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During full sized tests using aligner universc, the UNIVERSC process failed with "Essential container in task exited". Unfortunately the logs for the process are empty.
adamrtalbot
changed the title
Universc "essential container in task exited" on full sized tests
Universc "essential container in task exited"
Jun 2, 2023
The log file is added to _log in the working directory:
script running in /universc/launch_universc.sh...
SOURCE '/universc/universc' is an absolute symlink to '/universc/launch_universc.sh'
... script called from /universc
Running launch_universc.sh in '/universc'
UniverSC Copyright (C) 2019 Tom Kelly; Kai Battenberg
This program comes with ABSOLUTELY NO WARRANTY; for details type 'cat LICENSE'. This is free software, and you are welcome to redistribute it under certain conditions; type 'cat LICENSE' for details.
Cell Ranger is called as third-party dependency and is not maintained by this project. Please ensure you comply with the End User License Agreement for all software installed where applicable; for details type 'cat README.md'.
Error: option -t needs to be a technology listed or custom_<barcode>_<UMI>
Description of the bug
During full sized tests using aligner universc, the
UNIVERSC
process failed with "Essential container in task exited". Unfortunately the logs for the process are empty.Tower run: https://tower.nf/orgs/nf-core/workspaces/AWSmegatests/watch/PEq66ZO67hldJ
Command used and terminal output
Relevant files
nf-1dwmFGI1UUZphr.txt
nf-1dwmFGI1UUZphr.log
System information
scrnaseq version: 2.3.1 (#6cccb9d37afa873b6799cd09f8589b5b129c8ac1)
Nextflow: 23.04.1 build 5866
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