{"payload":{"pageCount":6,"repositories":[{"type":"Public","name":"dotty","owner":"bihealth","isFork":false,"description":"cdot-based transcript projections","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":2,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T18:14:47.663Z"}},{"type":"Public","name":"hpc-access","owner":"bihealth","isFork":false,"description":"Web interface for managing access and resource requests for the BIH cluster","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":10,"issueCount":15,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T14:34:02.050Z"}},{"type":"Public","name":"sodar-server","owner":"bihealth","isFork":false,"description":"SODAR: System for Omics Data Access and Retrieval","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":323,"starsCount":13,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T14:07:49.461Z"}},{"type":"Public","name":"reev-frontend-lib","owner":"bihealth","isFork":false,"description":"Re-useable components from REEV","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":9,"issueCount":2,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T13:28:53.595Z"}},{"type":"Public","name":"snappy-pipeline","owner":"bihealth","isFork":false,"description":"SNAPPY Nucleic Acid Processing in Python","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":11,"issueCount":99,"starsCount":8,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T11:49:57.436Z"}},{"type":"Public","name":"seasnap-pipeline","owner":"bihealth","isFork":false,"description":"SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":22,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T10:59:26.432Z"}},{"type":"Public","name":"reev","owner":"bihealth","isFork":false,"description":"REEV: Explanation and Evaluation of Variants","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":4,"issueCount":37,"starsCount":5,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T10:55:36.197Z"}},{"type":"Public","name":"auto-acmg","owner":"bihealth","isFork":false,"description":"A tool for automatic classification of sequence variants according to ACMG criteria.","allTopics":["algorithm","variant-analysis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":25,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T18:22:22.060Z"}},{"type":"Public","name":"reev-docker-compose","owner":"bihealth","isFork":false,"description":"REEV Docker Compose","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T12:55:03.286Z"}},{"type":"Public","name":"kiosc-server","owner":"bihealth","isFork":false,"description":"","allTopics":["docker","django"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":29,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T14:06:19.069Z"}},{"type":"Public","name":"nf-core-configs","owner":"bihealth","isFork":true,"description":"Config files used to define parameters specific to compute environments at different Institutions","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":259,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T08:39:34.398Z"}},{"type":"Public","name":"bih-cluster","owner":"bihealth","isFork":false,"description":"BIH Cluster Wiki","allTopics":[],"primaryLanguage":{"name":"Awk","color":"#c30e9b"},"pullRequestCount":1,"issueCount":7,"starsCount":13,"forksCount":36,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T16:26:53.794Z"}},{"type":"Public","name":"Wei_et_al_2024","owner":"bihealth","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T09:58:40.213Z"}},{"type":"Public","name":"keycloak-theme-bihealth","owner":"bihealth","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T13:12:23.516Z"}},{"type":"Public","name":"sodar-core","owner":"bihealth","isFork":false,"description":"SODAR Core: A Django-based framework for building scientific data management web apps","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":253,"starsCount":8,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-06T13:43:48.019Z"}},{"type":"Public","name":"StemCNV-check","owner":"bihealth","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T13:49:12.800Z"}},{"type":"Public","name":"cubi-tk","owner":"bihealth","isFork":false,"description":"CUBI Tooling for SODAR, VarFish et al.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":37,"starsCount":4,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-30T09:41:53.560Z"}},{"type":"Public","name":"ngs-chew","owner":"bihealth","isFork":false,"description":"Tasty, tasty, NGS!","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":14,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-29T14:00:34.798Z"}},{"type":"Public","name":"altamisa","owner":"bihealth","isFork":false,"description":"AltamISA: a Python API for ISA-Tab files","allTopics":["bioinformatics","isa-tab","isa"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":21,"starsCount":5,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-29T12:01:32.164Z"}},{"type":"Public","name":"ood-bih-rstudio-server","owner":"bihealth","isFork":false,"description":"Open OnDemand App: RStudio Server","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-24T15:51:21.196Z"}},{"type":"Public","name":"panelapp-pydantic","owner":"bihealth","isFork":false,"description":"Pydanic models for GenomicsEngland PanelApp API","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-01T13:39:40.219Z"}},{"type":"Public","name":"manuscript-Microenvironmental-acidification","owner":"bihealth","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-26T21:51:24.245Z"}},{"type":"Public","name":"ood-bih-jupyter","owner":"bihealth","isFork":false,"description":"Open OnDemand App: Jupyter","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-26T16:59:52.535Z"}},{"type":"Public","name":"cubi-literature","owner":"bihealth","isFork":false,"description":"CUBI publications","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-25T06:55:14.440Z"}},{"type":"Public","name":"clinvar-tsv","owner":"bihealth","isFork":false,"description":"Pipeline for converting ClinVar XML files to easy-to-use TSV files","allTopics":["bioinformatics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":3,"starsCount":6,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T17:49:54.855Z"}},{"type":"Public","name":"biomedsheets","owner":"bihealth","isFork":false,"description":"📚 JSON/TSV sample sheets for biomedical experiments","allTopics":["bioinformatics","data-management"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":3,"starsCount":3,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T17:16:34.753Z"}},{"type":"Public","name":"vcfpy","owner":"bihealth","isFork":false,"description":"Python 3 library with good support for both reading and writing VCF","allTopics":["bioinformatics","parsing","writing","vcf","file-format"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":9,"starsCount":87,"forksCount":18,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T16:59:28.176Z"}},{"type":"Public","name":"scelvis","owner":"bihealth","isFork":false,"description":"🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":5,"starsCount":21,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T15:30:06.848Z"}},{"type":"Public","name":"excovis","owner":"bihealth","isFork":false,"description":"Exome Coverage Visualization","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T15:30:04.025Z"}},{"type":"Public","name":"RCrashCourse2023","owner":"bihealth","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-15T17:38:30.785Z"}}],"repositoryCount":168,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}