-
Notifications
You must be signed in to change notification settings - Fork 27
/
alumni.html
1164 lines (1064 loc) · 58.5 KB
/
alumni.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>NRNB: Mentored Alumni</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="">
<meta name="author" content="">
<!-- Le styles -->
<link href="assets/css/bootstrap.css" rel="stylesheet">
<!-- <script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.7/jquery.js"></script> -->
<link href="assets/css/bootstrap-responsive.css" rel="stylesheet">
<link href="assets/css/nrnb.css" rel="stylesheet">
<!-- HTML5 shim, for IE6-8 support of HTML5 elements -->
<!--[if lt IE 9]>
<script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
<!-- <script>
$(function () {
var activeTab = $('[href=' + location.hash + ']');
activeTab && activeTab.tab('show');
window.scrollTo(0, 0);
});
</script>
<style type="text/css">
body {
padding-top: 60px;
padding-bottom: 40px;
}
</style>-->
<!-- HTML5 shim, for IE6-8 support of HTML5 elements -->
<!--[if lt IE 9]>
<script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
<!-- Fav and touch icons -->
<link rel="shortcut icon" href="../assets/ico/favicon.ico">
<link rel="apple-touch-icon-precomposed" sizes="144x144"
href="../assets/ico/apple-touch-icon-144-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="114x114"
href="../assets/ico/apple-touch-icon-114-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="72x72"
href="../assets/ico/apple-touch-icon-72-precomposed.png">
<link rel="apple-touch-icon-precomposed"
href="../assets/ico/apple-touch-icon-57-precomposed.png">
</head>
<body>
<div class="belt white">
<div class="container">
<ul class="nav nav-tabs" id="tabs">
<li class="active"><a href="#academy-tab" data-toggle="tab">NRNB Academy</a></li>
<li><a href="#gsoc-tab" data-toggle="tab">GSoC</a></li>
</ul>
<div class="tab-content">
<div class="tab-pane active" id="academy-tab">
<a class="btn btn-info btn-mini pull-right" href="gsoc.html">Back to Academy</a>
<!--<a name="NRNBEnrolled"></a>
<h3>NRNB Enrolled Students</h3> -->
<h3>NRNB Academy Alumni</h3>
<dl>
<a name="2018SummerSessionAlumni"></a>
<h4>Summer Session 2018</h4>
<dt><b>Mohamed Elattma</b> - University of California Santa Cruz, Santa Cruz, CA </dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2018mohamed_elattma" target="_blank">boundaryLayout Revamp</a>
<br>Mentored by Scooter Morris</dd>
<h4>2016</h4>
<dt><b>Aarya Venkat</b> - University of California San Diego, San Diego, CA </dt>
<dd><a href="https://github.com/HelloAarya/cytoscape-pathways">Modeling the Effects of Small Molecule Binders on Pathways in Cytoscape</a>
<br>Mentored by Scooter Morris</dd>
<dt> <b>Ivan Bestvina</b> - University of Zagreb, Zagreb, Croatia</dt>
<dd><a href="https://github.com/gabrielet/application" target="_blank">Random networks for CentiScaPe</a>
<br>Mentored by Gabriele Tosadori</dd>
<a name="2015SummerSessionAlumni"></a>
<h4>Summer Session 2015</h4>
<dt> <b>Matthias König</b> - Charité Universitätsmedizin Berlin, Berlin, Germany</dt>
<dd><a href="https://github.com/nrnb/cy3sbml" target="_blank">Cy3SBML: Make CySBML a Cytoscape 3 app</a>
<br>Mentored by Andreas Dräger and Nicolas Rodriguez</dd>
<dt><b>Metin Can Siper</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/sbgnviz-js" target="_blank">Improving Cytoscape.js-based viewer for SBGN process description diagrams with better layout and advanced complexity management operations</a>
<br>Mentored by Uğur Doğrusöz and Onur Sümer</dd>
<dt><b>Sakshi Pratap</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2015sakshi" target="_blank">CentiScaPe for multiple networks analysis and graphical output enhancement</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt><b>Vijay Dhameliya</b> - Dhirubhai Ambani Institute of Information and Communication Technology,
Gandhinagar, India</dt>
<dd><a href="https://github.com/nrnb/clusterMaker2" target="_blank">Adding PCA to clusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
<h4>2015</h4>
<dt>
<b>Vijay Dhameliya</b> - Dhirubhai Ambani Institute of Information and Communication Technology,
Gandhinagar, India
</dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2014vijay" target="_blank">Network animation tools</a>
<br>Mentored by Scooter Morris</dd>
<h4>2013</h4>
<dt>
<b>Chao Zhang</b> - University of Missouri, Columbia, Missouri
</dt>
<dd><a href="https://github.com/nrnb/gsoc2012chao" target="_blank">NOA and Avalon Cytoscape plugins for visualization and
analysis of ontology-annotated networks</a>
<br>Mentored by Alexander Pico</dd>
<h4>2012</h4>
<dt>
<b>Sravanthi Rani Sinha</b> - KMIT, Hyderabad, India
</dt>
<dd><a href="https://github.com/nrnb/nrnbacademy2012sravanthi" target="_blank">Develop a stoichiometry plugin for SBGN in PathVisio</a>
<br>Mentored by Martijn van Iersel</dd>
</dl>
</div>
<div class="tab-pane" id="gsoc-tab">
<a class="btn btn-info btn-mini pull-right" href="gsoc.html">Back
to GSoC</a>
<h3>NRNB GSoC Alumni</h3>
<p>
<i><b>We have mentored a total of 186 successfully completed projects by
156 unique students with an overall success rate of 95%</b></i>
</p>
<p class="text-success">2023 (8/8 passing students, 100%) </p>
<dl>
<dt><b>Kartik Kumar Pawar</b> - BITS Pilani, Pilani, India</dt>
<dd><a href="https://github.com/RBVI/CyPlot/tree/Develop-Kartik" target="_blank">Develop new features for Cytoscape App - cyPlot</a>
<br>Mentored by Yihang Xin</dd>
<dt><b>Phuc Nguyen</b> - University of Cincinnati, Cincinnati, OH, USA</dt>
<dd><a href="https://github.com/sanderlab/CellBox" target="_blank">Convert CellBox code from Tensorflow to Pytorch</a>
<br>Mentored by Bo Yuan</dd>
<dt><b>Mahesh Kasbe</b> - Bhavans College, Mumbai India</dt>
<dd><a href="https://github.com/maheshkasabe/GraphSpace" target="_blank">Setting up the CI/CD Pipeline using Github Actions on GraphSpace</a>
<br>Mentored by Yash Agrawal</dd>
<dt><b>Akash Mondal</b> - The LNM Institute Of Information Technology, India</dt>
<dd><a href="https://github.com/AkMo3/cytoscape.js-blog" target="_blank">Automate Cytoscape.js release process using GitHub Actions</a>
<br>Mentored by Max Franz</dd>
<dt><b>Favour James</b> - Obafemi Awolowo University, Ife, Nigeria</dt>
<dd><a href="https://github.com/cannin/gsoc_2023_pytorch_pathway_commons/blob/main/docs/_reports/Final%20Report%20of%20GSoC%202023.pdf" target="_blank">Generate Example Dataset for PyTorch Geometric Based on Pathway Commons and Prototype</a>
<br>Mentored by Yoshitaka Inoue</dd>
<dt><b>Ermis Delopoulos</b> - Katholieke Universiteit Leuven, Leuven, Belgium</dt>
<dd><a href="https://ermismd.github.io/MGG/" target="_blank">Development of a Cytoscape App for microbe-microbe association networks</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Siddharth Chaudhary</b> - The LNM Institute Of Information Technology, India</dt>
<dd><a href="https://github.com/sidd-2203/cellminercdb/tree/GSoC-Staging" target="_blank">Implement a R shiny module for Network Analysis in CellMinerCDB</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Jigyasa Gupta</b> - Dayananda Sagar College of Engineering, Bangalore, India</dt>
<dd><a href="https://gist.github.com/Jigyasa-G/543d3a96463308479bb86aa866323391" target="_blank">Supporting Pathway Commons and ssGSEA in clusterProfiler</a>
<br>Mentored by Guangchuang Yu</dd>
</dl>
<p class="text-success">2022 (8/10 passing students, 80%) </p>
<dl>
<dt><b>Fizza Rubab</b> - Habib University, Karachi, Pakistan</dt>
<dd><a href="https://medium.com/@fizza.rubab/google-summer-of-code-2022-cloud-copasi-nrnb-6308ef05edb2" target="_blank">Cloud-COPASI</a>
<br>Mentored by Hasan Baig</dd>
<dt><b>Selbi Ereshova</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://docs.google.com/document/d/17Yp1YPOVLc3PJYNRKO9FeCiH_bzyK8rVv08jGs3ilyQ/edit" target="_blank">SBML-MINERVA support in Newt</a>
<br>Mentored by Alexander Mazein</dd>
<dt><b>Sara Jovanovska</b> - Utrecht University, Utrecht, Netherlands</dt>
<dd><a href="https://sajo25.github.io/netboxr/" target="_blank">NetBoxR Updates</a>
<br>Mentored by Eric Liu</dd>
<dt><b>Akash Mondal</b> - The LNM Institute Of Information Technology, Jaipur, India</dt>
<dd><a href="https://gist.github.com/AkMo3/260b155ffc095ed52e1beccaa318cbe0" target="_blank">Updates to the Enrichment Table App</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Aniket Ranjan</b> - Indian Institute of Technology, Kharagpur, India</dt>
<dd><a href="https://github.com/cannin/graph_neural_network_drug_response/blob/main/docs/_reports/GSoC_final_report.md" target="_blank">Adding visualization of protein-complex interaction to OpenPIP</a>
<br>Mentored by Gary Bader</dd>
<dt><b>Yoshitaka Inoue</b> - University of Minnesota, MN, USA</dt>
<dd><a href="https://github.com/cannin/graph_neural_network_drug_response/blob/main/docs/_reports/GSoC_final_report.md" target="_blank">Create a Pipeline from data extraction to execution of GNN based Drug Response Prediction</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Aditya Singhal</b> - Lakehead University, Thunder Bay, Canada</dt>
<dd><a href="https://github.com/combine-org/combine-notebooks" target="_blank">Create Jupyter Notebooks showcasing COMBINE Standards</a>
<br>Mentored by Matthias König</dd>
<dt><b>Mohit Makwana</b> - Birla Institute of Technology and Science, Mumbai, India</dt>
<dd><a href="https://github.com/SynBioDex/SBOL-utilities/pull/186" target="_blank">Conversion between GenBank and SBOL3</a>
<br>Mentored by Tom Mitchell</dd>
</dl>
<p class="text-success">2021 (13/14 passing students, 93%) </p>
<dl>
<dt><b>Indraneel Ghosh</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021indraneel_ghosh" target="_blank">Simple Enrichment Tool for Analysis</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Dharna Chandrakar</b> - National Institute of Technology, Raipur, India</dt>
<dd>Prepare cyjShiny for R Package Repository Submission
<br>Mentored by Paul Shannon</dd>
<dt><b>Sankha Das</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021sankha_das" target="_blank">SBML4Humans - Interactive SBML Report for Humans</a><br />
<a href="https://sbml4humans-gsoc-2021.blogspot.com/" target="_blank">Sankha's blog</a>
<br>Mentored by Matthias König</dd>
<dt><b>Can Alpay</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2021can_alpay" target="_blank">PD to AF conversion facility in Newt</a>
<br>Mentored by Alexander Mazein</dd>
<dt><b>Pritam Saha</b> - Jadavpur University, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021pritam_saha" target="_blank">Develop a Cytoscape App for the Casual Path Algorithm</a>
<br>Mentored by Ozgun Babur</dd>
<dt><b>Noah Liguori-Bills</b> - The University of Connecticut, CT, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2021noah_liguori-bills" target="_blank">Expand ModelBricks.org and VCell API</a>
<br>Mentored by Michael Blinov</dd>
<dt><b>Pankaj Yadav</b> - Indian Institute of Technology, Varanasi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021pankaj_yadav" target="_blank">Local DB support for SBGN maps in Newt</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Javed Ali</b> - Indian Institute of Technology Kharagpur, Dehli, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021javed_ali" target="_blank">Adding analysis report and Direct import from GEO databases to ABioTrans Plus</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Maija Utriainen</b> - Maastricht University, Maastricht, Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2021maija_utriainen" target="_blank">Implementing multiple clustering algorithms and dimensionality reduction techniques on clusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
<dt><b>Nikita Mahoviya</b> - National Institute of Technology Hamirpur, Lucknow, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021nikita_mahoviya" target="_blank">Develop GUI for ImageJ groovy script calling VCell API</a><br />
<a href="https://nrnb-gsoc21.blogspot.com/" target="_blank">Nikita's blog</a>
<br>Mentored by Anne Cowan</dd>
<dt><b>Mohmed Soudy</b> - Ain Shams University, Cairo, Egypt</dt>
<dd><a href="https://github.com/nrnb/gsoc2021mohmed_soudy" target="_blank">Adding Multi-omics data support to ABioTrans Plus</a><br />
<a href="https://medium.com/@mohmedsoudy77/google-summer-of-code-2021-work-report-43e9d73b03bb" target="_blank">Mohmed's blog</a>
<br>Mentored by Thuy Tien Bui</dd>
<dt><b>Pranav Ballaney</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021pranav_ballaney" target="_blank">SBML Simulator in Rust</a><br />
<a href="https://pranavballaney.blogspot.com/" target="_blank">Pranav's blog</a>
<br>Mentored by Akito Tabira</dd>
<dt><b>Siras Hakobyan</b> - Institute of Molecular Biology NAS RA, Yerevan, Armenia</dt>
<dd><a href="https://github.com/nrnb/gsoc2021siras_hakobyan" target="_blank">TumorComparer, updated version</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Aniket Ranjan</b> - Indian Institute of Technology Kharagpur, Kharagpur, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2021aniket_ranjan" target="_blank">Enhancing the admin panel of openPIP</a>
<br>Mentored by Gary Bader</dd>
</dl>
<p class="text-success">2020 (15/15 passing students, 100%) </p>
<dl>
<dt><b>Hemant Yadav</b> - Indian Institute of Technology Roorkee, Roorkee, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020hemant_yadav" target="_blank">Implementation of SBML-JSON converter and SBML-JSON scheme</a>
<a href="https://hemant-gsoc2020.blogspot.com/" target="_blank">Hemant's blog</a>
<br>Mentored by Matthias König</dd>
<dt><b>Saksham Raghuvanshi</b> - JSS Academy of Technical Education, Noida, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020saksham_raghuvanshi" target="_blank">Redevelop Model Bricks code base architecture</a>
<br>Mentored by Frank Morgan</dd>
<dt><b>Alice Meng</b> - Zhejiang University, Hangzhou, China</dt>
<dd><a href="https://github.com/nrnb/gsoc2020alice_meng" target="_blank">Integration of sequence visualization into SynBioHub</a><br />
<a href="https://medium.com/@alice.menglh/gsoc-2020-integration-of-sequence-visualization-into-synbiohub-bca7c0ae195" target="_blank">Alice's blog</a>
<br>Mentored by Geoff Baldwin</dd>
<dt><b>Merve Kılıçarslan</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2020merve_kilicarslan" target="_blank">Enhancing PathwayMapper in cBioPortal and PathwayMapper editor</a>
<a href="https://docs.google.com/document/d/1AaGF7OFiccEPykvE5y-3TdjbSD7NhHsjWx2kpGGvhrk/edit" target="_blank">Merve's blog</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Medha Bhattacharya</b> - Indira Gandhi Delhi Technical University for Women, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020medha_bhattacharya" target="_blank">Development of a system that generates spatial SBML models using deep learning</a><br />
<a href="https://docs.google.com/document/d/1SbEAJ45XClPG57L4TEGGds2H71Pwnhr3um2B09u1rG0/edit" target="_blank">Medha's blog</a>
<br>Mentored by Akira Funahashi</dd>
<dt><b>Hemil Panchiwala</b> - Indian Institute of Technology Roorkee, Roorkee, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020hemil_panchiwala" target="_blank">Simulation of systems biology models in Java: support for new features</a>
<a href="https://gsoc20hemil.blogspot.com/" target="_blank">Hemil's blog</a>
<br>Mentored by Andreas Dräger</dd>
<dt><b>Priti Shaw</b> - Jadavpur University, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020priti_shaw" target="_blank">Enhance Web Interface for Natural-Language Processing Extracted Interaction Network</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Mudasir Shaikh</b> - Habib University, Karachi, Pakistan</dt>
<dd><a href="https://github.com/nrnb/gsoc2020mudasir_shaikh" target="_blank">Generating detailed SBOL representation of genetic logic circuits along with improved designing capability, and SBML export in GeneTech</a>
<a href="https://ms03831.github.io/GSoC-20/final-report-gsoc20-genetech/" target="_blank">Mudasir's blog</a>
<br>Mentored by Hasan Baig</dd>
<dt><b>Bhavesh Narra</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020bhavesh_narra" target="_blank">LACE-View : A Visualizer for Longitudinal Clonal Trees</a>
<br>Mentored by Marco Antoniotti</dd>
<dt><b>Debashish Roy</b> - Jabalpur Engineering College, Jabalpur, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020debashish_roy" target="_blank">Developing an Optimization Library for libRoadRunner</a>
<a href="https://debashish98.blogspot.com/" target="_blank">Debashish's blog</a>
<br>Mentored by Herbert Sauro</dd>
<dt><b>Rahul Agrawal</b> - Indian Institute of Technology, Kharagpur, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020rahul_agrawal" target="_blank">Adding Network Analysis and Visualisation Features to ABioTrans</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Yash Agrawal</b> - Indian Institute of Technology, Guwahati, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020yash_agrawal" target="_blank">Implement a comment/discussion system in GraphSpace</a>
<a href="https://yashgsoc2020graphspace.blogspot.com/" target="_blank">Yash's blog</a>
<br>Mentored by Daniyal Jahan</dd>
<dt><b>Isabel Pötzsch</b> - University of Cambridge, Wiesbaden, Germany</dt>
<dd><a href="https://github.com/nrnb/gsoc2020isabel_potzsch" target="_blank">Spreadsheet Plug-in for SynBioHub</a>
<a href="https://medium.com/@IsaMarleen" target="_blank">Isabel's blog</a>
<br>Mentored by Jet Mante</dd>
<dt><b>Sahil Jha</b> - Amity university, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2020sahil_jha" target="_blank">Improving compmodelmatch.org</a>
<a href="https://medium.com/stray-stream" target="_blank">Sahil's blog</a>
<br>Mentored by Michael Blinov</dd>
<dt><b>Maija Utriainen</b> - Maastricht University, Maastricht, Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2020maija_utriainen" target="_blank">Implementing R-MCL, ML-MCL, Louvain and Leiden clustering algorithms to Cytoscape app ClusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
</dl>
<p class="text-success">2019 (11/11 passing students, 100%) </p>
<dl>
<dt><b>Daniyal Jahan</b> - Technische Universität Berlin, Berlin, Germany</dt>
<dd><a href="https://github.com/nrnb/gsoc2019daniyal_jahan" target="_blank">GraphSpace: Diff for Graphs</a>
<br>Mentored by T.M. Murali</dd>
<dt><b>Perman Atayev</b> - Bilkent university, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2019Perman_Atayev" target="_blank">CiSE layout as a Cytoscape.js extension and an automated layout web service for popular Cytoscape.js layout extensions</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Bhavye Jain</b> - Indian Institute of Technology, Roorkee, India</dt>
<dd><a href="https://github.com/bhavyejain/jsbml" target="_blank">Validation of spatial systems biology models in Java</a><br />
<a href="https://gsoc19-spatial.blogspot.com/" target="_blank">Bhavye's blog</a>
<br>Mentored by Nicolas Rodiguez</dd>
<dt><b>Manas Awasthi</b> - Cluster Innovation Centre, University of Delhi, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019Manas_Awasthi" target="_blank">BridgeDb Major Release</a>
<br>Mentored by Egon Willighagen</dd>
<dt><b>Debashish Roy</b> - Jabalpur Engineering College, Katni, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019debashish_roy" target="_blank">Integrating RRPlugins with libRoadRunner and devloping Differential Evolution optimizer plugin</a><br />
<a href="https://debashish98.blogspot.com/" target="_blank">Debashish's blog</a>
<br>Mentored by Herbert Sauro</dd>
<dt><b>Robin Simonot</b> - Université de Nantes, Paris, France</dt>
<dd><a href="https://github.com/nrnb/gsoc2019Robin_Simonot" target="_blank">Simulator for Systems Biology</a>
<br>Mentored by Akira Funahashi</dd>
<dt><b>Rohit R. Chattopadhyay</b> - Jadavpur University, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019rohit_chattopadhyay" target="_blank">Web Interface for NLP Extracted Interaction Network</a><br />
<a href="https://cannin.github.io/ihop-reach/" target="_blank">Rohit's blog</a>
<br>Mentored by Augustin Luna</dd>
<dt><b>Ayush Ranjan Lohani</b> - Indian Institute of Engineering Science And Technology, Shibpur, Kolkata, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019ayush_lohani" target="_blank">Implement a machine-readable graph legend interface</a>
<br>Mentored by Aditya Bharadwaj</dd>
<dt><b>Nikhil Ghodke</b> - Vishwakarma Institute of Technology, Pune, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019nikhil_ghodke" target="_blank">New Build System for Insilico</a><br />
<a href="https://medium.com/@nikhilghodke1210" target="_blank">Nikhil's blog</a>
<br>Mentored by Roman Schulte</dd>
<dt><b>Sarthak Srivastava</b> - Birla Institute of Technology and Sciences, Pilani, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2018gsoc2019sarthak_srivastava" target="_blank">App Store for Cytoscape Apps</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Kaustubh Trivedi</b> - Indian Institute of Technology - Roorkee, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2019kaustubh_trivedi" target="_blank">Extending ModelPolisher to a universal model annotation tool</a>
<br>Mentored by Matthias König</dd>
</dl>
<p class="text-success">2018 (10/10 passing students, 100%) </p>
<dl>
<dt><b>Vineeth Chelur</b> - International Institute of Information Technology(IIIT), Hyderabad, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2018vineeth_chelur" target="_blank">Implement SBML array support in libRoadRunner</a><br />
<a href="https://crvineeth97.github.io/" target="_blank">Vineeth's blog</a>
<br>Mentored by Herbert Sauro</dd>
<dt><b>Kaan Sancak</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/iVis-at-Bilkent/pathway-mapper">PathwayMapper improvements and integration into cBioPortal</a><br />
<a href="https://docs.google.com/document/d/1JX_TQpZujgXMBA5T4xvceIm_qu-iVNQ4hzJTZHUqQIk/edit">Kaan's blog</a>
<br>Mentored by Onur Sumer</dd>
<dt><b>Sarthak Srivastava</b> - Birla Institute of Technology and Sciences, New Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2018sarthak_srivastava" target="_blank">App Store for Cytoscape Apps</a>
<br>Mentored by Alex Pico</dd>
<dt><b>Lucrezia Patruno</b> - University of Milano-Bicocca, Milan, Italy</dt>
<dd><a href="https://github.com/nrnb/gsoc2018lucrezia_patruno" target="_blank">cyTRON/JS: a backend and a cytoscape.js visualizer for cancer progression models</a>
<br>Mentored by Marco Antoniotti</dd>
<dt><b>Ahmet Çandıroğlu</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/iVis-at-Bilkent/newt" target="_blank">Improvements for Newt, a Cytoscape.js based SBGN editor</a><br />
<a href="https://docs.google.com/document/d/1b0ifeWThTduHsaTv0E6HlqS5u2Ay-mb1GXe-p9ILf8s/edit" target="_blank">Ahmet's blog</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt><b>Prem Prakash Singh</b> - Birla Institute of Technology and Science, Pilani, India</dt>
<dd><b>Integrating CAD and CAM tools for automating a synthetic biology workflow</b><br />
<a href="https://github.com/nrnb/gsoc2018prem_prakash_singh-1" target="_blank">Prem's GitHub 1</a> /
<a href="https://github.com/nrnb/gsoc2018prem_prakash_singh-2">Prem's GitHub 2</a> /
<a href="https://medium.com/integration-of-sboldesigner-with-boost" target="_blank">Prem's blog</a>
<br>Mentored by Ernst Oberortner</dd>
<dt><b>Shalin Shah</b> - Duke University, Durham, NC, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2018shalin" target="_blank">Simulating systems biology models in Java</a><br />
<a href="https://ssdoesgsoc.wordpress.com/" target="_blank">Shalin's blog</a>
<br>Mentored by Andreas Drager</dd>
<dt><b>Dara Akdag</b> - Maastricht University, Maastricht, Netherlands</dt>
<dd><a href="https://github.com/nrnb/gsoc2018dara_akdag" target="_blank">Upgrading ontology tagging at WikiPathways</a>
<br>Mentored by Martina Kutmon</dd>
<dt><b>Daniyal Jahan</b> - Technical University of Berlin, Berlin, Germany</dt>
<dd><a href="https://github.com/nrnb/gsoc2018daniyal" target="_blank">Git for Graphs</a><br />
<a href="https://daniyaljw.blogspot.com" target="_blank">Daniyal's blog</a>
<br>Mentored by Aditya Bharadwaj</dd>
<dt><b>Sunwoo Kang</b> - Stanford University of Berlin, Stanford, CA, USA</dt>
<dd><a href="https://github.com/nrnb/gsoc2018sunwoo_kang" target="_blank">Rendering complex genetic designs with dnaplotlib for a beautiful visualization of genetic circuits</a><br />
<a href="https://precisionhealthblog.wordpress.com/" target="_blank">Sunwoo's blog</a>
<br>Mentored by Bryan Bartley</dd>
</dl>
<p class="text-success">2017 (20/20 passing students, 100%) </p>
<dl>
<dt><b>Raghav Jajodia</b> - Indian Institute of Engineering Science and Technology, Shibpur, India</dt>
<dd><b>Adding support for PSIMI-TAB format to the Disease Variant Impact (DV-IMPACT) Database</b><br />
<a href="https://github.com/nrnb/gsoc2017raghav_jajodia_1" target="_blank">Raghav's GitHub 1</a> /
<a href="https://github.com/nrnb/gsoc2017raghav_jajodia_2" target="_blank">Raghav's GitHub 2</a><br />
<a href="http://jajodiaraghav.github.io/gsoc/" target="_blank">Raghav's blog</a>
<br>Mentored by Mohamed Helmy</dd>
<dt><b>Rishabh Sethi</b> - Indian Institute of Technology, Delhi, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2017rishabh_sethi" target="_blank">Cytoscape app for GraphSpace</a><br />
<a href="https://rishabhsethi.com/blog/2017/08/26/google-summer-of-code-final-report/" target="_blank">Rishabh's blog</a>
<br>Mentored by T.M Murali</dd>
<dt><b>Hasan Balcı</b> - Bilkent University, Ankara, Turkey</dt>
<dd><a href="https://github.com/nrnb/gsoc2017hasan_balci" target="_blank">Cytoscape.js Extension for Querying Large Networks</a><br />
<a href="https://docs.google.com/document/d/1Le_tQxiBct3Z6wIvD7azYkh5XjpCOvYEaEb-rV1ifSI/edit" target="_blank">Hasan's blog</a>
<br>Mentored by Ozgun Babur</dd>
<dt><b>Edoardo Galimberti</b> - University of Turin, Turin, Italy</dt>
<dd><a href="https://github.com/nrnb/gsoc2017edoardo_galimberti" target="_blank">cyTRON: a Cytoscape app for the visualization of evolutionary trajectories in cancer progression</a><br />
<a href="https://github.com/BIMIB-DISCo/cyTRON/blob/master/README.md" target="_blank">Edoardo's report</a>
<br>Mentored by Marco Antoniotti</dd>
<dt><b>Zach Zundel</b> - University of Utah, Salt Lake City, US</dt>
<dd><b>Develop a Synthetic Biology Publication Workflow that Leverages the Synthetic Biology Open Language</b><br />
<a href="https://github.com/nrnb/gsoc2017zach_zundel_1" target="_blank">Zach's GitHub 1</a><br />
<a href="https://github.com/nrnb/gsoc2017zach_zundel_2" target="_blank">Zach's GitHub 2</a><br />
<a href="https://medium.com/sbol-workflows/latest" target="_blank">Zach's blog</a>
<br>Mentored by Neil Wipat</dd>
<dt><b>Takahiro Yamada</b> - Keio University, Tokyo, Japan</dt>
<dd><a href="https://github.com/nrnb/gsoc2017takahiro_yamada" target="_blank">Develop a web service which provides simulation / steady state analysis / parameter estimation with SBML models</a><br />
<a href="http://gsoc2017developwebservice.blogspot.jp/" target="_blank">Takahiro's blog</a>
<br>Mentored by Kaito Li</dd>
<dt><b>Shaik Asifullah</b> - BITS Pilani, Goa, India</dt>
<dd><a href="https://github.com/nrnb/gsoc2017shaik_asifullah" target="_blank">Developing a Cluster Computing Framework for Dynamical Modeling</a><br />
<a href="https://medium.com/@s.asifullah7/a-never-ending-journey-58b33da05409" target="_blank">Shaik's blog</a>
<br>Mentored by Kyle Medley</dd>
<dt><b>Long Zhang</b> - Chengdu University of Information Technology, Chendu, China</dt>
<dd><a href="https://github.com/nrnb/gsoc2017long_zhang" target="_blank">Developing a web interface for DoMo-Pred</a><br />
<a href="https://gist.github.com/ankanch/2fd83be30010470a15a08a603ad3a19a" target="_blank">Long's report</a>
<br>Mentored by Shobhit Jain</dd>
<dt><b>Peter Dun</b> - Stanford University, Palo Alto, US</dt>
<dd><a href="https://github.com/nrnb/gsoc2017peter_dun" target="_blank">Extending the IBW Biocompilation Interface with SBOL and SBML Import/Export Capabilities</a><br />
<a href="https://peterdun.wordpress.com/" target="_blank">Peter's blog</a>
<br>Mentored by Harold Fellerman</dd>
<dt>
<b>Guodong Xu</b> - Wuhan University of Technology, Wuhan, China
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017guodong_xu_1" target="_blank">Implement GeneMANIA in Julia for High-performance Computing</a>
<br>Mentored by Shradda Pai</dd>
<dt>
<b>Ivan Bestvina</b> - University of Zagreb, Zagreb, Croatia
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017ivan_bestvina" target="_blank">Implement Network Quantity Information measure in CentiScaPe</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt>
<b>Sandeep Mahapatra</b> - College of Engineering and Technology, Bhubaneswar, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017sandeep_mahapatra" target="_blank">Implementation of a Python Library for GraphSpace RESTful APIs</a><br />
<a href="https://summerofcode17.wordpress.com/" target="_blank">Sandeep's blog</a>
<br>Mentored by Aditya Bharadwaj</dd>
<dt>
<b>Ilkin Safarli</b> - Bilkent University, Ankara, Turkey
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017_ilkin_safarli" target="_blank">Improvements in Tool for Curating Biological Maps in SBGN</a>
<br>Mentored by Alexander Mazein</dd>
<dt>
<b>Haoran Yu</b> - University of British Columbia, Vancouver, Canada
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017haoran_yu" target="_blank">Interconversion of the SBML and SBGN Modelling Languages using Semantics of Logic</a><br />
<a href="http://haleyyew-gsoc.blogspot.ca/" target="_blank">Haoran's blog</a>
<br>Mentored by Nicolas Rodriguez</dd>
<dt>
<b>Saurabh Kumar</b> - Indian Institute of Technology Delhi, New Dehli, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017saurabh_kumar" target="_blank">libGPML library to read and write GPML files</a>
<br>Mentored by Martina Summer-Kutmon</dd>
<dt>
<b>Melvin Mathew</b> - University of Southern California, Los Angeles, CA, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016mriduls__gsoc2017melvin_mathew" target="_blank">Notification system for GraphSpace</a><br />
<a href="https://melvingsoc.blogspot.com/" target="_blank">Melvin's blog</a>
<br>Mentored by Mitch Wagner</dd>
<dt>
<b>Menghe Zhang</b> - University of California San Diego, San Diego, CA, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017menghe_zhang" target="_blank">OpenGL-accelerated Renderer for Cytoscape 3</a><br />
<a href="https://mez071.wixsite.com/2017gsoc" target="_blank">Menghe's blog</a>
<br>Mentored by Barry Demchak</dd>
<dt>
<b>Michael Wrana</b> - Royal St. George’s College, Toronto, Canada
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017mwrana" target="_blank">PiType: A Protein Interaction Prediction Cytoscape App</a>
<br>Mentored by Florian Goebels</dd>
<dt>
<b>Bhavesh Narra</b> - BITS Pilani, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017bhavesh_narra" target="_blank">Roadmap to create a WebApp for the Enrichment Map Using Cytoscape and RESTful services</a>
<br>Mentored by Augustin Luna</dd>
<dt>
<b>Jacob Windsor</b> - Maastricht University, Maastricht, Netherlands
</dt>
<dd><a href="https://github.com/nrnb/gsoc2017pathway_presenter" target="_blank">WikiPathways Pathway Presenter</a><br />
<a href="http://jcbwndsr.com/" target="_blank">Jacob's blog</a>
<br>Mentored by Egon Willighagen</dd>
</dl>
<p class="text-success">2016 (15/15 passing students, 100%) </p>
<dl>
<dt>
<b>Ashish Tiwari</b> - Arizona State University, Tempe, AZ, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016ashish" target="_blank">Cytoscape command line scripting enhancements</a>
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Julia Gustavsen</b> - University of British Columbia, Vancouver, Canada
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016joolia" target="_blank">Enhance vignettes and plugin use for R package RCy3 for network manipulation using Cytoscape</a>
<br><a href="http://blog.lunean.com/2016/08/05/extending-rcy3-vignettes-google-summer-of-code-project/">Julia's blog</a>
<br>Mentored by Augustin Luna</dd>
<dt>
<b>Zhaoyuan Zoe Xi</b> - University of California Los Angeles, Los Angeles, CA, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016zoe" target="_blank">Extending Cytoscape.js: Addition of Clustering Algorithms</a>
<br>Mentored by Mike Kucera</dd>
<dt>
<b>Roman Schulte</b> - Eberhard Karls University, Tübingen, Germany
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016roman_tramy" target="_blank">JSBML Validation System</a>
<br><a href="http://romanschulte.blogspot.de">Roman's blog</a>
<br>Mentored by Andreas Dräger</dd>
<dt>
<b>Mridul Seth</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016mriduls" target="_blank">Import graphs in multiple formats and Cytoscape files into GraphSpace</a>
<br>Mentored by TM Murali</dd>
<dt>
<b>Metin Can Siper</b> - Bilkent University, Ankara, Turkey
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016metin" target="_blank">Improving Web Based SBGN Editor SBGNViz.js</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt>
<b>Tramy Nguyen</b> - University of Utah, Salt Lake City, UT, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016roman_tramy" target="_blank">Interconversion between the systems biology modeling formats SBML and BioPAX</a>
<br><a href="http://www.async.ece.utah.edu/~tramyn/gsoc/">Tramy's blog</a>
<br>Mentored by Mike Hucka</dd>
<dt>
<b>Kaito Ii</b> - Keio University Graduate School of Science and Technology, Tokyo, Japan
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016kaito" target="_blank">Interconvertible Layout program for CellDesigner</a>
<br><a href="http://kaitoii.blogspot.jp/">Kaito's blog</a>
<br>Mentored by Akira Funahashi</dd>
<dt>
<b>Hovakim Grabski</b> - Russian Armenian University, Yerevan, Armenia
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016hovakim" target="_blank">Java support for Deviser, a code generation system for SBML libraries</a>
<br><a href="http://hgrabski.blogspot.de">Hovakim's blog</a>
<br>Mentored by Frank T. Bergmann</dd>
<dt>
<b>Ivan Bestvina</b> - University of Zagreb, Zagreb, Croatia
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016ibestvina" target="_blank">Multithread Centiscape</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt>
<b>Supun Arunoda</b> - University of Moratuwa, Galle, Sri Lanka
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016supun" target="_blank">Principal Coordinate Analysis and t-Distributed Stochastic Neighbor Embedding in clusterMaker2</a>
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Devesh Khandelwal</b> - University of Delhi, Delhi, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016devkhan" target="_blank">SBGN-ML and SBML to Escher Converter</a>
<br><a href="https://github.com/devkhan/EscherConverter/wiki">Devesh's blog</a>
<br>Mentored by Zachary A. King</dd>
<dt>
<b>William Miles</b> - McMaster University, Hamilton, Canada
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016miles" target="_blank">The Online Resource for Interface Based Interaction Networks (TOR-IBIN) Web Interface</a>
<br>Mentored by Mohamed Helmy</dd>
<dt>
<b>Joseph Stahl</b> - Vanderbuilt University, Nasville, TN, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016joseph" target="_blank">Tutorials for Cytoscape.js</a>
<br>Mentored by Max Franz</dd>
<dt>
<b>Istemi Bahceci</b> - Bilkent University, Ankara, Turkey
</dt>
<dd><a href="https://github.com/nrnb/gsoc2016istemi" target="_blank">Visualizing genomic alterations in TCGA cancer pathways in cBioPortal</a>
<br>Mentored by Uğur Doğrusöz</dd>
</dl>
<p class="text-success">2015 (3/4 passing students, 75%), <a href="http://www.nrnb.org/alumni.html#nrnb-tab">2015 NRNB Academy Summer Session</a></p>
<p class="text-success">2014 (17/18 passing students, 94%)</p>
<dl>
<dt>
<b>Abhiraj Tomar</b> - University of Southern California, Los Angeles, CA, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014abhiraj" target="_blank">Implementation of new clustering techniques into Cytoscape</a>
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Adam Shaw</b> - University of Chicago, Chicago, IL, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014adam" target="_blank">Hierarchical Models in Segway</a>
<br>Mentored by Michael Hoffman</dd>
<dt>
<b>Alex Crits-Christoph</b> - Johns Hopkins University, Baltimore, MD, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014alex" target="_blank">Developing An Interface For The Cancer Network Altering Variant Database</a>
<br>Mentored by Mohamed Helmy</dd>
<dt>
<b>Arman Aksoy</b> - Memorial Sloan-Kettering Cancer Center, New York, NY, USA
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014arman" target="_blank">Pathway Database Converters for the Expansion of Pathway Commons</a>
<br>Mentored by Augustin Luna</dd>
<dt>
<b>Truhin Alexandr</b> - Technical University of Moldova, Chisinau, Moldova
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014truhin" target="_blank">Pathvisiojs Diff Viewer</a>
<br>Mentored by Anders Riutta</dd>
<dt>
<b>Shaik Faizaan</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014shaik" target="_blank">Porting Interference App to Cytoscape 3</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt>
<b>Rohan Saxena</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014rohan2" target="_blank">PathVisio Plugin to Load Additional Information about Data Nodes</a>
<br>Mentored by Martina Kutmon</dd>
<dt>
<b>Ankit Agarwal</b> - Manipal University, Manipal, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014ankit" target="_blank">Virtual Cell iPhone App Enhancements</a>
<br>Mentored by Jim Schaff</dd>
<dt>
<b>Gerardo Huck</b> - National University of Rosario, Rosario, Argentina
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014gerardo" target="_blank">Graph Analysis Algorithms for Cytoscape.js</a>
<br>Mentored by Max Franz</dd>
<dt>
<b>Jonathan Melius</b> - University of Maastricht, Maastricht, The Netherlands
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014jonathan" target="_blank">Connect PathVisio and WikiPathways to Expression Atlas</a>
<br>Mentored by Lars Eijssen</dd>
<dt>
<b>Kirtan Dave</b> - Sardar Patel University, Vallabh Vidyanagar, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014kirtan" target="_blank">New Features for Interference App</a>
<br>Mentored by Cristian Munteanu</dd>
<dt>
<b>Lilit Nersisyan</b> - National Academy of Sciences of the Republic of Armenia, Yerevan, Armenia
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014lilit" target="_blank">PSFC: a Cytoscape app for calculating pathway signal flows</a>
<br>Mentored by Graham Johnson</dd>
<dt>
<b>Jimmy Morzaria</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014jimmy2" target="_blank">Network Analysis Enhancements</a>
<br>Mentored by Jason Montojo</dd>
<dt>
<b>Niranjan Padmanabhan</b> - McGill University, Montreal, Canada
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014niranjan" target="_blank">ADAM Variation Services and Visualizations for Cytoscape 3 Variation App</a>
<br>Mentored by Michael Heuer</dd>
<dt>
<b>Sakshi Pratap</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014sakshi" target="_blank">Porting Pesca App to Cytoscape 3 with new features</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt>
<b>Srikanth Bezawada</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2014srikanth" target="_blank">Implementing TieDIE algorithm as a Cytoscape App</a>
<br>Mentored by Evan Paull</dd>
</dl>
<p class="text-success">2013 (14/15 passing students, 94%)</p>
<dl>
<dt>
<b>Abhiraj Tomar</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013abhiraj" target="_blank">Implementation of Fuzzy Clusters in Cytoscape</a>
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Alvin Leung</b> - McGill University, Montreal, Canada
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013alvin" target="_blank">Implementing a Cytoscape 3.0 app for the HyperModules algorithm</a>
<br>Mentored by Gary Bader</dd>
<dt>
<b>Ankit Agarwal</b> - Manipal University, Manipal, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013ankit" target="_blank">iPhone application for viewing of public/private results in the Virtual Cell</a>
<br>Mentored by Jim Schaff</dd>
<dt>
<b>Christ Leemans</b> - University of Maastricht, Maastricht, The Netherlands
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013christ" target="_blank">Automated pathway-creation plugin for PathVisio</a>
<br>Mentored by Andra Waagmeester</dd>
<dt>
<b>Diego Magagna</b> - Verona University, Veneto, Italy
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013diego" target="_blank">Multiplication of nodes and directed graphs in Cytoscape 3</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt>
<b>Gerardo Huck</b> - National University of Rosario, Rosario, Argentina
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013gerardo" target="_blank">Compound Graph Layout Algorithm for Cytoscape.js</a>
<br>Mentored by Max Franz</dd>
<dt>
<b>Istemi Bahceci</b> - Bilkent University, Ankara, Turkey
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013istemi" target="_blank">Specialized Layout Algorithm for SBGN Process Description Diagrams</a>
<br>Mentored by Uğur Doğrusöz</dd>
<dt>
<b>Jimmy Morzaria</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013jimmy" target="_blank">Visualization of Dynamic Graphs in Cytoscape</a>
<br>Mentored by Jason Montojo</dd>
<dt>
<b>Li Zhang</b> - Jilin University, Changchun, China
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013li" target="_blank">Identifier Mapping App for Cytoscape 3.0</a>
<br>Mentored by Chao Zhang</dd>
<dt>
<b>Ritisha Laungani</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013ritisha" target="_blank">Modeling and Visualizing Cell Signaling Networks with SigViz</a>
<br>Mentored by Graham Johnson</dd>
<dt>
<b>Shaik Faizaan</b> - Birla Institute of Technology and Sciences, Pilani, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013faizaan" target="_blank">CentiScaPe Development and addition of extra Centrality parameter called Eigenvector Centrality</a>
<br>Mentored by Giovanni Scardoni</dd>
<dt>
<b>Sravanthi Sinha</b> - Keshav Memorial Institute of Technology, Hyderabad, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013sravanthi" target="_blank">WikiPathways client plugin for PathVisio</a>
<br>Mentored by Martina Kutmon</dd>
<dt>
<b>Sri Harsha</b> - Keshav Memorial Institute of Technology, Hyderabad, India
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013sriharsha" target="_blank">SBML Importer Plugin for PathVisio</a>
<br>Mentored by Anwesha Dutta</dd>
<dt>
<b>Truhin Alexandr</b> - Technical University of Moldova, Chisinau, Moldova
</dt>
<dd><a href="https://github.com/nrnb/gsoc2013truhin" target="_blank">Bird's eye view pan control for Cytoscape.js</a>
<br>Mentored by Christian Lopes</dd>
</dl>
<!-- Insert parsed list here -->
<p class="text-success">2012 (16/16 passing students, 100%)</p>
<dl>
<dt>
<b>Anwesha Dutta</b> - University of Maastricht, Maastricht, The
Netherlands
</dt>
<dd>Extend PathVisio with a plugin to create , modify and
visualize data on biological pathways from scripting languages
<br>Mentored by Martina Kutmon</dd>
<dt>
<b>Chao Zhang</b> - University of Missouri, Columbia, Missouri
</dt>
<dd>Ontology-based Network Visualization and Analysis
<br>Mentored by Alexander Pico</dd>
<dt>
<b>David Shih</b> - University of Toronto, Toronto, Canada
</dt>
<dd>Porting HOPACH cluster algorithm into clusterMaker
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Dazhi Jiao</b> - Indiana University, Bloomington, IN, USA
</dt>
<dd>Cytoscape Plugin for importing cancer genomic data and
drug-target interaction data from cBio Cancer Genomic Portal
<br>Mentored by Arman Aksoy</dd>
<dt>
<b>Istemi Bahceci</b> - Bilkent University, Ankara, Turkey
</dt>
<dd>SBGN-Complaint Views for Cancer Genomics Networks
<br>Mentored by Uğur Doğrusöz</dd>
<dt>
<b>Jake Fried</b> - University of Maryland, College Park, MD, USA
</dt>
<dd>Understanding Complex Pathways using User Data and Web
Services in PathVisio
<br>Mentored by Augustin Luna</dd>
<dt>
<b>Khushi Chachcha</b> - University of British Columbia, Vancouver
Canada
</dt>
<dd>GeneMANIA plugin for MedSavant
<br>Mentored by Marc Fiume</dd>
<dt>
<b>Michael Kirby</b> - University of California, San Diego, CA,
USA
</dt>
<dd>A Direct Interface Between R and Cytoscape
<br>Mentored by Mike Smoot</dd>
<dt>
<b>Neil Dhruva</b> - Birla Institute of Technology and Science,
Pilani, India
</dt>
<dd>Data summary of tables in Cytoscape
<br>Mentored by Samad Lotia</dd>
<dt>
<b>Praveen Kumar</b> - Jawaharlal Nehru Technological University,
Hyderabad, India
</dt>
<dd>Pathway Comparison in PathVisio
<br>Mentored by Martina Kutmon</dd>
<dt>
<b>Rianne Fijten</b> - University of Maastricht, Maastricht, The
Netherlands
</dt>
<dd>Plugin for metabolite information in Pathvisio
<br>Mentored by Egon Willighagen</dd>
<dt>
<b>Ritisha Laungani</b> - Birla Institute of Technology and Science,
Pilani, India
</dt>
<dd>Interactive path explorer through networks and biological
pathways for Cytoscape
<br>Mentored by Alexander Pico</dd>
<dt>
<b>Sabina Sara Pfister</b> - University of Zurich, Zurich,
Switzerland
</dt>
<dd>Loading and visualization of dynamical networks in
Cytoscape 3.0
<br>Mentored by John Brown</dd>
<dt>
<b>Sinan Sonlu</b> - Bilkent University, Ankara, Turkey
</dt>
<dd>Layout Algorithms for New Cytoscape Web
<br>Mentored by Uğur Doğrusöz</dd>
<dt>
<b>Yigang Zhou</b> - Wuhan University, Wuhan, China
</dt>
<dd>Visualizing Semantic Data Landscapes with Cytoscape 3.0
<br>Mentored by Andra Waagmeester</dd>
<dt>
<b>Yue Dong</b> - University of Toronto, Toronto, Canada
</dt>
<dd>Cytoscape App Manager, Cytoscape Web WebGL Renderer and
Layouts, Presentation API Testing
<br>Mentored by Jason Montojo</dd>
</dl>
<p class="text-success">2011 (8/10 passing students, 80%)</p>
<dl>
<dt>
<b>Chao Zhang</b> - University of Missouri, Columbia, MO, USA
</dt>
<dd>GOLayout: Network partitioning and layout driven by GO
ontology
<br>Mentored by Alexander Pico</dd>
<dt>
<b>Martina Kutmon</b> - University of Maastricht, Maastricht, The
Netherlands
</dt>
<dd>New PathVisio Plug-in Manager
<br>Mentored by Martijn van Iersel</dd>
<dt>
<b>Marek Zaluski </b> - Concordia University, Montreal, Canada
</dt>
<dd>HTML5 prototype for Cytoscape Web
<br>Mentored by Christian Lopes</dd>
<dt>
<b>Gerardo Huck</b> - National University of Rosario, Rosario,
Argentina
</dt>
<dd>Connecting Cytoscape with igraph
<br>Mentored by Gang Su</dd>
<dt>
<b>Avinash Thummala</b> - IIIT-H, Hyderabad, India
</dt>
<dd>A Cytoscape build with a fused (Annotation + Basic) editor
based on an improved CyNetworkView with Neo4j interoperability
<br>Mentored by Scooter Morris</dd>
<dt>
<b>Andrew Brook</b> - University of Toronto, Toronto, Canada
</dt>
<dd>Integrate Pathway Visualization and Analysis into Savant
<br>Mentored by Marc Fiume</dd>
<dt>
<b>Yue Dong</b> - University of Toronto, Toronto, Canada
</dt>
<dd>Cytoscape Web - HTML5 Prototype
<br>Mentored by Jason Montojo</dd>
<dt>
<b>Kumar Chandan</b> - Keshav Memorial Institute of Technology
(KMIT), Hyderabad, India
</dt>
<dd>Real-time Validation Framework for Pathvisio
<br>Mentored by Augustin Luna</dd>
</dl>
<p class="text-success">2010 (10/10 passing students, 100%)</p>
<dl>
<dt>
<b>Leontius Pradhana</b> - National University of Singapore,
Singapore, Singapore
</dt>
<dd>Reactome-Wikipathways Round-trip Format Converter
<br>Mentored by Guanming Wu</dd>
<dt>
<b>Gerardo Huck</b> - National University of Rosario, Rosario,
Argentina
</dt>
<dd>Improving Cytoscape's Labels Experience
<br>Mentored by Mike Smoot</dd>
<dt>
<b>Kozo Nishida</b> - Nara Institute of Science and Technology,
Nara, Japan
</dt>
<dd>KEGG global map browser and its integration to Processing
visualizer
<br>Mentored by Keiichiro Ono</dd>
<dt>
<b>Bing Liu</b> - National University of Singapore, Singapore,
Singapore
</dt>
<dd>Improve the PathVisio User Interface
<br>Mentored by Kristina Hanspers</dd>
<dt>
<b>Dazhi Jiao</b> - Indiana University, Bloomington, IN, USA
</dt>
<dd>Expression Data Reader plugin for Cytoscape
<br>Mentored by Alexander Pico</dd>
<dt>
<b>Anurag Sharma</b> - KIIT University, Bhubaneswar, Bhubaneswar,
India
</dt>
<dd>Perform Microarray Summarization and Alternative Splicing
Analyses By Coupling the Programs AltAnalyze and GenMAPP-CS
<br>Mentored by Nathan Salomonis</dd>
<dt>
<b>Tomithy Too</b> - National University of Singapore, Singapore,
Singapore
</dt>
<dd>Proposal for the Implementation of Edge-Weighted Force
Directed layout for Cytoscapeweb
<br>Mentored by Christian Lopes</dd>
<dt>
<b>Layla Oesper</b> - University of Wisconsin, Madison, WI, USA
</dt>
<dd>Using NLP Techniques to Create a Semantic Network Summary
for Cytoscape
<br>Mentored by Ruth Isserlin</dd>
<dt>
<b>Chetan Bansal</b> - Birla Institute of Technology and Science
Pilani, Goa, Hyderabad, India
</dt>
<dd>Exploring relations between pathways on WikiPathways