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The workflow still runs successfully until the end, but this error is reported.
DATADIR="/oak/stanford/groups/russpold/inprocess/cprovins/hcph-dataset/" DERIVATIVEDIR="/oak/stanford/groups/russpold/inprocess/cprovins/hcph-derivatives" CODEDIR="/oak/stanford/groups/russpold/inprocess/cprovins/code" SUB="sub-001" STUDY=`basename $DATADIR` IMG="/oak/stanford/groups/russpold/users/cprovins/singularity_images/fmriprep-23.2.0a2.simg" WORKDIR="${L_SCRATCH}/fmriprep-23.2.0a2/${STUDY}/" OUTDIR="${DERIVATIVEDIR}" singularity run -e -B $DATADIR:/data:ro \ -B ${WORKDIR}:/work \ -B ${OUTDIR}:/out \ -B $CODEDIR/license.txt:/opt/freesurfer/license.txt \ -B $CODEDIR/filter_file_undistorted.json:/filter_file_undistorted.json \ /data /out/fmriprep-23.2.0a2 participant \ -w /work --bids-filter-file /filter_file_undistorted.json --anat-only --skip_bids_validation \ --nprocs 4 --mem 45G --omp-nthreads 16 \ -vv
23.2.0a2
Singularity
Yes
No
Could not generate CITATION.html file: pandoc -s --bibliography /out/fmriprep-23.2.0a2/logs/CITATION.bib --citeproc --metadata pagetitle="fMRIPrep citation boilerplate" /out/fmriprep-23.2.0a2/logs/CITATION.md -o /out/fmriprep-23.2.0a2/logs/CITATION.html
No response
The text was updated successfully, but these errors were encountered:
No branches or pull requests
What happened?
The workflow still runs successfully until the end, but this error is reported.
What command did you use?
What version of fMRIPrep are you running?
23.2.0a2
How are you running fMRIPrep?
Singularity
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Could not generate CITATION.html file: pandoc -s --bibliography /out/fmriprep-23.2.0a2/logs/CITATION.bib --citeproc --metadata pagetitle="fMRIPrep citation boilerplate" /out/fmriprep-23.2.0a2/logs/CITATION.md -o /out/fmriprep-23.2.0a2/logs/CITATION.html
Additional information / screenshots
No response
The text was updated successfully, but these errors were encountered: