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Multiple multiscales #44

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will-moore opened this issue Nov 7, 2022 · 6 comments
Open

Multiple multiscales #44

will-moore opened this issue Nov 7, 2022 · 6 comments

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@will-moore
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will-moore commented Nov 7, 2022 •
edited

I don't know if this is an issue with ZarrReader or elsewhere, but just need somewhere to document this strange behaviour.

To test the support for various NGFF viewers for "multiple multiscales", I created a sample at https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0050A/4995115.zarr:

  • omero zarr export 4995115 -> 4995115.zarr
  • omero zarr export 4995097 -> 4995097.zarr
  • Copied each dataset from e.g. 4995097.zarr/0 -> 4995115.zarr/multiscales2_0
  • Copied multiscales metadata from 4995097.zarr/.zattrs into 4995115.zarr/.zattrs to add a second multiscales to the list.

When imported into OMERO, we get 2 images and the 2nd looks OK. But the first one seems to show the same planes for every Z-index and the 3 channels show mostly the same thing, but not exactly the same!

Screenshot 2022-11-07 at 18 43 49

Viewing the same NGFF in vizarr looks fine (although the 2nd multiscales image is ignored): https://hms-dbmi.github.io/vizarr/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0050A/4995115.zarr

If I remove the 2nd multiscales item from the list in 4995115.zarr/.zattrs and re-import, the image imports as expected (and the 'orphaned' .zarrays get imported as separate images...

Screenshot 2022-11-07 at 19 23 18

import log 

2022-11-07 19:26:21,964 248        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.5.12
2022-11-07 19:26:21,980 264        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 6.10.0 revision: f8b46c2458c43cffdf5bc67cc4bf9dfc6e93167b date: 31 May 2022
2022-11-07 19:26:22,032 316        [      main] INFO   formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
2022-11-07 19:26:22,332 616        [      main] INFO      ome.formats.importer.ImportCandidates - Depth: 20 Metadata Level: MINIMUM
2022-11-07 19:26:23,281 1565       [      main] INFO      ome.formats.importer.ImportCandidates - 209 file(s) parsed into 1 group(s) with 1 call(s) to setId in 643ms. (949ms total) [0 unknowns]
2022-11-07 19:26:23,322 1606       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to merge-ci-devspace.openmicroscopy.org:4064
2022-11-07 19:26:23,701 1985       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
2022-11-07 19:26:23,950 2234       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
2022-11-07 19:26:23,961 2245       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
2022-11-07 19:26:23,961 2245       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Client: 5.5.12
2022-11-07 19:26:23,961 2245       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.9.1-internal
2022-11-07 19:26:23,961 2245       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Name: Linux
2022-11-07 19:26:23,961 2245       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
2022-11-07 19:26:23,961 2245       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Version: 3.10.0-1160.45.1.el7.x86_64
2022-11-07 19:26:24,324 2608       [      main] INFO          ome.formats.importer.ImportConfig - Using import target: Dataset:62870
2022-11-07 19:26:24,347 2631       [2-thread-1] INFO         ome.formats.importer.ImportLibrary - Import target specifies container: Dataset:62870
2022-11-07 19:26:24,350 2634       [2-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_PREPARATION
2022-11-07 19:26:42,550 20834      [2-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_START
2022-11-07 19:26:42,562 20846      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/2/0/0...
2022-11-07 19:26:42,589 20873      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/2/0/0
2022-11-07 19:26:42,625 20909      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/2/0/0
2022-11-07 19:26:42,638 20922      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/.zarray...
2022-11-07 19:26:42,658 20942      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/.zarray
2022-11-07 19:26:42,685 20969      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/.zarray
2022-11-07 19:26:42,698 20982      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/1/0/0...
2022-11-07 19:26:42,716 21000      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/1/0/0
2022-11-07 19:26:42,746 21030      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/1/0/0
2022-11-07 19:26:42,759 21043      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/0/0/0...
2022-11-07 19:26:42,777 21061      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/0/0/0
2022-11-07 19:26:42,806 21090      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/0/0/0
2022-11-07 19:26:42,816 21100      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/3/.zarray...
2022-11-07 19:26:42,834 21118      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/3/.zarray
2022-11-07 19:26:42,860 21144      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/3/.zarray

.....

2022-11-07 19:26:52,734 31018      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/11/0/0
2022-11-07 19:26:52,745 31029      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/5/0/0...
2022-11-07 19:26:52,772 31056      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/5/0/0
2022-11-07 19:26:52,817 31101      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/5/0/0
2022-11-07 19:26:52,828 31112      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/2/0/0...
2022-11-07 19:26:52,844 31128      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/2/0/0
2022-11-07 19:26:53,008 31292      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/2/0/0
2022-11-07 19:26:53,022 31306      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/4/0/0...
2022-11-07 19:26:53,043 31327      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/4/0/0
2022-11-07 19:26:53,090 31374      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/4/0/0
2022-11-07 19:26:53,101 31385      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/1/0/0...
2022-11-07 19:26:53,119 31403      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/1/0/0
2022-11-07 19:26:53,159 31443      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/1/0/0
2022-11-07 19:26:53,171 31455      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/0/0/0...
2022-11-07 19:26:53,189 31473      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/0/0/0
2022-11-07 19:26:53,227 31511      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/0/0/0
2022-11-07 19:26:53,239 31523      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/9/0/0...
2022-11-07 19:26:53,256 31540      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/9/0/0
2022-11-07 19:26:53,295 31579      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/9/0/0
2022-11-07 19:26:53,307 31591      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/10/0/0...
2022-11-07 19:26:53,325 31609      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/10/0/0
2022-11-07 19:26:53,361 31645      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/10/0/0
2022-11-07 19:26:53,373 31657      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/8/0/0...
2022-11-07 19:26:53,405 31689      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/8/0/0
2022-11-07 19:26:53,449 31733      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/1/0/8/0/0
2022-11-07 19:26:53,462 31746      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/.zarray...
2022-11-07 19:26:53,481 31765      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/.zarray
2022-11-07 19:26:53,503 31787      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/.zarray
2022-11-07 19:26:53,516 31800      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/2/0/0...
2022-11-07 19:26:53,543 31827      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/2/0/0
2022-11-07 19:26:53,568 31852      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/2/0/0
2022-11-07 19:26:53,581 31865      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/1/0/0...
2022-11-07 19:26:53,598 31882      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/1/0/0
2022-11-07 19:26:53,629 31913      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/1/0/0
2022-11-07 19:26:53,641 31925      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/0/0/0...
2022-11-07 19:26:53,664 31948      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/0/0/0
2022-11-07 19:26:53,692 31976      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_2/0/0/0
2022-11-07 19:26:53,704 31988      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/.zarray...
2022-11-07 19:26:53,730 32014      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/.zarray
2022-11-07 19:26:53,751 32035      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/.zarray
2022-11-07 19:26:53,764 32048      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/2/0/0...
2022-11-07 19:26:53,785 32069      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/2/0/0
2022-11-07 19:26:53,878 32162      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/2/0/0
2022-11-07 19:26:53,891 32175      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/1/0/0...
2022-11-07 19:26:53,916 32200      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/1/0/0
2022-11-07 19:26:54,029 32313      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/1/0/0
2022-11-07 19:26:54,042 32326      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/0/0/0...
2022-11-07 19:26:54,067 32351      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/0/0/0
2022-11-07 19:26:54,153 32437      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_0/0/0/0
2022-11-07 19:26:54,165 32449      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/.zarray...
2022-11-07 19:26:54,192 32476      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/.zarray
2022-11-07 19:26:54,213 32497      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/.zarray
2022-11-07 19:26:54,225 32509      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/7/0/0...
2022-11-07 19:26:54,251 32535      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/7/0/0
2022-11-07 19:26:54,324 32608      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/7/0/0
2022-11-07 19:26:54,333 32617      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/6/0/0...
2022-11-07 19:26:54,369 32653      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/6/0/0
@     
2022-11-07 19:26:54,452 32736      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/3/0/0...
2022-11-07 19:26:54,479 32763      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/3/0/0
2022-11-07 19:26:54,549 32833      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/3/0/0
2022-11-07 19:26:54,562 32846      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/11/0/0...
2022-11-07 19:26:54,580 32864      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/11/0/0
2022-11-07 19:26:54,639 32923      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/11/0/0
2022-11-07 19:26:54,653 32937      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/5/0/0...
2022-11-07 19:26:54,670 32954      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/5/0/0
2022-11-07 19:26:54,736 33020      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/5/0/0
2022-11-07 19:26:54,750 33034      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/2/0/0...
2022-11-07 19:26:54,768 33052      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/2/0/0
2022-11-07 19:26:54,843 33127      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/2/0/0
2022-11-07 19:26:54,856 33140      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/4/0/0...
2022-11-07 19:26:54,871 33155      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/4/0/0
2022-11-07 19:26:54,934 33218      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/4/0/0
2022-11-07 19:26:54,948 33232      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/1/0/0...
2022-11-07 19:26:54,966 33250      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/1/0/0
2022-11-07 19:26:55,042 33326      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/1/0/0
2022-11-07 19:26:55,054 33338      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/0/0/0...
2022-11-07 19:26:55,072 33356      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/0/0/0
2022-11-07 19:26:55,146 33430      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/0/0/0
2022-11-07 19:26:55,159 33443      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/9/0/0...
2022-11-07 19:26:55,178 33462      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/9/0/0
2022-11-07 19:26:55,240 33524      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/9/0/0
2022-11-07 19:26:55,253 33537      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/10/0/0...
2022-11-07 19:26:55,271 33555      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/10/0/0
2022-11-07 19:26:55,331 33615      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/10/0/0
2022-11-07 19:26:55,343 33627      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/8/0/0...
2022-11-07 19:26:55,361 33645      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/8/0/0
2022-11-07 19:26:55,422 33706      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/2/8/0/0
2022-11-07 19:26:55,434 33718      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/7/0/0...
2022-11-07 19:26:55,451 33735      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/7/0/0
2022-11-07 19:26:55,542 33826      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/7/0/0
2022-11-07 19:26:55,555 33839      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/6/0/0...
2022-11-07 19:26:55,581 33865      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/6/0/0
2022-11-07 19:26:55,661 33945      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/6/0/0
2022-11-07 19:26:55,674 33958      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/3/0/0...
2022-11-07 19:26:55,701 33985      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/3/0/0
2022-11-07 19:26:55,795 34079      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/3/0/0
2022-11-07 19:26:55,808 34092      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/11/0/0...
2022-11-07 19:26:55,840 34124      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/11/0/0
2022-11-07 19:26:55,919 34203      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/11/0/0
2022-11-07 19:26:55,932 34216      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/5/0/0...
2022-11-07 19:26:55,959 34243      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/5/0/0
2022-11-07 19:26:56,045 34329      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/5/0/0
2022-11-07 19:26:56,058 34342      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/2/0/0...
2022-11-07 19:26:56,085 34369      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/2/0/0
2022-11-07 19:26:56,182 34466      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/2/0/0
2022-11-07 19:26:56,195 34479      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/4/0/0...
2022-11-07 19:26:56,222 34506      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/4/0/0
2022-11-07 19:26:56,316 34600      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/4/0/0
2022-11-07 19:26:56,329 34613      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/1/0/0...
2022-11-07 19:26:56,355 34639      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/1/0/0
2022-11-07 19:26:56,453 34737      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/1/0/0
2022-11-07 19:26:56,467 34751      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/0/0/0...
2022-11-07 19:26:56,494 34778      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/0/0/0
2022-11-07 19:26:56,595 34879      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/0/0/0
2022-11-07 19:26:56,608 34892      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/9/0/0...
2022-11-07 19:26:56,635 34919      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/9/0/0
2022-11-07 19:26:56,727 35011      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/9/0/0
2022-11-07 19:26:56,740 35024      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/10/0/0...
2022-11-07 19:26:56,768 35052      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/10/0/0
2022-11-07 19:26:56,862 35146      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/10/0/0
2022-11-07 19:26:56,875 35159      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/8/0/0...
2022-11-07 19:26:56,904 35188      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/8/0/0
2022-11-07 19:26:57,001 35285      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/1/8/0/0
2022-11-07 19:26:57,015 35299      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/7/0/0...
2022-11-07 19:26:57,033 35317      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/7/0/0
2022-11-07 19:26:57,126 35410      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/7/0/0
2022-11-07 19:26:57,133 35417      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/6/0/0...
2022-11-07 19:26:57,152 35436      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/6/0/0
2022-11-07 19:26:57,242 35526      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/6/0/0
2022-11-07 19:26:57,253 35537      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/3/0/0...
2022-11-07 19:26:57,271 35555      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/3/0/0
2022-11-07 19:26:57,366 35650      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/3/0/0
2022-11-07 19:26:57,377 35661      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/11/0/0...
2022-11-07 19:26:57,394 35678      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/11/0/0
2022-11-07 19:26:57,465 35749      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/11/0/0
2022-11-07 19:26:57,473 35757      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/5/0/0...
2022-11-07 19:26:57,491 35775      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/5/0/0
2022-11-07 19:26:57,563 35847      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/5/0/0
2022-11-07 19:26:57,574 35858      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/2/0/0...
2022-11-07 19:26:57,595 35879      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/2/0/0
2022-11-07 19:26:57,671 35955      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/2/0/0
2022-11-07 19:26:57,681 35965      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/4/0/0...
2022-11-07 19:26:57,707 35991      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/4/0/0
2022-11-07 19:26:57,788 36072      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/4/0/0
2022-11-07 19:26:57,799 36083      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/1/0/0...
2022-11-07 19:26:57,828 36112      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/1/0/0
2022-11-07 19:26:57,913 36197      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/1/0/0
2022-11-07 19:26:57,924 36208      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/0/0/0...
2022-11-07 19:26:57,951 36235      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/0/0/0
2022-11-07 19:26:58,030 36314      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/0/0/0
2022-11-07 19:26:58,041 36325      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/9/0/0...
2022-11-07 19:26:58,067 36351      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/9/0/0
2022-11-07 19:26:58,141 36425      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/9/0/0
2022-11-07 19:26:58,152 36436      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/10/0/0...
2022-11-07 19:26:58,169 36453      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/10/0/0
2022-11-07 19:26:58,241 36525      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/10/0/0
2022-11-07 19:26:58,251 36535      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/8/0/0...
2022-11-07 19:26:58,268 36552      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/0/0/8/0/0
@  
2022-11-07 19:26:58,351 36635      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/zattrs_copy...
2022-11-07 19:26:58,368 36652      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/zattrs_copy
2022-11-07 19:26:58,390 36674      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/zattrs_copy
2022-11-07 19:26:58,399 36683      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/.zgroup...
2022-11-07 19:26:58,416 36700      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/.zgroup
2022-11-07 19:26:58,436 36720      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/.zgroup
2022-11-07 19:26:58,445 36729      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/.zarray...
2022-11-07 19:26:58,461 36745      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/.zarray
2022-11-07 19:26:58,482 36766      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/.zarray
2022-11-07 19:26:58,491 36775      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/2/0/0...
2022-11-07 19:26:58,507 36791      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/2/0/0
2022-11-07 19:26:58,527 36811      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/2/0/0
2022-11-07 19:26:58,537 36821      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/1/0/0...
2022-11-07 19:26:58,599 36883      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/1/0/0
2022-11-07 19:26:58,637 36921      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/1/0/0
2022-11-07 19:26:58,647 36931      [3-thread-1] INFO   ts.importer.transfers.UploadFileTransfer - Transferring /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/0/0/0...
2022-11-07 19:26:58,663 36947      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/0/0/0
2022-11-07 19:26:58,682 36966      [3-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_4/0/0/0
2022-11-07 19:26:59,734 38018      [2-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_END
2022-11-07 19:26:59,826 38110      [2-thread-1] INFO   ormats.importer.cli.LoggingImportMonitor - IMPORT_STARTED Logfile: 1703492
2022-11-07 19:27:00,883 39167      [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor - METADATA_IMPORTED Step: 1 of 5  Logfile: 1703492
2022-11-07 19:27:04,168 42452      [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - PIXELDATA_PROCESSED Step: 2 of 5  Logfile: 1703492
2022-11-07 19:27:04,826 43110      [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor - THUMBNAILS_GENERATED Step: 3 of 5  Logfile: 1703492
2022-11-07 19:27:04,852 43136      [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - METADATA_PROCESSED Step: 4 of 5  Logfile: 1703492
2022-11-07 19:27:04,872 43156      [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor - OBJECTS_RETURNED Step: 5 of 5  Logfile: 1703492
2022-11-07 19:27:04,962 43246      [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - IMPORT_DONE Imported file: /uod/idr/objectstore/minio/idr/v0.4/idr0050/4995115.zarr/multiscales2_3/2/0/0
Other imported objects:
Fileset:132559

==> Summary
209 files uploaded, 1 fileset created, 2 images imported, 0 errors in 0:00:40.896
@will-moore
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I created another multiple-multiscale NGFF at https://ome.github.io/ome-ngff-validator/?source=https://minio-dev.openmicroscopy.org/idr/v0.4/idr0050/4995115.zarr which seems to import fine - both images look correct.
So, just something strange about the first test image above? Maybe something to do with images of different dimensions?

@will-moore will-moore mentioned this issue Nov 9, 2022
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@will-moore
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Having tested some more with another sample, it seems that the presence of a single Z/T image is what triggers the "corruption" of the planes on previous images.
Sample currently available at https://ome.github.io/ome-ngff-validator/?source=https://minio-dev.openmicroscopy.org/idr/v0.4/idr0062/6001240.zarr
gives 3 Z-stack images where all Z/C planes are the same:

Screenshot 2022-11-10 at 13 07 17

@joshmoore
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To test the support for various NGFF viewers for "multiple multiscales", I created a sample at https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0050A/4995115.zarr:

So a file under idr/zarr/v0.4 is in an unknown state? If so, can this be moved to test-data until we've figured this out?

Viewing the same NGFF in vizarr looks fine (although the 2nd multiscales image is ignored)

This is the behavior that I would actually expect, though I assume we need to work on the semantics of multiple multiscales. @dgault, what behavior would you expect?

@will-moore
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I'm pretty sure that https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0050A/4995115.zarr is valid.

ZarrReader imports both images (as expected 👍 ) but the first image is 'corrupted' (not expected).

@joshmoore
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I'm pretty sure that https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0050A/4995115.zarr is valid.

Even the "pretty sure" worries me.

@will-moore
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Well, I'm as sure as I can be. https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0050A/4995115.zarr says it's valid.

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