithm (moFF)","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-11T11:16:31.210Z"}},{"type":"Public","name":"CALLC","owner":"compomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-06T09:06:07.869Z"}},{"type":"Public","name":"jsparklines","owner":"compomics","isFork":false,"description":"Sparklines for java tables","topicNames":["visualization","sparkline"],"topicsNotShown":0,"allTopics":["visualization","sparkline"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":2,"starsCount":8,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-01T14:03:41.250Z"}},{"type":"Public","name":"cellmissy","owner":"compomics","isFork":false,"description":"Cell Migration Invasion Storage System.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":8,"issueCount":3,"starsCount":6,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-16T05:11:20.940Z"}},{"type":"Public","name":"colims","owner":"compomics","isFork":false,"description":"A lims system to automate and expedite proteomics data management, processing and analysis.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"APL","color":"#5A8164"},"pullRequestCount":8,"issueCount":0,"starsCount":4,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-10T05:39:13.145Z"}},{"type":"Public","name":"mitraq","owner":"compomics","isFork":false,"description":"Multiple iTRAQ/TMT Data Analysis ","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-08T19:47:10.582Z"}},{"type":"Public","name":"ms2rescore-immunopeptidomics-manuscript","owner":"compomics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-30T14:08:31.550Z"}},{"type":"Public","name":"pepshell","owner":"compomics","isFork":false,"description":"Visualization of conformational proteomics data.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":6,"issueCount":1,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-29T16:51:06.562Z"}},{"type":"Public","name":"fragmentation-analyzer","owner":"compomics","isFork":false,"description":"A standalone java tool for analyzing ms/ms fragmentation data.","topicNames":["bioinformatics","proteomics","fragmentation"],"topicsNotShown":0,"allTopics":["bioinformatics","proteomics","fragmentation"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":3,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-21T12:24:17.376Z"}}],"repositoryCount":91,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}