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pyproject.toml
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pyproject.toml
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[build-system]
build-backend = "hatchling.build"
requires = ["hatchling", "hatch-vcs"]
[project]
authors = [{name = "Nilearn developers"}]
classifiers = [
"Intended Audience :: Science/Research",
"Intended Audience :: Developers",
"License :: OSI Approved",
"Programming Language :: C",
"Programming Language :: Python",
"Topic :: Software Development",
"Topic :: Scientific/Engineering",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX",
"Operating System :: Unix",
"Operating System :: MacOS",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12"
]
dependencies = [
"joblib>=1.0.0",
"lxml",
"nibabel>=4.0.0",
"numpy>=1.19.0",
"pandas>=1.1.5",
"requests>=2.25.0",
"scikit-learn>=1.0.0",
"scipy>=1.8.0",
"packaging"
]
description = "Statistical learning for neuroimaging in Python"
# Version from setuptools_scm
dynamic = ["version"]
license = {text = "new BSD"}
maintainers = [{name = "Bertrand Thirion", email = "bertrand.thirion@inria.fr"}]
name = "nilearn"
readme = "README.rst"
requires-python = ">=3.8"
[project.optional-dependencies]
# A combination of dependencies useful for developers
dev = [
"nilearn[plotting,doc,style,test]",
'pre-commit',
'tox'
]
# Requirements necessary for building the documentation
doc = [
"nilearn[plotting]",
"furo",
"memory_profiler", # measuring memory during docs building
"myst-parser",
"numpydoc",
"ruamel.yaml",
"sphinx",
"sphinx-copybutton",
"sphinx-design",
"sphinx-gallery",
"sphinxcontrib-bibtex",
"sphinxext-opengraph"
]
# the following is kept for "backward compatibility"
plotly = ["nilearn[plotting]"]
# Necessary req to use nilearn's plotting module
# Kaleido version is pinned for windows due to bug
# See https://github.com/plotly/Kaleido/issues/134 for more detail
plotting = [
"matplotlib>=3.3.0",
"plotly",
"kaleido ; platform_system != 'Windows'",
"kaleido==0.1.0.post1 ; platform_system == 'Windows'"
]
style = [
"black",
"blacken-docs",
'codespell',
"isort",
"flake8",
"flake8-docstrings",
"flake8-use-fstring",
"flake8-functions",
"flynt",
'tomli'
]
# For running unit and docstring tests
test = [
"coverage",
"pytest>=6.0.0",
"pytest-cov"
]
[project.urls]
Changelog = "https://nilearn.github.io/stable/changes/whats_new.html"
Development = "https://github.com/nilearn/nilearn"
Discussions = "https://neurostars.org/tag/nilearn"
Homepage = "https://nilearn.github.io"
[tool.black]
# 'extend-exclude' excludes files or directories in addition to the defaults
extend-exclude = """
(
nilearn/externals
| nilearn/_utils/helpers.py
| examples/01_plotting/plot_3d_map_to_surface_projection.py
| examples/01_plotting/plot_surf_atlas.py
| examples/01_plotting/plot_surf_stat_map.py
| examples/01_plotting/plot_surface_projection_strategies.py
| examples/04_glm_first_level/plot_localizer_surface_analysis.py
| examples/07_advanced/plot_surface_bids_analysis.py
| nilearn/plotting/html_surface.py
| nilearn/plotting/js_plotting_utils.py
| nilearn/plotting/surf_plotting.py
| nilearn/plotting/tests/test_html_surface.py
| nilearn/plotting/tests/test_surf_plotting.py
| nilearn/surface/surface.py
| nilearn/surface/tests/test_surface.py
)
"""
line-length = 79
[tool.codespell]
ignore-words = ".github/codespell_ignore_words.txt"
skip = "./.git,plotly-gl3d-latest.min.js,jquery.min.js,localizer_behavioural.tsv,.mypy_cache,env,venv,./doc/auto_examples,*/tmp,./doc/modules/generated/*,./doc/_build"
[tool.flynt]
exclude = "tempita"
[tool.hatch.build.hooks.vcs]
version-file = "nilearn/_version.py"
[tool.hatch.build.targets.wheel]
packages = ["nilearn"]
[tool.hatch.version]
source = "vcs"
[tool.isort]
combine_as_imports = true
line_length = 79
profile = "black"
skip_gitignore = true
skip_glob = [
"nilearn/externals/*",
"doc/auto_examples/*"
]
src_paths = [
'maint_tools',
'nilearn',
'doc'
]
[tool.pytest.ini_options]
addopts = "-ra --strict-config --strict-markers --doctest-modules --showlocals -s -vv --durations=0"
doctest_optionflags = "NORMALIZE_WHITESPACE ELLIPSIS"
junit_family = "xunit2"
minversion = "6.0"
xfail_strict = true