{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"jannovar","owner":"charite","isFork":false,"description":"Annotation of VCF variants with functional impact and from databases (executable+library)","allTopics":["bioinformatics","vcf","variant-annotation","variant-filtration"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":32,"starsCount":54,"forksCount":37,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T20:25:02.546Z"}},{"type":"Public","name":"asdpex","owner":"charite","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":4,"issueCount":1,"starsCount":7,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-02T22:21:43.085Z"}},{"type":"Public","name":"charite.github.io","owner":"charite","isFork":false,"description":"Charité Computational Biology Website","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":8,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-01-15T05:24:44.416Z"}},{"type":"Public","name":"hyperSMURF","owner":"charite","isFork":false,"description":"Weka implementation of hyperSMURF using EasyEnsemble and SMOTE","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-12-16T15:12:13.188Z"}},{"type":"Public","name":"topodombar","owner":"charite","isFork":false,"description":"Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":4,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-11-08T15:52:05.605Z"}},{"type":"Public","name":"Q","owner":"charite","isFork":false,"description":"Q ChIP-seq peak caller","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":1,"starsCount":17,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-05-19T20:00:54.928Z"}},{"type":"Public","name":"hyperSMURF-tutorial","owner":"charite","isFork":true,"description":"Tutorial how you can the hyperSMURF algorithm in your Java application","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-04-24T08:44:40.122Z"}},{"type":"Public","name":"weka-GWAVA","owner":"charite","isFork":false,"description":"Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-08-16T13:27:01.199Z"}},{"type":"Public","name":"chipseqknime","owner":"charite","isFork":false,"description":"KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-03-29T17:06:59.669Z"}},{"type":"Public archive","name":"jannovar_tutorial","owner":"charite","isFork":false,"description":"Jannovar Tutorial Applications","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":1,"issueCount":2,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-05-27T09:46:28.523Z"}},{"type":"Public archive","name":"jannovar_example_app","owner":"charite","isFork":false,"description":"Minimal Maven application using Jannovar","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-05-26T13:01:57.461Z"}},{"type":"Public","name":"denovocaller","owner":"charite","isFork":false,"description":"Denovo Variation Caller for simple familie trios (mother, father, affected child)","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-01-16T12:36:11.131Z"}},{"type":"Public","name":"ngspipeline","owner":"charite","isFork":false,"description":"Our NGS Pipeline using Nextflow","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2014-12-09T14:57:49.766Z"}}],"repositoryCount":13,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}