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In brief, the fiji-omero plugin reports an error (loci.formats.FormatException: Invalid image ID) when opening an image from our institute's omero. this issue was observed by some users but not by all.
Attaching jdb to a running Fiji process, I narrowed it down to the following:
Stopping in bioformats' loci.plugins.in.Importer.parseOptions(), line 127
So somewhere in between, everything after the "]" in my password must have been stripped away,
including the Image ID, causing the exception in the Fiji plugin.
I hope this can be fixed.
Something else that strikes me is that passwords seem to be passed as plain text, but is this really necessary?
Shouldn't the image id be all that is needed to query the image and send it to Fiji?
But maybe there are other use cases where this information is actually needed.
The text was updated successfully, but these errors were encountered:
Thank you very much @CFGrote . I'm surprised that this is handed down to and fails at the Bioformats level, as all the authentication and transfer is done on the OMERO level.
Bioformats version 7.0.1
This bug report is related to ImageSc post https://forum.image.sc/t/omero-fiji-plugin-error-invalid-image-id/89470/11.
In brief, the fiji-omero plugin reports an error (loci.formats.FormatException: Invalid image ID) when opening an image from our institute's omero. this issue was observed by some users but not by all.
Attaching jdb to a running Fiji process, I narrowed it down to the following:
Stopping in bioformats'
loci.plugins.in.Importer.parseOptions()
, line 127Note the password: It has a "]", likely closing the opening "[" after "open=".
Then, in line 132:
So somewhere in between, everything after the "]" in my password must have been stripped away,
including the Image ID, causing the exception in the Fiji plugin.
I hope this can be fixed.
Something else that strikes me is that passwords seem to be passed as plain text, but is this really necessary?
Shouldn't the image id be all that is needed to query the image and send it to Fiji?
But maybe there are other use cases where this information is actually needed.
The text was updated successfully, but these errors were encountered: