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Add host information to dataset description #3196

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effigies opened this issue Jan 8, 2024 · 0 comments
Open

Add host information to dataset description #3196

effigies opened this issue Jan 8, 2024 · 0 comments
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@effigies
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effigies commented Jan 8, 2024

What would you like to see added in fMRIPrep?

Tedana writes out additional provenance information in the dataset_description.json:

{
    "BIDSVersion": "1.5.0",
    "DatasetType": "derivative",
    "GeneratedBy": [
        {
            "CodeURL": "https://github.com/ME-ICA/tedana",
            "Command": "tedana -d p05.SBJ01_S09_Task11_e1.in.nii.gz p05.SBJ01_S09_Task11_e2.in.nii.gz p05.SBJ01_S09_Task11_e3.in.nii.gz p05.SBJ01_S09_Task11_e4.in.nii.gz p05.SBJ01_S09_Task11_e5.in.nii.gz -e 15.4 29.7 44.0 58.3 72.6 --out-dir=tedana_out/RobustICA_c80_iter100_minimal --ica_method robustica --n_robust_runs 100 --tedpca=80 --tree minimal",
            "Description": "A denoising pipeline for the identification and removal of non-BOLD noise from multi-echo fMRI data.",
            "Name": "tedana",
            "Node": {
                "Machine": "arm64",
                "Name": "x.local",
                "Processor": "arm",
                "Release": "22.6.0",
                "System": "Darwin",
                "Version": "Darwin Kernel Version 22.6.0: Tue Nov  7 21:40:08 PST 2023; root:xnu-8796.141.3.702.9~2/RELEASE_ARM64_T6000"
            },
            "Python": "3.12.0 | packaged by Anaconda, Inc. | (main, Oct  2 2023, 12:22:05) [Clang 14.0.6 ]",
            "Version": "23.0.3.dev13+gcc5e05d"
        }
    ],
    "Name": "tedana Outputs"
}

Implemented here:

Could be worth including more information than we currently do.

HT @handwerkerd who posted about this on mattermost.

Do you have any interest in helping implement the feature?

Yes

Additional information / screenshots

No response

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