Nighres is a Python package for processing of high-resolution neuroimaging data. It developed out of CBS High-Res Brain Processing Tools and aims to make those tools easier to install, use and extend. Nighres now includes new functions from the IMCN imaging toolkit and additional packages may be added in future releases.
Because parts of the package have to be built locally it is currently not possible to use pip install directly from PyPI. Instead, please follow the installation instructions provided at http://nighres.readthedocs.io/en/latest/installation.html
Currently, Nighres is developed and tested on Linux Ubuntu Trusty and Python 3.5. Release versions have been extensively tested on our example data. Development versions include additional modules and functions but with limited guarantees.
In order to run Nighres, you will need:
- python >= 3.8
- Java JDK >= 1.7
- JCC >= 3.0
For more information on how to install Nighres or use its docker version, please see the installation page of the documentation.
If you use nighres, please reference the publication:
Huntenburg JM, Steele CJ, Bazin P-L (2018) Nighres: processing tools for high-resolution neuroimaging. Gigascience 7 Available at: https://academic.oup.com/gigascience/article/7/7/giy082/5049008