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MRIQC for LF-MRI #1146
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Hello, |
Hello @HengamehMarzbani, Regarding your second question, I need more precise information to help you. |
Hello,
Regarding the RuntimeError error for my dataset, I possessed the LF-MRI
dataset, which lacked an ISO file.
This implies that I had axial, sagittal, and coronal images for T1w.
So, MRIQC runs effectively with images that have been registered across
sagittal, axial, and coronal planes, and I do possess an ISO image (Just
one T1w image with the three views).
About the error that was reported in #1142, it may be due to running out of
disk space.
Regards
Henagmeh
…On Thu, Oct 12, 2023 at 4:20 PM celprov ***@***.***> wrote:
Hello @HengamehMarzbani <https://github.com/HengamehMarzbani>,
Could you share how you solved the error RuntimeError: Input
inhomogeneity-corrected data seem empty? MRIQC failed to process this
dataset. ?
The same error was reported in #1142
<#1142>
Regarding your second question, I would interpret the absence of .json
files as a sign that MRIQC did not successfully run until the end, but I
need more precise information to help you out more on this.
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This is to say that you had 3 planes (e.g., like a localizer or what DL people call 2.5D) or that you had the three possible readout directions? |
What happened?
Hello,
I want to use MRIQC for low-field MRI data (T1W and T2W) that has been BIDS-ified. I am encountering this error. Would you please guide me on how to fix it?
What command did you use?
What version of the software are you running?
mriqc 23.1.0
How are you running this software?
Singularity
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Additional information / screenshots
No response
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