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ERROR: Label BA1_exvivo does not exist in SUBJECTS_DIR fsaverage! The fsaverage link probably points to an older freesurfer version #3258
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So the issue is that in your |
I just got the same error with 23.2.1. I used empty output and working directories, so I don't think there's an old fsaverage copy in |
Is it possible there's a race and two processes are creating the |
I'm running fMRIPrep with a job array (one job for each of 8 subjects), but that's all that's writing to the |
Adding @WangYunHong98 did clearing out the working and output directories fix the problem for you? |
Hi @tsalo I cleaned out all directories and added |
Hi @effigies Is there a possibility that if I first submit the fmriprep job for dataset 1 in slurm, and at the same time I submit another freesurfer job in terminal (no it's with slurm), setting the environment variable Best, |
If you're submitting FreeSurfer and fMRIPrep jobs that both use the same subject directory, yes, I would expect conflicts. |
What happened?
I am running fmriprep-23.2.1 with singularity on Slurm and am getting the error described in the title. This error occurs for most subjects. What should I do about it?
What command did you use?
What version of fMRIPrep are you running?
23.2.1
How are you running fMRIPrep?
Singularity
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Additional information / screenshots
No response
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