{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"methylkey","owner":"IARCbioinfo","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T13:18:27.296Z"}},{"type":"Public","name":"gama_annot-nf","owner":"IARCbioinfo","isFork":false,"description":"Annotate VCF files with Annovar","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-25T14:27:05.624Z"}},{"type":"Public","name":"DPclust-nf","owner":"IARCbioinfo","isFork":false,"description":"Nextflow workflow to run DPclust on a series of samples","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-10T08:27:52.281Z"}},{"type":"Public","name":"SpatialPCAForWSIs","owner":"IARCbioinfo","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-23T11:13:35.079Z"}},{"type":"Public","name":"MESOMICS_data","owner":"IARCbioinfo","isFork":false,"description":"Data and scripts associated with MESOMICS paper and data note","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-06T07:21:49.453Z"}},{"type":"Public","name":"wsearch-nf","owner":"IARCbioinfo","isFork":false,"description":"Microbiome analysis with usearch, vsearch and phyloseq","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-03T13:15:03.120Z"}},{"type":"Public","name":"RF-mut-f","owner":"IARCbioinfo","isFork":false,"description":"A random forest implementation to filter germline mutations of tumor-only samples","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-07T21:49:11.995Z"}},{"type":"Public","name":"needlestack","owner":"IARCbioinfo","isFork":false,"description":"Multi-sample somatic variant caller","allTopics":["ngs","somatic-mutations","docker","bam-files","pipeline","nextflow","regression","variants","samtools","negative-binomial-regression"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":11,"starsCount":47,"forksCount":14,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-27T07:35:51.586Z"}},{"type":"Public","name":"Methylation_analysis_scripts","owner":"IARCbioinfo","isFork":false,"description":"R scripts for Illumina array analyses","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":2,"starsCount":1,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-26T10:30:56.747Z"}},{"type":"Public","name":"ITH_pipeline","owner":"IARCbioinfo","isFork":false,"description":"Pipeline to study intra tumor heterogeneity using HATCHet, DeCiFer and ClonEvol","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-21T14:16:14.110Z"}},{"type":"Public","name":"EPIDRIVER2020","owner":"IARCbioinfo","isFork":false,"description":"Scripts writen for EPIDERIVER project","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-31T08:52:37.045Z"}},{"type":"Public","name":"integration_analysis_scripts","owner":"IARCbioinfo","isFork":false,"description":"Scripts for multi-omics integration","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":6,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-03T09:03:37.136Z"}},{"type":"Public","name":"target-seq","owner":"IARCbioinfo","isFork":false,"description":"workflow description to call mutation with needlestack on targeted sequencing data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-08-06T11:53:48.382Z"}},{"type":"Public","name":"bamsurgeon-nf","owner":"IARCbioinfo","isFork":false,"description":"bamsurgeon with step of variant simulation encapsulated with nextflow","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-03-01T13:13:35.816Z"}},{"type":"Public","name":"RNAseq_analysis_scripts","owner":"IARCbioinfo","isFork":false,"description":"Scripts for RNA seq analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":7,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-10-31T15:07:53.202Z"}},{"type":"Public","name":"VCF-tricks","owner":"IARCbioinfo","isFork":false,"description":"Tip and tricks for VCF files","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":20,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-26T13:09:00.788Z"}},{"type":"Public","name":"ITH-nf","owner":"IARCbioinfo","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-13T15:27:14.721Z"}},{"type":"Public","name":"marathon-wgs","owner":"IARCbioinfo","isFork":false,"description":"A pipeline to study intratumor heterogeneity (ITH) with Canopy","allTopics":["marathon","falcon","variant-calling","canopy","intratumor-heterogeneity","copy-numbers"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-15T09:25:15.425Z"}},{"type":"Public","name":"SBG-CGC_course2018","owner":"IARCbioinfo","isFork":false,"description":"IARC course on analyzing TCGA data in the SevenBridges Genomics CancerGenomicsCloud (SBG-CGC)","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":7,"starsCount":6,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-04-06T13:41:19.199Z"}},{"type":"Public","name":"Gviz_multiAlignments","owner":"IARCbioinfo","isFork":false,"description":"R script for multiple BAM alignments viewing using Gviz (bioconductor package)","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":6,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-08-21T08:38:47.377Z"}},{"type":"Public","name":"CODEX-nf","owner":"IARCbioinfo","isFork":false,"description":"Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX","allTopics":["nextflow","ngs","copy-number-variation","whole-exome-sequencing","bam-files","pipeline"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":2,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-07-27T11:38:10.795Z"}},{"type":"Public","name":"TCGA_germline-nf","owner":"IARCbioinfo","isFork":false,"description":"annotation of germline variants from TCGA data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-05-03T07:54:17.623Z"}}],"repositoryCount":22,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}