{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"ApsimX","owner":"PlantandFoodResearch","isFork":true,"description":"ApsimX is the next generation of APSIM","allTopics":[],"primaryLanguage":{"name":"C#","color":"#178600"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":159,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T23:54:42.192Z"}},{"type":"Public","name":"machine-vision-acquisition","owner":"PlantandFoodResearch","isFork":false,"description":"A playpen for generic machine vision acquisition workflows","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":6,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-29T04:57:56.008Z"}},{"type":"Public","name":"MCHap","owner":"PlantandFoodResearch","isFork":false,"description":"Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.","allTopics":["numpy","array","haplotypes","bayesian-inference","dna-sequences","genotyping","polyploidy","haplotype-assembly","haplotype-blocks","polyploid-genotyping"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":26,"starsCount":18,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-04T21:11:28.061Z"}},{"type":"Public","name":"SVS","owner":"PlantandFoodResearch","isFork":false,"description":"SVS tool development","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T03:34:31.487Z"}},{"type":"Public","name":"LoggerPrograms","owner":"PlantandFoodResearch","isFork":false,"description":"This repository contains programs written for controlling data loggers","allTopics":[],"primaryLanguage":{"name":"Visual Basic .NET","color":"#945db7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-21T01:54:39.545Z"}},{"type":"Public","name":"20-by-2020","owner":"PlantandFoodResearch","isFork":false,"description":"Data analysis for a collaborative project with FAR aiming to improve wheat yields","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-29T04:36:55.094Z"}},{"type":"Public","name":"hidecan","owner":"PlantandFoodResearch","isFork":false,"description":"Package to create hidecan plots for GWAS and differential expression results","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-29T23:59:30.052Z"}},{"type":"Public","name":"aspire-lite","owner":"PlantandFoodResearch","isFork":false,"description":"Aspire Asparagus Android app written by Alastair Hughes","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-07T22:38:59.617Z"}},{"type":"Public","name":"KateLindyMaryamTestRepo","owner":"PlantandFoodResearch","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-02T19:53:31.784Z"}},{"type":"Public","name":"Xcm_detection_using_Minion_Sequencing","owner":"PlantandFoodResearch","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-24T02:14:49.066Z"}},{"type":"Public","name":"Tuber_bruising","owner":"PlantandFoodResearch","isFork":false,"description":"Scripts for analysis of genetic components of tuber bruising","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-14T04:59:41.166Z"}},{"type":"Public","name":"sandpit","owner":"PlantandFoodResearch","isFork":false,"description":"A demonstration repository","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":8,"issueCount":0,"starsCount":1,"forksCount":32,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-14T01:44:51.087Z"}},{"type":"Public","name":"github-automation","owner":"PlantandFoodResearch","isFork":false,"description":"Scripts and tools to automate github","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-25T16:41:10.948Z"}},{"type":"Public","name":"pyeagleio","owner":"PlantandFoodResearch","isFork":false,"description":"Python library to interact with <a href=\"https://eagle.io/\" rel=\"nofollow\">https://eagle.io/</a>","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-22T07:07:08.257Z"}},{"type":"Public","name":"pytomicropy","owner":"PlantandFoodResearch","isFork":false,"description":"Python to Micropython converter","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-07T22:45:59.379Z"}},{"type":"Public","name":"pyserialdrivers","owner":"PlantandFoodResearch","isFork":false,"description":"A collection of OOB serial drivers for interacting with predominantly environmental sensors","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-09-16T21:50:52.896Z"}},{"type":"Public","name":"ONT_CRISPR-Cas9_enrichment","owner":"PlantandFoodResearch","isFork":false,"description":"Public Repository for publication workflows","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-09-05T22:48:12.445Z"}},{"type":"Public","name":"Example-Tetraploid-Potato-VCF-PRJNA414303","owner":"PlantandFoodResearch","isFork":false,"description":"Example tetraploid VCF from NCBI BioProject PRJNA414303","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-29T00:55:00.362Z"}},{"type":"Public","name":"TEFingerprint","owner":"PlantandFoodResearch","isFork":false,"description":"A Python3 library for transposon fingerprinting","allTopics":["bioinformatics","clustering","transposons","density-based-clustering","repeated-elements"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":10,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-26T00:02:43.206Z"}},{"type":"Public","name":"nextflow-demo","owner":"PlantandFoodResearch","isFork":true,"description":"Various examples of using NextFlow in the PFR Environment","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":108,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-21T03:02:55.868Z"}},{"type":"Public","name":"assemblathon2-analysis","owner":"PlantandFoodResearch","isFork":true,"description":"collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":21,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-29T02:01:07.616Z"}},{"type":"Public","name":"eFP-Browser","owner":"PlantandFoodResearch","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-02T23:06:47.211Z"}},{"type":"Public","name":"docker-ckan","owner":"PlantandFoodResearch","isFork":true,"description":"Docker Compose setup for CKAN","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":88,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-04T02:50:32.295Z"}},{"type":"Public","name":"PFR_Spinnaker_Ros_Node","owner":"PlantandFoodResearch","isFork":true,"description":"Point Grey (FLIR) Spinnaker based camera driver (Blackfly S etc.)","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":90,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-27T08:09:33.081Z"}},{"type":"Public","name":"QuickTestMassBalanceCalculator","owner":"PlantandFoodResearch","isFork":false,"description":"Quick test mass balance calculator. This is a shiny implementation of QTMB as developed in N messure it mange it SFF project.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-15T04:13:22.023Z"}},{"type":"Public archive","name":"APSIM_Docker","owner":"PlantandFoodResearch","isFork":false,"description":"Dockerfile and helper files to build Apsim Classic in a Docker container","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-14T00:33:20.263Z"}},{"type":"Public","name":"ckanext-pfr","owner":"PlantandFoodResearch","isFork":false,"description":"Configuration and settings associated with PFR's CKAN instance","allTopics":["ckan","ckanext"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-13T21:44:23.116Z"}},{"type":"Public","name":"APSIM.Shared","owner":"PlantandFoodResearch","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"C#","color":"#178600"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":39,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-08T04:03:09.525Z"}},{"type":"Public","name":"radar-twist","owner":"PlantandFoodResearch","isFork":false,"description":"Repository for translating arduino interpreted radar speeds into ROS twist with covariance","allTopics":[],"primaryLanguage":{"name":"CMake","color":"#DA3434"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-19T01:19:50.868Z"}},{"type":"Public","name":"ublox_gps_node","owner":"PlantandFoodResearch","isFork":true,"description":"A driver for ublox gps","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":369,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-19T01:18:56.632Z"}}],"repositoryCount":73,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}