{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"NanoImagingPack","owner":"bionanoimaging","isFork":false,"description":"Python pack for nanoimaging-related tasks","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T16:39:50.522Z"}},{"type":"Public","name":"PSFToolbox-Matlab","owner":"bionanoimaging","isFork":false,"description":"Includes various ways to calculate point spread functions (PSFs) with a focus on high NA fluorescence microscopy. ","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T11:16:28.279Z"}},{"type":"Public","name":"SeparableFunctions.jl","owner":"bionanoimaging","isFork":false,"description":"Calculates multidimensional functions faster by exploiting their separability.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-01T13:42:40.570Z"}},{"type":"Public","name":"IndexFunArrays.jl","owner":"bionanoimaging","isFork":false,"description":"Fun with indices (and functions on them)","topicNames":["julia","array","julia-language"],"topicsNotShown":0,"allTopics":["julia","array","julia-language"],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":3,"starsCount":6,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-23T15:40:30.901Z"}},{"type":"Public","name":"FourierTools.jl","owner":"bionanoimaging","isFork":false,"description":"Tools for working with Fourier space.","topicNames":["interpolation","julia","fourier","arrays","fft","imageprocessing"],"topicsNotShown":0,"allTopics":["interpolation","julia","fourier","arrays","fft","imageprocessing"],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":3,"issueCount":4,"starsCount":51,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T13:47:37.238Z"}},{"type":"Public","name":"NDTools.jl","owner":"bionanoimaging","isFork":false,"description":"A lightweight package for utility functions for working with multi-dimensional data","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":3,"starsCount":4,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-31T11:43:56.876Z"}},{"type":"Public","name":"PSFDistiller.jl","owner":"bionanoimaging","isFork":false,"description":"Distills a point spread function (PSF) from a measurement of beads by selecting local maxima that are separate enough from other ones.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-24T07:31:16.351Z"}},{"type":"Public","name":"View5D","owner":"bionanoimaging","isFork":false,"description":"An image viewer for up to 5-dim data <a href=\"http://www.nanoimaging.de/View5D\" rel=\"nofollow\">www.nanoimaging.de/View5D</a>","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-16T18:29:19.953Z"}},{"type":"Public","name":"Scalable-Angular-Spectrum-Method-SAS","owner":"bionanoimaging","isFork":false,"description":"Implementations of the Scalable Angular Spectrum Method","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":1,"starsCount":34,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-14T10:48:19.660Z"}},{"type":"Public","name":"bionanoimaging.github.io","owner":"bionanoimaging","isFork":false,"description":"Repository for hosting the website files","topicNames":["physics","jena","microscopy","heintzmann"],"topicsNotShown":0,"allTopics":["physics","jena","microscopy","heintzmann"],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-07T15:39:03.000Z"}},{"type":"Public","name":"Image-Processing-In-Microscopy-2023-2024","owner":"bionanoimaging","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-18T11:39:36.103Z"}},{"type":"Public","name":"DiscoverEpidemicModel.jl","owner":"bionanoimaging","isFork":false,"description":"With this repo we provide a toolbox for automatic model discovery in epidemiology. We therefor start with Sars-CoV-2 modelling.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":10,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-14T12:15:45.213Z"}},{"type":"Public","name":"Khoros","owner":"bionanoimaging","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-14T19:22:27.366Z"}},{"type":"Public","name":"khorosBinLin64","owner":"bionanoimaging","isFork":false,"description":"binaries for the khoros-inspired c-helpers","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-14T18:52:58.462Z"}},{"type":"Public","name":"TiledViews.jl","owner":"bionanoimaging","isFork":false,"description":"Allows an AbstractArray, to look like an AbstractArray with one more dimension and the tiles are represented along this dimension.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":1,"starsCount":12,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-21T21:07:41.864Z"}},{"type":"Public","name":"cameracalibration","owner":"bionanoimaging","isFork":false,"description":"This is a Napari Plugin that calibrates your camera w.r.t. readnoise and gain","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-29T11:44:53.379Z"}},{"type":"Public","name":"matlab_tools","owner":"bionanoimaging","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-23T09:37:55.942Z"}},{"type":"Public","name":"Beamerscope-ANDROID","owner":"bionanoimaging","isFork":false,"description":"Beamerscope-ANDROID","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-30T11:06:42.257Z"}},{"type":"Public","name":"EM-guided_deconv","owner":"bionanoimaging","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-11T15:51:04.194Z"}},{"type":"Public","name":"JuliaConvolutionPerformance","owner":"bionanoimaging","isFork":false,"description":"Performance comparison of different convolution approaches","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-06T11:21:23.718Z"}},{"type":"Public","name":"ImageSharpness.jl","owner":"bionanoimaging","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-17T17:43:09.750Z"}},{"type":"Public","name":"Introduction_Image_Processing_Julia","owner":"bionanoimaging","isFork":false,"description":"Material for 6th NORMIC Image Processing Workshop","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-26T21:06:52.825Z"}},{"type":"Public","name":"ShiftedArrays.jl","owner":"bionanoimaging","isFork":true,"description":"Lazy shifted arrays for data analysis in Julia","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":10,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-04-10T08:44:40.363Z"}},{"type":"Public","name":"cellSTORM-ANDROID","owner":"bionanoimaging","isFork":false,"description":"Application to readout BW-frames from HUAWEI derived from Camera2RAW and FreedCAM","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-14T16:16:35.779Z"}},{"type":"Public","name":"Tensorflow_MultipleScattering","owner":"bionanoimaging","isFork":false,"description":"Repo to compare different single/multiple scattering algorithms computationally.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-20T12:56:43.748Z"}},{"type":"Public","name":"SmartLense","owner":"bionanoimaging","isFork":false,"description":"Android Application for controlling a LED-Matrix of a 3D-printed Microscope Framework.","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-08-12T13:12:54.017Z"}},{"type":"Public","name":"cellSTORM-Tensorflow","owner":"bionanoimaging","isFork":false,"description":"Image-to-Image network to localize dSTORM events in Tensorflow. Publication link: <a href=\"https://arxiv.org/abs/1804.06244\" rel=\"nofollow\">https://arxiv.org/abs/1804.06244</a>","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-12-15T18:19:14.184Z"}},{"type":"Public","name":"cellSTORM_TENSORFLOW","owner":"bionanoimaging","isFork":false,"description":"This is the APP to localize dSTORM experiments using an Android cellphone and an image-to-image GAN","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-12-15T18:18:35.407Z"}},{"type":"Public","name":"cellSTORM-MATLAB","owner":"bionanoimaging","isFork":false,"description":"Code to generate datasets for the cellSTORM approach","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-11-23T14:07:28.675Z"}},{"type":"Public","name":"JavaCall.jl","owner":"bionanoimaging","isFork":true,"description":"Call Java from Julia","topicNames":[],"topicsNotShown":0,"allTopics":[],"primaryLanguage":{"name":"Julia","color":"#a270ba"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":53,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-04T17:25:50.016Z"}}],"repositoryCount":36,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}