{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"gavi_vimc_cholera","owner":"HopkinsIDD","isFork":false,"description":"VIMC cholera model - estimating impact of oral cholera vaccine","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":2,"issueCount":26,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T15:20:34.337Z"}},{"type":"Public","name":"rsv-forecast-hub","owner":"HopkinsIDD","isFork":false,"description":"RSV Scenario Modeling Hub for forecasting","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":7,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T14:28:35.214Z"}},{"type":"Public","name":"flepiMoP","owner":"HopkinsIDD","isFork":false,"description":"The Flexible Epidemic Modeling Pipeline","allTopics":["influenza","dynamical-modeling","compartmental-models","infectious-disease-models","covid-19"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":5,"issueCount":89,"starsCount":6,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T15:20:58.187Z"}},{"type":"Public","name":"RubellaR0","owner":"HopkinsIDD","isFork":false,"description":"Estimating the R0 for rubella from global serological data","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T14:58:45.140Z"}},{"type":"Public","name":"rsv-forecast-hub_website","owner":"HopkinsIDD","isFork":false,"description":"RSV Forcast Hub website repo","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T19:31:38.676Z"}},{"type":"Public","name":"Uvira_vaccination_validation_2023","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T14:06:57.275Z"}},{"type":"Public","name":"grande-saline-cholera-serosurvey","owner":"HopkinsIDD","isFork":false,"description":"Public Repository for Reanalysis of Cholera Serosurvey from Grand Saline Haiti","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-04T12:58:23.724Z"}},{"type":"Public","name":"flepiMoP_site","owner":"HopkinsIDD","isFork":true,"description":"Website for the Flexible Epidemic Modeling Pipeline","allTopics":["influenza","dynamical-modeling","compartmental-models","infectious-disease-models","covid-19"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":24768,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T17:03:16.872Z"}},{"type":"Public","name":"cholera-mapping-pipeline","owner":"HopkinsIDD","isFork":false,"description":"Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":10,"issueCount":122,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-01T21:33:17.533Z"}},{"type":"Public","name":"flepimop_sample","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-23T15:12:49.137Z"}},{"type":"Public","name":"flepimop-documentation","owner":"HopkinsIDD","isFork":false,"description":"Documentation for JHU-IDD's Flexible Epidemic Modeling Pipeline. Updated through gitbook.com. Browse it on https://iddynamics.gitbook.io/flepimop/","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-22T21:04:21.595Z"}},{"type":"Public","name":"flepiMoP_dockerbuild","owner":"HopkinsIDD","isFork":false,"description":"Repository containing R environment and other files needed to build a docker image for deploying flepiMoP.","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T18:22:29.802Z"}},{"type":"Public","name":"nepal_hev","owner":"HopkinsIDD","isFork":false,"description":"Public code used to map the predicted seroprevalence of hepatitis E virus across Nepal in 2021.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-11T17:48:38.817Z"}},{"type":"Public","name":"illumina-vc","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-10T04:57:58.493Z"}},{"type":"Public","name":"CholeraGenomics-AfricaSE","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-10T03:01:44.225Z"}},{"type":"Public","name":"cholera-burden-change-africa","owner":"HopkinsIDD","isFork":false,"description":"Public repository linked to manuscript on changes in the burden of suspected cholera from 2011-2020 in Africa","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T13:45:14.995Z"}},{"type":"Public","name":"uvira_onedose_ocv_ve","owner":"HopkinsIDD","isFork":false,"description":"One Dose Case-Control Study to Estimate kOCV VE in Uvira, DRC","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-19T08:50:10.862Z"}},{"type":"Public","name":"cholera_burden_cascade","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-13T19:49:00.469Z"}},{"type":"Public","name":"cholera_waves_ssd","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-11T16:45:53.170Z"}},{"type":"Public","name":"uvira_ocv_coverage_surveys","owner":"HopkinsIDD","isFork":false,"description":"Challenges with Achieving and Maintaining High Oral Cholera Vaccine Coverage in Uvira, Democratic Republic of Congo: serial cross-sectional representative surveys","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-08T11:26:56.741Z"}},{"type":"Public","name":"globaltoolboxlite","owner":"HopkinsIDD","isFork":false,"description":"A lite version of the globaltoolbox package for easy use","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-02T08:57:28.481Z"}},{"type":"Public","name":"sitakunda-hev","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-28T11:06:01.807Z"}},{"type":"Public","name":"IDSpatialStats","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":1,"starsCount":6,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-08T14:48:46.885Z"}},{"type":"Public","name":"cholera_positivity","owner":"HopkinsIDD","isFork":false,"description":"Code and Data for Cholera Positivity Review","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-14T16:11:04.464Z"}},{"type":"Public","name":"phylosamp","owner":"HopkinsIDD","isFork":false,"description":"The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.","allTopics":["package","r","phylogenetics","sampling"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":12,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-23T22:05:07.818Z"}},{"type":"Public","name":"covid_deaths_and_data","owner":"HopkinsIDD","isFork":false,"description":"Repo for a project focused on outliers in reported data and their impact on our understanding of COVID-19 and ability to model it.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-16T07:48:31.259Z"}},{"type":"Public","name":"COVIDScenarioPipeline","owner":"HopkinsIDD","isFork":false,"description":"Public shared code for doing scenario forecasting and creating reports for various governmental entities. ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":9,"issueCount":48,"starsCount":104,"forksCount":47,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-14T15:15:10.992Z"}},{"type":"Public","name":"VOCsamplesize","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-19T15:17:52.553Z"}},{"type":"Public","name":"minion-vc","owner":"HopkinsIDD","isFork":false,"description":"Bioinformatics pipeline for Oxford Nanopore sequencing of Vibrio cholerae","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-10T21:44:51.949Z"}},{"type":"Public","name":"cholera-multiplex-panel","owner":"HopkinsIDD","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-08T14:04:30.108Z"}}],"repositoryCount":91,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}