/
NAMESPACE
147 lines (146 loc) · 3.96 KB
/
NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(ClustDiffGenes)
export(DISCBIO)
export(DISCBIO2SingleCellExperiment)
export(J48DT)
export(J48DTeval)
export(Jaccard)
export(NetAnalysis)
export(Networking)
export(PPI)
export(PlotMBpca)
export(RpartDT)
export(RpartEVAL)
export(VolcanoPlot)
export(as.DISCBIO)
export(customConvertFeats)
export(plotGap)
exportClasses(DISCBIO)
exportMethods(ClassVectoringDT)
exportMethods(ClustDiffGenes)
exportMethods(Clustexp)
exportMethods(DEGanalysis)
exportMethods(DEGanalysis2clust)
exportMethods(Exprmclust)
exportMethods(FinalPreprocessing)
exportMethods(FindOutliers)
exportMethods(KmeanOrder)
exportMethods(NoiseFiltering)
exportMethods(Normalizedata)
exportMethods(PCAplotSymbols)
exportMethods(PlotmclustMB)
exportMethods(clustheatmap)
exportMethods(comptSNE)
exportMethods(plotExptSNE)
exportMethods(plotLabelstSNE)
exportMethods(plotOrderTsne)
exportMethods(plotSilhouette)
exportMethods(plotSymbolstSNE)
exportMethods(plottSNE)
exportMethods(pseudoTimeOrdering)
import(org.Hs.eg.db)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(AnnotationDbi,keys)
importFrom(NetIndices,GenInd)
importFrom(RColorBrewer,brewer.pal)
importFrom(RWeka,J48)
importFrom(TSCAN,TSCANorder)
importFrom(cluster,clusGap)
importFrom(cluster,maxSE)
importFrom(cluster,silhouette)
importFrom(fpc,calinhara)
importFrom(fpc,cluster.stats)
importFrom(fpc,clusterboot)
importFrom(fpc,dudahart2)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,pairs)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,rasterImage)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(httr,GET)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,as_adjacency_matrix)
importFrom(igraph,average.path.length)
importFrom(igraph,betweenness)
importFrom(igraph,degree)
importFrom(igraph,distance_table)
importFrom(igraph,get.adjacency)
importFrom(igraph,get.edgelist)
importFrom(igraph,get.shortest.paths)
importFrom(igraph,graph.adjacency)
importFrom(igraph,graph.data.frame)
importFrom(igraph,mean_distance)
importFrom(igraph,minimum.spanning.tree)
importFrom(impute,impute.knn)
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,validObject)
importFrom(png,readPNG)
importFrom(rpart,rpart)
importFrom(rpart.plot,rpart.plot)
importFrom(statmod,glmgam.fit)
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,fitted.values)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,pbinom)
importFrom(stats,pchisq)
importFrom(stats,pnbinom)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,smooth.spline)
importFrom(stats,var)
importFrom(tsne,tsne)
importFrom(utils,capture.output)
importFrom(utils,download.file)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(vegan,vegdist)
importFrom(withr,local_options)
importFrom(withr,with_options)
importFrom(withr,with_par)