AnFileNotFoundError: /tmp/work/mriqc_wf/.... error

[mohamadhase]

What happened?

I am trying to run the mriqc on a BIDs data, I got the following error - it seems the mriqc cant find the nii fils however I made sure several times that the files are organised as required.

FileNotFoundError: /tmp/work/mriqc_wf/anatMRIQC/ComputeIQMs/in_file..data..sub-02..anat..sub-02_T1w.nii.gz/metadata/result_metadata.pklz

Also tried several version of mriqc but it doest work, then its not a version issue.

What command did you use?

docker run -it --rm -v /Users/username/ds003826:/data:ro -v /Users/username/ds003826/output:/out nipreps/mriqc:22.0.6 /data /out participant --participant_label sub-02

What version of the software are you running?

latest

How are you running this software?

Docker

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

Anatomical derivatives

Please copy and paste any relevant log output.

Traceback (most recent call last):
  File "/opt/conda/lib/python3.9/concurrent/futures/_base.py", line 330, in _invoke_callbacks
    callback(self)
  File "/opt/conda/lib/python3.9/site-packages/mriqc/engine/plugin.py", line 451, in _async_callback
    result = args.result()
  File "/opt/conda/lib/python3.9/concurrent/futures/_base.py", line 439, in result
    return self.__get_result()
  File "/opt/conda/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
    raise self._exception
FileNotFoundError: /tmp/work/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..data..sub-02..anat..sub-02_T1w.nii.gz/metadata/result_metadata.pklz

Additional information / screenshots

No response