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Integrate imageMarshal #14

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joshmoore opened this issue Jul 10, 2020 · 1 comment

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OME Zarr Masks (Summer 2020)

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joshmoore commented Jul 10, 2020

see: https://github.com/IDR/SubmissionWorkflow/pull/7#discussion_r450783384

Rather than curl'ing from OMERO.web (see https://github.com/IDR/SubmissionWorkflow/pull/7), omero-cli-zarr should be able to generate the JSON for imageMarshal directly in Python code.

joshmoore assigned will-moore

joshmoore added this to TBD in OME Zarr Masks (Summer 2020) via automation

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sbesson commented Oct 12, 2021

For individual images #76 should take care of the OMERO rendering metadata transformation both with/without the --bf flag.

For plates, the logic should be in place when using the OMERO API and there is an RFE for implementing --bf support (#85).

Except in the latter case, I think the requirement to curl the imageMarshal URL is now dropped.

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