nf-core/viralrecon run halted due to R version clash

[asanenjoy]

Hello! My nf-core/viralrecon run was halted due to R version clash. Please see the error message below -

ERROR ~ Error executing process > 'NFCORE_VIRALRECON:ILLUMINA:PLOT_MOSDEPTH_REGIONS_AMPLICON'

Caused by:
Process NFCORE_VIRALRECON:ILLUMINA:PLOT_MOSDEPTH_REGIONS_AMPLICON terminated with an error exit status (1)

Command executed:

plot_mosdepth_regions.r
--input_files cGMPSARS-CoV-2.regions.bed.gz
--output_dir ./
--output_suffix mosdepth
--input_suffix .regions.bed.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_VIRALRECON:ILLUMINA:PLOT_MOSDEPTH_REGIONS_AMPLICON":
r-base:
(R --version 2>&1) | sed 's/^.R version //; s/ .$//')
END_VERSIONS

Command exit status:
1

Command output:
(empty)

Command error:
Warning message:
package ‘optparse’ was built under R version 4.0.5
Warning message:
package ‘scales’ was built under R version 4.0.5
Loading required package: grid
Error: package or namespace load failed for ‘ComplexHeatmap’:
.onLoad failed in loadNamespace() for 'Cairo', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/root/work/conda/env-05a634cd6ec064941b9d92badb58aa6c/lib/R/library/Cairo/libs/Cairo.so':
libicuuc.so.70: cannot open shared object file: No such file or directory
Execution halted

Have updated my r-base in conda-forge, which is 4.3.3 instead of 4.0.5. Attempted with the following command -

conda install -c conda-forge r-base=4.0.5

That didn't work though... Not quite sure how I can fix this.

Any input would be much appreciated! Thank you!

[svarona]

@asanenjoy could you provide us the command you used to run viralrecon and the .nextflow.log file?