{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"el_gato","owner":"appliedbinf","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":5,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-05T16:09:45.486Z"}},{"type":"Public","name":"pima-docker2","owner":"appliedbinf","isFork":false,"description":"Volume based Pima Docker","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-23T15:52:14.037Z"}},{"type":"Public","name":"pima-docker","owner":"appliedbinf","isFork":false,"description":"Seperating the Docker Installation and codebase from the core pima codebase. This way the latest version is always created with the latest docker","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-13T17:10:52.091Z"}},{"type":"Public","name":"pima","owner":"appliedbinf","isFork":false,"description":"Plasmid and antimicrobial resistance pipeline","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":2,"starsCount":16,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-13T20:51:45.184Z"}},{"type":"Public","name":"c19r-app","owner":"appliedbinf","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-08T14:49:09.698Z"}},{"type":"Public","name":"c19rdata","owner":"appliedbinf","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-17T20:02:44.097Z"}},{"type":"Public","name":"hope","owner":"appliedbinf","isFork":false,"description":"Assessment of homopolymer performance of ONT sequencing","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-06T20:13:57.355Z"}},{"type":"Public","name":"pima_md","owner":"appliedbinf","isFork":false,"description":"This implementation of PIMA uses Markdown instead of tectonic. Operation is largely the same though the packages used slightly different.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-28T19:20:09.416Z"}},{"type":"Public","name":"covid19-event-risk-planner","owner":"appliedbinf","isFork":false,"description":"COVID19 risk planner R-Shiny application","allTopics":["bioinformatics","shiny","modeling","rstats","shiny-apps","shiny-r","covid-19","covid19","daily-data"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":47,"forksCount":23,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-06T21:01:45.842Z"}},{"type":"Public","name":"mycetomatis_analysis_workflow","owner":"appliedbinf","isFork":false,"description":"Collection of scripts describing how Mycetomatis datasets were processed","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-27T02:31:47.271Z"}},{"type":"Public","name":"2021-QBiosWorkshop","owner":"appliedbinf","isFork":false,"description":"R shiny examples for QBios Workshop May 2021","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-18T14:20:31.676Z"}},{"type":"Public","name":"URDO-CANDy","owner":"appliedbinf","isFork":false,"description":"CANDy, the Custom AmplicoN Database tool, allows users to create custom BLAST databases using amplicons created with in silico PCR","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":0,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-06T20:07:52.066Z"}},{"type":"Public","name":"GaTech-Weitz-SheildImmunity-FrontEnd","owner":"appliedbinf","isFork":false,"description":"Bootstrap frontend for shieldimmunity.org","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-10T22:27:41.146Z"}},{"type":"Public","name":"GaTech-Weitz-ShieldImmunity","owner":"appliedbinf","isFork":false,"description":"Weitz Sheild Immunity dashboard components","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-10T22:10:39.648Z"}},{"type":"Public","name":"CovidOnCampus-API-Bridge","owner":"appliedbinf","isFork":false,"description":"Serverless API bridge","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-12T01:16:06.345Z"}},{"type":"Public","name":"covid_shield_immunity","owner":"appliedbinf","isFork":true,"description":"Modeling the Role of ‘Shield Immunity’ in Reducing COVID-19 Epidemic Spread","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":7,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-05T15:43:08.480Z"}},{"type":"Public","name":"MAGEmodel_covid19_GA","owner":"appliedbinf","isFork":true,"description":"Metapopulation AGe-structured Epidemiological (MAGE) model for COVID-19 in Georgia","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-29T15:49:33.844Z"}},{"type":"Public","name":"URDO-SMOREd","owner":"appliedbinf","isFork":false,"description":"Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.","allTopics":["bioinformatics","genomics","ngs","public-health","microbial-genomics","bacteria","taxonomy-assignment","ngs-analysis","pathogen-detection"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-24T15:00:46.623Z"}},{"type":"Public","name":"constructor","owner":"appliedbinf","isFork":true,"description":"tool for creating installers from conda packages","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":165,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-05T16:44:26.834Z"}},{"type":"Public","name":"genecaller","owner":"appliedbinf","isFork":false,"description":"A stringMLST-based approach to gene calling and annotation","allTopics":["bioinformatics","annotation","applied-bioinformatics-lab"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-03-29T19:37:10.012Z"}}],"repositoryCount":20,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}