pytest_modules.yml

adapterremovalfixprefix:
  - modules/nf-core/adapterremovalfixprefix/**
  - tests/modules/nf-core/adapterremovalfixprefix/**
affy/justrma:
  - modules/nf-core/affy/justrma/**
  - tests/modules/nf-core/affy/justrma/**
amps:
  - modules/nf-core/amps/**
  - tests/modules/nf-core/amps/**
angsd/contamination:
  - modules/nf-core/angsd/contamination/**
  - tests/modules/nf-core/angsd/contamination/**
angsd/docounts:
  - modules/nf-core/angsd/docounts/**
  - tests/modules/nf-core/angsd/docounts/**
annotsv/installannotations:
  - modules/nf-core/annotsv/installannotations/**
  - tests/modules/nf-core/annotsv/installannotations/**
arcashla/extract:
  - modules/nf-core/arcashla/extract/**
  - tests/modules/nf-core/arcashla/extract/**
ariba/getref:
  - modules/nf-core/ariba/getref/**
  - tests/modules/nf-core/ariba/getref/**
arriba/arriba:
  - modules/nf-core/arriba/arriba/**
  - tests/modules/nf-core/arriba/arriba/**
arriba/download:
  - modules/nf-core/arriba/download/**
  - tests/modules/nf-core/arriba/download/**
artic/guppyplex:
  - modules/nf-core/artic/guppyplex/**
  - tests/modules/nf-core/artic/guppyplex/**
artic/minion:
  - modules/nf-core/artic/minion/**
  - tests/modules/nf-core/artic/minion/**
ascat:
  - modules/nf-core/ascat/**
  - tests/modules/nf-core/ascat/**
ashlar:
  - modules/nf-core/ashlar/**
  - tests/modules/nf-core/ashlar/**
ataqv/ataqv:
  - modules/nf-core/ataqv/ataqv/**
  - tests/modules/nf-core/ataqv/ataqv/**
ataqv/mkarv:
  - modules/nf-core/ataqv/mkarv/**
  - tests/modules/nf-core/ataqv/mkarv/**
atlas/call:
  - modules/nf-core/atlas/call/**
  - tests/modules/nf-core/atlas/call/**
atlas/pmd:
  - modules/nf-core/atlas/pmd/**
  - tests/modules/nf-core/atlas/pmd/**
atlas/recal:
  - modules/nf-core/atlas/recal/**
  - tests/modules/nf-core/atlas/recal/**
atlas/splitmerge:
  - modules/nf-core/atlas/splitmerge/**
  - tests/modules/nf-core/atlas/splitmerge/**
authentict/deam2cont:
  - modules/nf-core/authentict/deam2cont/**
  - tests/modules/nf-core/authentict/deam2cont/**
bam2fastx/bam2fastq:
  - modules/nf-core/bam2fastx/bam2fastq/**
  - tests/modules/nf-core/bam2fastx/bam2fastq/**
bamaligncleaner:
  - modules/nf-core/bamaligncleaner/**
  - tests/modules/nf-core/bamaligncleaner/**
bamtools/convert:
  - modules/nf-core/bamtools/convert/**
  - tests/modules/nf-core/bamtools/convert/**
bamtools/split:
  - modules/nf-core/bamtools/split/**
  - tests/modules/nf-core/bamtools/split/**
bamtools/stats:
  - modules/nf-core/bamtools/stats/**
  - tests/modules/nf-core/bamtools/stats/**
bamutil/trimbam:
  - modules/nf-core/bamutil/trimbam/**
  - tests/modules/nf-core/bamutil/trimbam/**
bandage/image:
  - modules/nf-core/bandage/image/**
  - tests/modules/nf-core/bandage/image/**
barrnap:
  - modules/nf-core/barrnap/**
  - tests/modules/nf-core/barrnap/**
basicpy:
  - modules/nf-core/basicpy/**
  - tests/modules/nf-core/basicpy/**
bbmap/align:
  - modules/nf-core/bbmap/align/**
  - tests/modules/nf-core/bbmap/align/**
bbmap/bbduk:
  - modules/nf-core/bbmap/bbduk/**
  - tests/modules/nf-core/bbmap/bbduk/**
bbmap/bbnorm:
  - modules/nf-core/bbmap/bbnorm/**
  - tests/modules/nf-core/bbmap/bbnorm/**
bbmap/clumpify:
  - modules/nf-core/bbmap/clumpify/**
  - tests/modules/nf-core/bbmap/clumpify/**
bbmap/index:
  - modules/nf-core/bbmap/index/**
  - tests/modules/nf-core/bbmap/index/**
bbmap/pileup:
  - modules/nf-core/bbmap/pileup/**
  - tests/modules/nf-core/bbmap/pileup/**
bbmap/sendsketch:
  - modules/nf-core/bbmap/sendsketch/**
  - tests/modules/nf-core/bbmap/sendsketch/**
bcftools/consensus:
  - modules/nf-core/bcftools/consensus/**
  - tests/modules/nf-core/bcftools/consensus/**
bcftools/convert:
  - modules/nf-core/bcftools/convert/**
  - tests/modules/nf-core/bcftools/convert/**
bcftools/index:
  - modules/nf-core/bcftools/index/**
  - tests/modules/nf-core/bcftools/index**
bcftools/merge:
  - modules/nf-core/bcftools/merge/**
  - tests/modules/nf-core/bcftools/merge/**
bcftools/norm:
  - modules/nf-core/bcftools/norm/**
  - tests/modules/nf-core/bcftools/norm/**
bcftools/pluginscatter:
  - modules/nf-core/bcftools/pluginscatter/**
  - tests/modules/nf-core/bcftools/pluginscatter/**
bcftools/pluginsplit:
  - modules/nf-core/bcftools/pluginsplit/**
  - tests/modules/nf-core/bcftools/pluginsplit/**
bcftools/roh:
  - modules/nf-core/bcftools/roh/**
  - tests/modules/nf-core/bcftools/roh/**
bcftools/split:
  - modules/nf-core/bcftools/split/**
  - tests/modules/nf-core/bcftools/split/**
beagle5/beagle:
  - modules/nf-core/beagle5/beagle/**
  - tests/modules/nf-core/beagle5/beagle/**
bedtools/groupby:
  - modules/nf-core/bedtools/groupby/**
  - tests/modules/nf-core/bedtools/groupby/**
bedtools/intersect:
  - modules/nf-core/bedtools/intersect/**
  - tests/modules/nf-core/bedtools/intersect/**
bedtools/jaccard:
  - modules/nf-core/bedtools/jaccard/**
  - tests/modules/nf-core/bedtools/jaccard/**
bedtools/makewindows:
  - modules/nf-core/bedtools/makewindows/**
  - tests/modules/nf-core/bedtools/makewindows/**
bedtools/maskfasta:
  - modules/nf-core/bedtools/maskfasta/**
  - tests/modules/nf-core/bedtools/maskfasta/**
bedtools/multiinter:
  - modules/nf-core/bedtools/multiinter/**
  - tests/modules/nf-core/bedtools/multiinter/**
bedtools/shift:
  - modules/nf-core/bedtools/shift/**
  - tests/modules/nf-core/bedtools/shift/**
bedtools/slop:
  - modules/nf-core/bedtools/slop/**
  - tests/modules/nf-core/bedtools/slop/**
bedtools/split:
  - modules/nf-core/bedtools/split/**
  - tests/modules/nf-core/bedtools/split/**
bedtools/subtract:
  - modules/nf-core/bedtools/subtract/**
  - tests/modules/nf-core/bedtools/subtract/**
bedtools/unionbedg:
  - modules/nf-core/bedtools/unionbedg/**
  - tests/modules/nf-core/bedtools/unionbedg/**
bioawk:
  - modules/nf-core/bioawk/**
  - tests/modules/nf-core/bioawk/**
biobambam/bammarkduplicates2:
  - modules/nf-core/biobambam/bammarkduplicates2/**
  - tests/modules/nf-core/biobambam/bammarkduplicates2/**
biobambam/bammerge:
  - modules/nf-core/biobambam/bammerge/**
  - tests/modules/nf-core/biobambam/bammerge/**
biobambam/bamsormadup:
  - modules/nf-core/biobambam/bamsormadup/**
  - tests/modules/nf-core/biobambam/bamsormadup/**
biohansel:
  - modules/nf-core/biohansel/**
  - tests/modules/nf-core/biohansel/**
biscuit/align:
  - modules/nf-core/biscuit/index/**
  - modules/nf-core/biscuit/align/**
  - tests/modules/nf-core/biscuit/align/**
biscuit/biscuitblaster:
  - modules/nf-core/biscuit/index/**
  - modules/nf-core/biscuit/biscuitblaster/**
  - tests/modules/nf-core/biscuit/biscuitblaster/**
biscuit/epiread:
  - modules/nf-core/biscuit/index/**
  - modules/nf-core/biscuit/epiread/**
  - tests/modules/nf-core/biscuit/epiread/**
biscuit/index:
  - modules/nf-core/biscuit/index/**
  - tests/modules/nf-core/biscuit/index/**
biscuit/mergecg:
  - modules/nf-core/biscuit/index/**
  - modules/nf-core/biscuit/mergecg/**
  - tests/modules/nf-core/biscuit/mergecg/**
biscuit/pileup:
  - modules/nf-core/biscuit/index/**
  - modules/nf-core/biscuit/pileup/**
  - tests/modules/nf-core/biscuit/pileup/**
biscuit/qc:
  - modules/nf-core/biscuit/index/**
  - modules/nf-core/biscuit/qc/**
  - tests/modules/nf-core/biscuit/qc/**
biscuit/vcf2bed:
  - modules/nf-core/biscuit/vcf2bed/**
  - tests/modules/nf-core/biscuit/vcf2bed/**
blat:
  - modules/nf-core/blat/**
  - tests/modules/nf-core/blat/**
bowtie/align:
  - modules/nf-core/bowtie/align/**
  - modules/nf-core/bowtie/build/**
  - tests/modules/nf-core/bowtie/align/**
bowtie/build:
  - modules/nf-core/bowtie/build/**
  - tests/modules/nf-core/bowtie/build_test/**
busco:
  - modules/nf-core/busco/**
  - tests/modules/nf-core/busco/**
bwameth/align:
  - modules/nf-core/bwameth/align/**
  - tests/modules/nf-core/bwameth/align/**
bwameth/index:
  - modules/nf-core/bwameth/index/**
  - tests/modules/nf-core/bwameth/index/**
cadd:
  - modules/nf-core/cadd/**
  - tests/modules/nf-core/cadd/**
calder2:
  - modules/nf-core/calder2/**
  - tests/modules/nf-core/calder2/**
canu:
  - modules/nf-core/canu/**
  - tests/modules/nf-core/canu/**
cdhit/cdhitest:
  - modules/nf-core/cdhit/cdhitest/**
  - tests/modules/nf-core/cdhit/cdhitest/**
cellrangerarc/count:
  - modules/nf-core/cellrangerarc/count/**
  - tests/modules/nf-core/cellrangerarc/count/**
  - modules/nf-core/cellrangerarc/mkref/**
  - tests/modules/nf-core/cellrangerarc/mkref/**
cellrangerarc/mkfastq:
  - modules/nf-core/cellrangerarc/mkfastq/**
  - tests/modules/nf-core/cellrangerarc/mkfastq/**
cellrangerarc/mkgtf:
  - modules/nf-core/cellrangerarc/mkgtf/**
  - tests/modules/nf-core/cellrangerarc/mkgtf/**
cellrangerarc/mkref:
  - modules/nf-core/cellrangerarc/mkref/**
  - tests/modules/nf-core/cellrangerarc/mkref/**
  - modules/nf-core/cellrangerarc/mkgtf/**
  - tests/modules/nf-core/cellrangerarc/mkgtf/**
cellrangeratac/count:
  - modules/nf-core/cellrangeratac/count/**
  - tests/modules/nf-core/cellrangeratac/count/**
  - modules/nf-core/cellrangeratac/mkref/**
  - tests/modules/nf-core/cellrangeratac/mkref/**
cellrangeratac/mkfastq:
  - modules/nf-core/cellrangeratac/mkfastq/**
  - tests/modules/nf-core/cellrangeratac/mkfastq/**
cellrangeratac/mkref:
  - modules/nf-core/cellrangeratac/mkref/**
  - tests/modules/nf-core/cellrangeratac/mkref/**
checkm/lineagewf:
  - modules/nf-core/checkm/lineagewf/**
  - tests/modules/nf-core/checkm/lineagewf/**
checkm/qa:
  - modules/nf-core/checkm/qa/**
  - tests/modules/nf-core/checkm/qa/**
chromap/chromap:
  - modules/nf-core/chromap/chromap/**
  - tests/modules/nf-core/chromap/chromap/**
chromap/index:
  - modules/nf-core/chromap/index/**
  - tests/modules/nf-core/chromap/index/**
circexplorer2/annotate:
  - modules/nf-core/circexplorer2/annotate/**
  - tests/modules/nf-core/circexplorer2/annotate/**
circexplorer2/parse:
  - modules/nf-core/circexplorer2/parse/**
  - tests/modules/nf-core/circexplorer2/parse/**
clippy:
  - modules/nf-core/clippy/**
  - tests/modules/nf-core/clippy/**
clonalframeml:
  - modules/nf-core/clonalframeml/**
  - tests/modules/nf-core/clonalframeml/**
cmseq/polymut:
  - modules/nf-core/cmseq/polymut/**
  - tests/modules/nf-core/cmseq/polymut/**
cnvkit/access:
  - modules/nf-core/cnvkit/access/**
  - tests/modules/nf-core/cnvkit/access/**
cnvkit/antitarget:
  - modules/nf-core/cnvkit/antitarget/**
  - tests/modules/nf-core/cnvkit/antitarget/**
cnvkit/call:
  - modules/nf-core/cnvkit/call/**
  - tests/modules/nf-core/cnvkit/call/**
cnvkit/export:
  - modules/nf-core/cnvkit/export/**
  - tests/modules/nf-core/cnvkit/export/**
cnvkit/genemetrics:
  - modules/nf-core/cnvkit/genemetrics/**
  - tests/modules/nf-core/cnvkit/genemetrics/**
cnvkit/reference:
  - modules/nf-core/cnvkit/reference/**
  - tests/modules/nf-core/cnvkit/reference/**
cnvkit/target:
  - modules/nf-core/cnvkit/target/**
  - tests/modules/nf-core/cnvkit/target/**
cnvnator/cnvnator:
  - modules/nf-core/cnvnator/cnvnator/**
  - tests/modules/nf-core/cnvnator/cnvnator/**
cnvnator/convert2vcf:
  - modules/nf-core/cnvnator/convert2vcf/**
  - tests/modules/nf-core/cnvnator/convert2vcf/**
concoct/concoct:
  - modules/nf-core/concoct/concoct/**
  - tests/modules/nf-core/concoct/concoct/**
concoct/concoctcoveragetable:
  - modules/nf-core/concoct/concoctcoveragetable/**
  - tests/modules/nf-core/concoct/concoctcoveragetable/**
concoct/cutupfasta:
  - modules/nf-core/concoct/cutupfasta/**
  - tests/modules/nf-core/concoct/cutupfasta/**
concoct/extractfastabins:
  - modules/nf-core/concoct/extractfastabins/**
  - tests/modules/nf-core/concoct/extractfastabins/**
concoct/mergecutupclustering:
  - modules/nf-core/concoct/mergecutupclustering/**
  - tests/modules/nf-core/concoct/mergecutupclustering/**
conifer:
  - modules/nf-core/conifer/**
  - tests/modules/nf-core/conifer/**
cooler/balance:
  - modules/nf-core/cooler/balance/**
  - tests/modules/nf-core/cooler/balance/**
cooler/cload:
  - modules/nf-core/cooler/cload/**
  - tests/modules/nf-core/cooler/cload/**
cooler/digest:
  - modules/nf-core/cooler/digest/**
  - tests/modules/nf-core/cooler/digest/**
cooler/dump:
  - modules/nf-core/cooler/dump/**
  - tests/modules/nf-core/cooler/dump/**
cooler/makebins:
  - modules/nf-core/cooler/makebins/**
  - tests/modules/nf-core/cooler/makebins/**
cooler/merge:
  - modules/nf-core/cooler/merge/**
  - tests/modules/nf-core/cooler/merge/**
cooler/zoomify:
  - modules/nf-core/cooler/zoomify/**
  - tests/modules/nf-core/cooler/zoomify/**
coreograph:
  - modules/nf-core/coreograph/**
  - tests/modules/nf-core/coreograph/**
crisprcleanr/normalize:
  - modules/nf-core/crisprcleanr/normalize/**
  - tests/modules/nf-core/crisprcleanr/normalize/**
crumble:
  - modules/nf-core/crumble/**
  - tests/modules/nf-core/crumble/**
csvtk/concat:
  - modules/nf-core/csvtk/concat/**
  - tests/modules/nf-core/csvtk/concat/**
csvtk/join:
  - modules/nf-core/csvtk/join/**
  - tests/modules/nf-core/csvtk/join/**
csvtk/split:
  - modules/nf-core/csvtk/split/**
  - tests/modules/nf-core/csvtk/split/**
custom/matrixfilter:
  - modules/nf-core/custom/matrixfilter/**
  - tests/modules/nf-core/custom/matrixfilter/**
custom/tabulartogseacls:
  - modules/nf-core/custom/tabulartogseacls/**
  - tests/modules/nf-core/custom/tabulartogseacls/**
custom/tabulartogseagct:
  - modules/nf-core/custom/tabulartogseagct/**
  - tests/modules/nf-core/custom/tabulartogseagct/**
cutesv:
  - modules/nf-core/cutesv/**
  - tests/modules/nf-core/cutesv/**
damageprofiler:
  - modules/nf-core/damageprofiler/**
  - tests/modules/nf-core/damageprofiler/**
dastool/dastool:
  - modules/nf-core/dastool/dastool/**
  - tests/modules/nf-core/dastool/dastool/**
dastool/fastatocontig2bin:
  - modules/nf-core/dastool/fastatocontig2bin/**
  - tests/modules/nf-core/dastool/fastatocontig2bin/**
dastool/scaffolds2bin:
  - modules/nf-core/dastool/scaffolds2bin/**
  - tests/modules/nf-core/dastool/scaffolds2bin/**
dedup:
  - modules/nf-core/dedup/**
  - tests/modules/nf-core/dedup/**
deeptmhmm:
  - modules/nf-core/deeptmhmm/**
  - tests/modules/nf-core/deeptmhmm/**
deeptools/bamcoverage:
  - modules/nf-core/deeptools/bamcoverage/**
  - tests/modules/nf-core/deeptools/bamcoverage/**
deeptools/computematrix:
  - modules/nf-core/deeptools/computematrix/**
  - tests/modules/nf-core/deeptools/computematrix/**
deeptools/multibamsummary:
  - modules/nf-core/deeptools/multibamsummary/**
  - tests/modules/nf-core/deeptools/multibamsummary/**
deeptools/plotcorrelation:
  - modules/nf-core/deeptools/plotcorrelation/**
  - tests/modules/nf-core/deeptools/plotcorrelation/**
deeptools/plotfingerprint:
  - modules/nf-core/deeptools/plotfingerprint/**
  - tests/modules/nf-core/deeptools/plotfingerprint/**
deeptools/plotheatmap:
  - modules/nf-core/deeptools/plotheatmap/**
  - tests/modules/nf-core/deeptools/plotheatmap/**
deeptools/plotpca:
  - modules/nf-core/deeptools/plotpca/**
  - tests/modules/nf-core/deeptools/plotpca/**
deeptools/plotprofile:
  - modules/nf-core/deeptools/plotprofile/**
  - tests/modules/nf-core/deeptools/plotprofile/**
dshbio/exportsegments:
  - modules/nf-core/dshbio/exportsegments/**
  - tests/modules/nf-core/dshbio/exportsegments/**
dshbio/filterbed:
  - modules/nf-core/dshbio/filterbed/**
  - tests/modules/nf-core/dshbio/filterbed/**
dshbio/filtergff3:
  - modules/nf-core/dshbio/filtergff3/**
  - tests/modules/nf-core/dshbio/filtergff3/**
dshbio/splitbed:
  - modules/nf-core/dshbio/splitbed/**
  - tests/modules/nf-core/dshbio/splitbed/**
dshbio/splitgff3:
  - modules/nf-core/dshbio/splitgff3/**
  - tests/modules/nf-core/dshbio/splitgff3/**
duphold:
  - modules/nf-core/duphold/**
  - tests/modules/nf-core/duphold/**
ectyper:
  - modules/nf-core/ectyper/**
  - tests/modules/nf-core/ectyper/**
eido/convert:
  - modules/nf-core/eido/convert/**
  - tests/modules/nf-core/eido/convert/**
eido/validate:
  - modules/nf-core/eido/validate/**
  - tests/modules/nf-core/eido/validate/**
eigenstratdatabasetools/eigenstratsnpcoverage:
  - modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/**
  - tests/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/**
elprep/filter:
  - modules/nf-core/elprep/filter/**
  - tests/modules/nf-core/elprep/filter/**
elprep/merge:
  - modules/nf-core/elprep/merge/**
  - tests/modules/nf-core/elprep/merge/**
elprep/split:
  - modules/nf-core/elprep/split/**
  - tests/modules/nf-core/elprep/split/**
emboss/cons:
  - modules/nf-core/emboss/cons/**
  - tests/modules/nf-core/emboss/cons/**
emboss/revseq:
  - modules/nf-core/emboss/revseq/**
  - tests/modules/nf-core/emboss/revseq/**
emboss/seqret:
  - modules/nf-core/emboss/seqret/**
  - tests/modules/nf-core/emboss/seqret/**
emmtyper:
  - modules/nf-core/emmtyper/**
  - tests/modules/nf-core/emmtyper/**
endorspy:
  - modules/nf-core/endorspy/**
  - tests/modules/nf-core/endorspy/**
ensemblvep/filtervep:
  - modules/nf-core/ensemblvep/filtervep/**
  - tests/modules/nf-core/ensemblvep/filtervep/**
entrezdirect/esearch:
  - modules/nf-core/entrezdirect/esearch/**
  - tests/modules/nf-core/entrezdirect/esearch/**
entrezdirect/esummary:
  - modules/nf-core/entrezdirect/esummary/**
  - tests/modules/nf-core/entrezdirect/esummary/**
entrezdirect/xtract:
  - modules/nf-core/entrezdirect/xtract/**
  - tests/modules/nf-core/entrezdirect/xtract/**
epang/place:
  - modules/nf-core/epang/place/**
  - tests/modules/nf-core/epang/place/
epang/split:
  - modules/nf-core/epang/split/**
  - tests/modules/nf-core/epang/split/**
estsfs:
  - modules/nf-core/estsfs/**
  - tests/modules/nf-core/estsfs/**
expansionhunterdenovo/merge:
  - modules/nf-core/expansionhunterdenovo/merge/**
  - tests/modules/nf-core/expansionhunterdenovo/merge/**
expansionhunterdenovo/profile:
  - modules/nf-core/expansionhunterdenovo/profile/**
  - tests/modules/nf-core/expansionhunterdenovo/profile/**
faqcs:
  - modules/nf-core/faqcs/**
  - tests/modules/nf-core/faqcs/**
fastawindows:
  - modules/nf-core/fastawindows/**
  - tests/modules/nf-core/fastawindows/**
fastk/fastk:
  - modules/nf-core/fastk/fastk/**
  - tests/modules/nf-core/fastk/fastk/**
fastk/histex:
  - modules/nf-core/fastk/histex/**
  - tests/modules/nf-core/fastk/histex/**
fastk/merge:
  - modules/nf-core/fastk/merge/**
  - tests/modules/nf-core/fastk/merge/**
fasttree:
  - modules/nf-core/fasttree/**
  - tests/modules/nf-core/fasttree/**
fcs/fcsadaptor:
  - modules/nf-core/fcs/fcsadaptor/**
  - tests/modules/nf-core/fcs/fcsadaptor/**
fcs/fcsgx:
  - modules/nf-core/fcs/fcsgx/**
  - tests/modules/nf-core/fcs/fcsgx/**
ffq:
  - modules/nf-core/ffq/**
  - tests/modules/nf-core/ffq/**
fgbio/callduplexconsensusreads:
  - modules/nf-core/fgbio/callduplexconsensusreads/**
  - tests/modules/nf-core/fgbio/callduplexconsensusreads/**
fgbio/callmolecularconsensusreads:
  - modules/nf-core/fgbio/callmolecularconsensusreads/**
  - tests/modules/nf-core/fgbio/callmolecularconsensusreads/**
fgbio/filterconsensusreads:
  - modules/nf-core/fgbio/filterconsensusreads/**
  - tests/modules/nf-core/fgbio/filterconsensusreads/**
fgbio/groupreadsbyumi:
  - modules/nf-core/fgbio/groupreadsbyumi/**
  - tests/modules/nf-core/fgbio/groupreadsbyumi/**
fgbio/sortbam:
  - modules/nf-core/fgbio/sortbam/**
  - tests/modules/nf-core/fgbio/sortbam/**
fgbio/zipperbams:
  - modules/nf-core/fgbio/zipperbams/**
  - tests/modules/nf-core/fgbio/zipperbams/**
fqtk:
  - modules/nf-core/fqtk/**
  - modules/nf-core/untar/**
  - tests/modules/nf-core/fqtk/**
galah:
  - modules/nf-core/galah/**
  - tests/modules/nf-core/galah/**
gamma/gamma:
  - modules/nf-core/gamma/gamma/**
  - tests/modules/nf-core/gamma/gamma/**
gangstr:
  - modules/nf-core/gangstr/**
  - tests/modules/nf-core/gangstr/**
gappa/examineassign:
  - modules/nf-core/gappa/examineassign/**
  - tests/modules/nf-core/gappa/examineassign/**
gappa/examinegraft:
  - modules/nf-core/gappa/examinegraft/**
  - tests/modules/nf-core/gappa/examinegraft/**
gappa/examineheattree:
  - modules/nf-core/gappa/examineheattree/**
  - tests/modules/nf-core/gappa/examineheattree/**
gatk/indelrealigner:
  - modules/nf-core/gatk/indelrealigner/**
  - tests/modules/nf-core/gatk/indelrealigner/**
gatk/realignertargetcreator:
  - modules/nf-core/gatk/realignertargetcreator/**
  - tests/modules/nf-core/gatk/realignertargetcreator/**
gatk/unifiedgenotyper:
  - modules/nf-core/gatk/unifiedgenotyper/**
  - tests/modules/nf-core/gatk/unifiedgenotyper/**
gatk4/applyvqsr:
  - modules/nf-core/gatk4/applyvqsr/**
  - tests/modules/nf-core/gatk4/applyvqsr/**
gatk4/calculatecontamination:
  - modules/nf-core/gatk4/calculatecontamination/**
  - tests/modules/nf-core/gatk4/calculatecontamination/**
gatk4/calibratedragstrmodel:
  - modules/nf-core/gatk4/calibratedragstrmodel/**
  - tests/modules/nf-core/gatk4/calibratedragstrmodel/**
gatk4/cnnscorevariants:
  - modules/nf-core/gatk4/cnnscorevariants/**
  - tests/modules/nf-core/gatk4/cnnscorevariants/**
gatk4/collectreadcounts:
  - modules/nf-core/gatk4/collectreadcounts/**
  - tests/modules/nf-core/gatk4/collectreadcounts/**
gatk4/collectsvevidence:
  - modules/nf-core/gatk4/collectsvevidence/**
  - tests/modules/nf-core/gatk4/collectsvevidence/**
gatk4/composestrtablefile:
  - modules/nf-core/gatk4/composestrtablefile/**
  - tests/modules/nf-core/gatk4/composestrtablefile/**
gatk4/condensedepthevidence:
  - modules/nf-core/gatk4/condensedepthevidence/**
  - tests/modules/nf-core/gatk4/condensedepthevidence/**
gatk4/createreadcountpanelofnormals:
  - modules/nf-core/gatk4/createreadcountpanelofnormals/**
  - tests/modules/nf-core/gatk4/createreadcountpanelofnormals/**
gatk4/createsequencedictionary:
  - modules/nf-core/gatk4/createsequencedictionary/**
  - tests/modules/nf-core/gatk4/createsequencedictionary/**
gatk4/createsomaticpanelofnormals:
  - modules/nf-core/gatk4/createsomaticpanelofnormals/**
  - tests/modules/nf-core/gatk4/createsomaticpanelofnormals/**
gatk4/determinegermlinecontigploidy:
  - modules/nf-core/gatk4/determinegermlinecontigploidy/**
  - tests/modules/nf-core/gatk4/determinegermlinecontigploidy/**
gatk4/fastqtosam:
  - modules/nf-core/gatk4/fastqtosam/**
  - tests/modules/nf-core/gatk4/fastqtosam/**
gatk4/filterintervals:
  - modules/nf-core/gatk4/filterintervals/**
  - tests/modules/nf-core/gatk4/filterintervals/**
gatk4/filtermutectcalls:
  - modules/nf-core/gatk4/filtermutectcalls/**
  - tests/modules/nf-core/gatk4/filtermutectcalls/**
gatk4/filtervarianttranches:
  - modules/nf-core/gatk4/filtervarianttranches/**
  - tests/modules/nf-core/gatk4/filtervarianttranches/**
gatk4/gatherbqsrreports:
  - modules/nf-core/gatk4/gatherbqsrreports/**
  - tests/modules/nf-core/gatk4/gatherbqsrreports/**
gatk4/gatherpileupsummaries:
  - modules/nf-core/gatk4/gatherpileupsummaries/**
  - tests/modules/nf-core/gatk4/gatherpileupsummaries/**
gatk4/genotypegvcfs:
  - modules/nf-core/gatk4/genotypegvcfs/**
  - tests/modules/nf-core/gatk4/genotypegvcfs/**
gatk4/germlinecnvcaller:
  - modules/nf-core/gatk4/germlinecnvcaller/**
  - tests/modules/nf-core/gatk4/germlinecnvcaller/**
gatk4/getpileupsummaries:
  - modules/nf-core/gatk4/getpileupsummaries/**
  - tests/modules/nf-core/gatk4/getpileupsummaries/**
gatk4/indexfeaturefile:
  - modules/nf-core/gatk4/indexfeaturefile/**
  - tests/modules/nf-core/gatk4/indexfeaturefile/**
gatk4/intervallisttobed:
  - modules/nf-core/gatk4/intervallisttobed/**
  - tests/modules/nf-core/gatk4/intervallisttobed/**
gatk4/intervallisttools:
  - modules/nf-core/gatk4/intervallisttools/**
  - tests/modules/nf-core/gatk4/intervallisttools/**
gatk4/learnreadorientationmodel:
  - modules/nf-core/gatk4/learnreadorientationmodel/**
  - tests/modules/nf-core/gatk4/learnreadorientationmodel/**
gatk4/leftalignandtrimvariants:
  - modules/nf-core/gatk4/leftalignandtrimvariants/**
  - tests/modules/nf-core/gatk4/leftalignandtrimvariants/**
gatk4/mergebamalignment:
  - modules/nf-core/gatk4/mergebamalignment/**
  - tests/modules/nf-core/gatk4/mergebamalignment/**
gatk4/mergemutectstats:
  - modules/nf-core/gatk4/mergemutectstats/**
  - tests/modules/nf-core/gatk4/mergemutectstats/**
gatk4/postprocessgermlinecnvcalls:
  - modules/nf-core/gatk4/postprocessgermlinecnvcalls/**
  - tests/modules/nf-core/gatk4/postprocessgermlinecnvcalls/**
gatk4/preprocessintervals:
  - modules/nf-core/gatk4/preprocessintervals/**
  - tests/modules/nf-core/gatk4/preprocessintervals/**
gatk4/printreads:
  - modules/nf-core/gatk4/printreads/**
  - tests/modules/nf-core/gatk4/printreads/**
gatk4/printsvevidence:
  - modules/nf-core/gatk4/printsvevidence/**
  - tests/modules/nf-core/gatk4/printsvevidence/**
gatk4/revertsam:
  - modules/nf-core/gatk4/revertsam/**
  - tests/modules/nf-core/gatk4/revertsam/**
gatk4/samtofastq:
  - modules/nf-core/gatk4/samtofastq/**
  - tests/modules/nf-core/gatk4/samtofastq/**
gatk4/selectsamples:
  - modules/nf-core/gatk4/selectsamples/**
  - tests/modules/nf-core/gatk4/selectsamples/**
gatk4/shiftfasta:
  - modules/nf-core/gatk4/shiftfasta/**
  - tests/modules/nf-core/gatk4/shiftfasta/**
gatk4/sitedepthtobaf:
  - modules/nf-core/gatk4/sitedepthtobaf/**
  - tests/modules/nf-core/gatk4/sitedepthtobaf/**
gatk4/splitcram:
  - modules/nf-core/gatk4/splitcram/**
  - tests/modules/nf-core/gatk4/splitcram/**
gatk4/splitintervals:
  - modules/nf-core/gatk4/splitintervals/**
  - tests/modules/nf-core/gatk4/splitintervals/**
gatk4/variantfiltration:
  - modules/nf-core/gatk4/variantfiltration/**
  - tests/modules/nf-core/gatk4/variantfiltration/**
gatk4/variantrecalibrator:
  - modules/nf-core/gatk4/variantrecalibrator/**
  - tests/modules/nf-core/gatk4/variantrecalibrator/**
gatk4spark/baserecalibrator:
  - modules/nf-core/gatk4spark/baserecalibrator/**
  - tests/modules/nf-core/gatk4spark/baserecalibrator/**
gem2/gem2bedmappability:
  - modules/nf-core/gem2/gem2bedmappability/**
  - tests/modules/nf-core/gem2/gem2bedmappability/**
gem2/gemindexer:
  - modules/nf-core/gem2/gemindexer/**
  - tests/modules/nf-core/gem2/gemindexer/**
gem2/gemmappability:
  - modules/nf-core/gem2/gemmappability/**
  - tests/modules/nf-core/gem2/gemmappability/**
gem3/gem3indexer:
  - modules/nf-core/gem3/gem3indexer/**
  - tests/modules/nf-core/gem3/gem3indexer/**
genescopefk:
  - modules/nf-core/genescopefk/**
  - tests/modules/nf-core/genescopefk/**
genmap/index:
  - modules/nf-core/genmap/index/**
  - tests/modules/nf-core/genmap/index/**
genmap/map:
  - modules/nf-core/genmap/map/**
  - tests/modules/nf-core/genmap/map/**
genotyphi/parse:
  - modules/nf-core/genotyphi/parse/**
  - tests/modules/nf-core/genotyphi/parse/**
genrich:
  - modules/nf-core/genrich/**
  - tests/modules/nf-core/genrich/**
geoquery/getgeo:
  - modules/nf-core/geoquery/getgeo/**
  - tests/modules/nf-core/geoquery/getgeo/**
gfaffix:
  - modules/nf-core/gfaffix/**
  - tests/modules/nf-core/gfaffix/**
gfastats:
  - modules/nf-core/gfastats/**
  - tests/modules/nf-core/gfastats/**
gfatools/gfa2fa:
  - modules/nf-core/gfatools/gfa2fa/**
  - tests/modules/nf-core/gfatools/gfa2fa/**
gfatools/stat:
  - modules/nf-core/gfatools/stat/**
  - tests/modules/nf-core/gfatools/stat/**
gffcompare:
  - modules/nf-core/gffcompare/**
  - tests/modules/nf-core/gffcompare/**
gget/gget:
  - modules/nf-core/gget/gget/**
  - tests/modules/nf-core/gget/gget/**
glimpse2/concordance:
  - modules/nf-core/glimpse2/concordance/**
  - tests/modules/nf-core/glimpse2/concordance/**
glnexus:
  - modules/nf-core/glnexus/**
  - tests/modules/nf-core/glnexus/**
goat/taxonsearch:
  - modules/nf-core/goat/taxonsearch/**
  - tests/modules/nf-core/goat/taxonsearch/**
goleft/indexcov:
  - modules/nf-core/goleft/indexcov/**
  - tests/modules/nf-core/goleft/indexcov/**
goleft/indexsplit:
  - modules/nf-core/goleft/indexsplit/**
  - tests/modules/nf-core/goleft/indexsplit/**
gprofiler2/gost:
  - modules/nf-core/gprofiler2/gost/**
  - tests/modules/nf-core/gprofiler2/gost/**
graphmap2/align:
  - modules/nf-core/graphmap2/align/**
  - tests/modules/nf-core/graphmap2/align/**
graphmap2/index:
  - modules/nf-core/graphmap2/index/**
  - tests/modules/nf-core/graphmap2/index/**
graphtyper/genotype:
  - modules/nf-core/graphtyper/genotype/**
  - tests/modules/nf-core/graphtyper/genotype/**
graphtyper/vcfconcatenate:
  - modules/nf-core/graphtyper/vcfconcatenate/**
  - tests/modules/nf-core/graphtyper/vcfconcatenate/**
grids/gridsssomaticfilter:
  - modules/nf-core/grids/gridsssomaticfilter/**
  - tests/modules/nf-core/grids/gridsssomaticfilter/**
gridss/gridss:
  - modules/nf-core/gridss/gridss/**
  - tests/modules/nf-core/gridss/gridss/**
gridss/gridssgenerateponbedpe:
  - modules/nf-core/gridss/gridssgenerateponbedpe/**
  - tests/modules/nf-core/gridss/gridssgenerateponbedpe/**
gsea/gsea:
  - modules/nf-core/gsea/gsea/**
  - tests/modules/nf-core/gsea/gsea/**
gstama/collapse:
  - modules/nf-core/gstama/collapse/**
  - tests/modules/nf-core/gstama/collapse/**
gstama/merge:
  - modules/nf-core/gstama/merge/**
  - tests/modules/nf-core/gstama/merge/**
gstama/polyacleanup:
  - modules/nf-core/gstama/polyacleanup/**
  - tests/modules/nf-core/gstama/polyacleanup/**
gubbins:
  - modules/nf-core/gubbins/**
  - tests/modules/nf-core/gubbins/**
gunc/downloaddb:
  - modules/nf-core/gunc/downloaddb/**
  - tests/modules/nf-core/gunc/downloaddb/**
gunc/mergecheckm:
  - modules/nf-core/gunc/mergecheckm/**
  - tests/modules/nf-core/gunc/mergecheckm/**
gunc/run:
  - modules/nf-core/gunc/run/**
  - tests/modules/nf-core/gunc/run/**
gvcftools/extractvariants:
  - modules/nf-core/gvcftools/extractvariants/**
  - tests/modules/nf-core/gvcftools/extractvariants/**
hapibd:
  - modules/nf-core/hapibd/**
  - tests/modules/nf-core/hapibd/**
haplocheck:
  - modules/nf-core/haplocheck/**
  - tests/modules/nf-core/haplocheck/**
haplogrep2/classify:
  - modules/nf-core/haplogrep2/classify/**
  - tests/modules/nf-core/haplogrep2/classify/**
happy/happy:
  - modules/nf-core/happy/happy/**
  - tests/modules/nf-core/happy/happy/**
happy/sompy:
  - modules/nf-core/happy/sompy/**
  - tests/modules/nf-core/happy/sompy/**
hicap:
  - modules/nf-core/hicap/**
  - tests/modules/nf-core/hicap/**
hicexplorer/hicpca:
  - modules/nf-core/hicexplorer/hicpca/**
  - tests/modules/nf-core/hicexplorer/hicpca/**
hifiasm:
  - modules/nf-core/hifiasm/**
  - tests/modules/nf-core/hifiasm/**
hlala/preparegraph:
  - modules/nf-core/hlala/preparegraph/**
  - tests/modules/nf-core/hlala/preparegraph/**
hlala/typing:
  - modules/nf-core/hlala/typing/**
  - tests/modules/nf-core/hlala/typing/**
hmmer/eslalimask:
  - modules/nf-core/hmmer/eslalimask/**
  - tests/modules/nf-core/hmmer/eslalimask/**
hmmer/eslreformat:
  - modules/nf-core/hmmer/eslreformat/**
  - tests/modules/nf-core/hmmer/eslreformat/**
hmmer/hmmalign:
  - modules/nf-core/hmmer/hmmalign/**
  - tests/modules/nf-core/hmmer/hmmalign/**
hmmer/hmmbuild:
  - modules/nf-core/hmmer/hmmbuild/**
  - tests/modules/nf-core/hmmer/hmmbuild/**
hmmer/hmmfetch:
  - modules/nf-core/hmmer/hmmfetch/**
  - tests/modules/nf-core/hmmer/hmmfetch/**
hmtnote/annotate:
  - modules/nf-core/hmtnote/annotate/**
  - tests/modules/nf-core/hmtnote/annotate/**
homer/annotatepeaks:
  - modules/nf-core/homer/annotatepeaks/**
  - tests/modules/nf-core/homer/annotatepeaks/**
homer/findpeaks:
  - modules/nf-core/homer/findpeaks/**
  - modules/nf-core/homer/maketagdirectory/**
  - tests/modules/nf-core/homer/findpeaks/**
homer/maketagdirectory:
  - modules/nf-core/homer/maketagdirectory/**
  - tests/modules/nf-core/homer/maketagdirectory/**
homer/makeucscfile:
  - modules/nf-core/homer/makeucscfile/**
  - tests/modules/nf-core/homer/makeucscfile/**
homer/pos2bed:
  - modules/nf-core/homer/pos2bed/**
  - modules/nf-core/homer/maketagdirectory/**
  - modules/nf-core/homer/findpeaks/**
  - tests/modules/nf-core/homer/pos2bed/**
hpsuissero:
  - modules/nf-core/hpsuissero/**
  - tests/modules/nf-core/hpsuissero/**
hypo:
  - modules/nf-core/hypo/**
  - tests/modules/nf-core/hypo/**
ichorcna/createpon:
  - modules/nf-core/ichorcna/createpon/**
  - tests/modules/nf-core/ichorcna/createpon/**
ichorcna/run:
  - modules/nf-core/ichorcna/run/**
  - tests/modules/nf-core/ichorcna/run/**
icountmini/metagene:
  - modules/nf-core/icountmini/metagene/**
  - tests/modules/nf-core/icountmini/metagene/**
icountmini/peaks:
  - modules/nf-core/icountmini/peaks/**
  - tests/modules/nf-core/icountmini/peaks/**
icountmini/segment:
  - modules/nf-core/icountmini/segment/**
  - tests/modules/nf-core/icountmini/segment/**
icountmini/sigxls:
  - modules/nf-core/icountmini/sigxls/**
  - tests/modules/nf-core/icountmini/sigxls/**
icountmini/summary:
  - modules/nf-core/icountmini/summary/**
  - tests/modules/nf-core/icountmini/summary/**
idr:
  - modules/nf-core/idr/**
  - tests/modules/nf-core/idr/**
igv/js:
  - modules/nf-core/igv/js/**
  - tests/modules/nf-core/igv/js/**
ilastik/multicut:
  - modules/nf-core/ilastik/multicut/**
  - tests/modules/nf-core/ilastik/multicut/**
ilastik/pixelclassification:
  - modules/nf-core/ilastik/pixelclassification/**
  - tests/modules/nf-core/ilastik/pixelclassification/**
iphop/addtodb:
  - modules/nf-core/iphop/addtodb/**
  - tests/modules/nf-core/iphop/addtodb/**
iphop/download:
  - modules/nf-core/iphop/download/**
  - tests/modules/nf-core/iphop/download/**
iphop/predict:
  - modules/nf-core/iphop/predict/**
  - tests/modules/nf-core/iphop/predict/**
ismapper:
  - modules/nf-core/ismapper/**
  - tests/modules/nf-core/ismapper/**
isoseq3/cluster:
  - modules/nf-core/isoseq3/cluster/**
  - tests/modules/nf-core/isoseq3/cluster/**
isoseq3/refine:
  - modules/nf-core/isoseq3/refine/**
  - tests/modules/nf-core/isoseq3/refine/**
ivar/consensus:
  - modules/nf-core/ivar/consensus/**
  - tests/modules/nf-core/ivar/consensus/**
ivar/trim:
  - modules/nf-core/ivar/trim/**
  - tests/modules/nf-core/ivar/trim/**
ivar/variants:
  - modules/nf-core/ivar/variants/**
  - tests/modules/nf-core/ivar/variants/**
jupyternotebook:
  - modules/nf-core/jupyternotebook/**
  - tests/modules/nf-core/jupyternotebook/**
kat/hist:
  - modules/nf-core/kat/hist/**
  - tests/modules/nf-core/kat/hist/**
khmer/normalizebymedian:
  - modules/nf-core/khmer/normalizebymedian/**
  - tests/modules/nf-core/khmer/normalizebymedian/**
khmer/uniquekmers:
  - modules/nf-core/khmer/uniquekmers/**
  - tests/modules/nf-core/khmer/uniquekmers/**
kleborate:
  - modules/nf-core/kleborate/**
  - tests/modules/nf-core/kleborate/**
kmcp/compute:
  - modules/nf-core/kmcp/compute/**
  - tests/modules/nf-core/kmcp/compute/**
kmcp/index:
  - modules/nf-core/kmcp/index/**
  - tests/modules/nf-core/kmcp/index/**
kmcp/merge:
  - modules/nf-core/kmcp/merge/**
  - tests/modules/nf-core/kmcp/merge/**
kmcp/profile:
  - modules/nf-core/kmcp/profile/**
  - tests/modules/nf-core/kmcp/profile/**
kmcp/search:
  - modules/nf-core/kmcp/search/**
  - tests/modules/nf-core/kmcp/search/**
kofamscan:
  - modules/nf-core/kofamscan/**
  - tests/modules/nf-core/kofamscan/**
krakentools/combinekreports:
  - modules/nf-core/krakentools/combinekreports/**
  - tests/modules/nf-core/krakentools/combinekreports/**
krakentools/kreport2krona:
  - modules/nf-core/krakentools/kreport2krona/**
  - tests/modules/nf-core/krakentools/kreport2krona/**
krakenuniq/build:
  - modules/nf-core/krakenuniq/build/**
  - tests/modules/nf-core/krakenuniq/build/**
krakenuniq/download:
  - modules/nf-core/krakenuniq/download/**
  - tests/modules/nf-core/krakenuniq/download/**
krona/kronadb:
  - modules/nf-core/krona/kronadb/**
  - tests/modules/nf-core/krona/kronadb/**
krona/ktimporttaxonomy:
  - modules/nf-core/krona/ktimporttaxonomy/**
  - tests/modules/nf-core/krona/ktimporttaxonomy/**
krona/ktimporttext:
  - modules/nf-core/krona/ktimporttext/**
  - tests/modules/nf-core/krona/ktimporttext/**
krona/ktupdatetaxonomy:
  - modules/nf-core/krona/ktupdatetaxonomy/**
  - tests/modules/nf-core/krona/ktupdatetaxonomy/**
last/dotplot:
  - modules/nf-core/last/dotplot/**
  - tests/modules/nf-core/last/dotplot/**
last/lastal:
  - modules/nf-core/last/lastal/**
  - tests/modules/nf-core/last/lastal/**
last/lastdb:
  - modules/nf-core/last/lastdb/**
  - tests/modules/nf-core/last/lastdb/**
last/mafconvert:
  - modules/nf-core/last/mafconvert/**
  - tests/modules/nf-core/last/mafconvert/**
last/mafswap:
  - modules/nf-core/last/mafswap/**
  - tests/modules/nf-core/last/mafswap/**
last/postmask:
  - modules/nf-core/last/postmask/**
  - tests/modules/nf-core/last/postmask/**
last/split:
  - modules/nf-core/last/split/**
  - tests/modules/nf-core/last/split/**
last/train:
  - modules/nf-core/last/train/**
  - tests/modules/nf-core/last/train/**
leehom:
  - modules/nf-core/leehom/**
  - tests/modules/nf-core/leehom/**
legsta:
  - modules/nf-core/legsta/**
  - tests/modules/nf-core/legsta/**
lima:
  - modules/nf-core/lima/**
  - tests/modules/nf-core/lima/**
limma/differential:
  - modules/nf-core/limma/differential/**
  - tests/modules/nf-core/limma/differential/**
lissero:
  - modules/nf-core/lissero/**
  - tests/modules/nf-core/lissero/**
lofreq/call:
  - modules/nf-core/lofreq/call/**
  - tests/modules/nf-core/lofreq/call/**
lofreq/callparallel:
  - modules/nf-core/lofreq/callparallel/**
  - tests/modules/nf-core/lofreq/callparallel/**
lofreq/filter:
  - modules/nf-core/lofreq/filter/**
  - tests/modules/nf-core/lofreq/filter/**
lofreq/indelqual:
  - modules/nf-core/lofreq/indelqual/**
  - tests/modules/nf-core/lofreq/indelqual/**
lofreq/somatic:
  - modules/nf-core/lofreq/somatic/**
  - tests/modules/nf-core/lofreq/somatic/**
macrel/contigs:
  - modules/nf-core/macrel/contigs/**
  - tests/modules/nf-core/macrel/contigs/**
macs2/callpeak:
  - modules/nf-core/macs2/callpeak/**
  - tests/modules/nf-core/macs2/callpeak/**
mageck/count:
  - modules/nf-core/mageck/count/**
  - tests/modules/nf-core/mageck/count/**
mageck/mle:
  - modules/nf-core/mageck/mle/**
  - tests/modules/nf-core/mageck/mle/**
mageck/test:
  - modules/nf-core/mageck/test/**
  - tests/modules/nf-core/mageck/test/**
mapad/index:
  - modules/nf-core/mapad/index/**
  - tests/modules/nf-core/mapad/index/**
mapad/map:
  - modules/nf-core/mapad/map/**
  - tests/modules/nf-core/mapad/map/**
mapdamage2:
  - modules/nf-core/mapdamage2/**
  - tests/modules/nf-core/mapdamage2/**
mash/dist:
  - modules/nf-core/mash/dist/**
  - tests/modules/nf-core/mash/dist/**
mashtree:
  - modules/nf-core/mashtree/**
  - tests/modules/nf-core/mashtree/**
maxbin2:
  - modules/nf-core/maxbin2/**
  - tests/modules/nf-core/maxbin2/**
maxquant/lfq:
  - modules/nf-core/maxquant/lfq/**
  - tests/modules/nf-core/maxquant/lfq/**
mcroni:
  - modules/nf-core/mcroni/**
  - tests/modules/nf-core/mcroni/**
md5sum:
  - modules/nf-core/md5sum/**
  - tests/modules/nf-core/md5sum/**
megahit:
  - modules/nf-core/megahit/**
  - tests/modules/nf-core/megahit/**
megan/daa2info:
  - modules/nf-core/megan/daa2info/**
  - tests/modules/nf-core/megan/daa2info/**
megan/rma2info:
  - modules/nf-core/megan/rma2info/**
  - tests/modules/nf-core/megan/rma2info/**
melt:
  - modules/nf-core/melt/**
  - tests/modules/nf-core/melt/**
meningotype:
  - modules/nf-core/meningotype/**
  - tests/modules/nf-core/meningotype/**
merqury:
  - modules/nf-core/merqury/**
  - tests/modules/nf-core/merqury/**
merquryfk/katcomp:
  - modules/nf-core/merquryfk/katcomp/**
  - tests/modules/nf-core/merquryfk/katcomp/**
merquryfk/katgc:
  - modules/nf-core/merquryfk/katgc/**
  - tests/modules/nf-core/merquryfk/katgc/**
merquryfk/merquryfk:
  - modules/nf-core/merquryfk/merquryfk/**
  - tests/modules/nf-core/merquryfk/merquryfk/**
merquryfk/ploidyplot:
  - modules/nf-core/merquryfk/ploidyplot/**
  - tests/modules/nf-core/merquryfk/ploidyplot/**
metabat2/jgisummarizebamcontigdepths:
  - modules/nf-core/metabat2/jgisummarizebamcontigdepths/**
  - tests/modules/nf-core/metabat2/jgisummarizebamcontigdepths/**
metabat2/metabat2:
  - modules/nf-core/metabat2/metabat2/**
  - tests/modules/nf-core/metabat2/metabat2/**
metaeuk/easypredict:
  - modules/nf-core/metaeuk/easypredict/**
  - tests/modules/nf-core/metaeuk/easypredict/**
metaphlan/makedb:
  - modules/nf-core/metaphlan/makedb/**
  - tests/modules/nf-core/metaphlan/makedb/**
metaphlan/mergemetaphlantables:
  - modules/nf-core/metaphlan/mergemetaphlantables/**
  - tests/modules/nf-core/metaphlan/mergemetaphlantables/**
metaphlan/metaphlan:
  - modules/nf-core/metaphlan/metaphlan/**
  - tests/modules/nf-core/metaphlan/metaphlan/**
metaphlan3/mergemetaphlantables:
  - modules/nf-core/metaphlan3/mergemetaphlantables/**
  - tests/modules/nf-core/metaphlan3/mergemetaphlantables/**
metaphlan3/metaphlan3:
  - modules/nf-core/metaphlan3/metaphlan3/**
  - tests/modules/nf-core/metaphlan3/metaphlan3/**
methyldackel/extract:
  - modules/nf-core/methyldackel/extract/**
  - tests/modules/nf-core/methyldackel/extract/**
methyldackel/mbias:
  - modules/nf-core/methyldackel/mbias/**
  - tests/modules/nf-core/methyldackel/mbias/**
midas/run:
  - modules/nf-core/midas/run/**
  - tests/modules/nf-core/midas/run/**
minia:
  - modules/nf-core/minia/**
  - tests/modules/nf-core/minia/**
miniasm:
  - modules/nf-core/miniasm/**
  - tests/modules/nf-core/miniasm/**
miniprot/align:
  - modules/miniprot/align/**
  - tests/modules/miniprot/align/**
miniprot/index:
  - modules/nf-core/miniprot/index/**
  - tests/modules/nf-core/miniprot/index/**
miranda:
  - modules/nf-core/miranda/**
  - tests/modules/nf-core/miranda/**
mitohifi/findmitoreference:
  - modules/nf-core/mitohifi/findmitoreference/**
  - tests/modules/nf-core/mitohifi/findmitoreference/**
mitohifi/mitohifi:
  - modules/nf-core/mitohifi/mitohifi/**
  - tests/modules/nf-core/mitohifi/mitohifi/**
mmseqs/cluster:
  - modules/nf-core/mmseqs/cluster/**
  - tests/modules/nf-core/mmseqs/cluster/**
mmseqs/databases:
  - modules/nf-core/mmseqs/databases/**
  - tests/modules/nf-core/mmseqs/databases/**
mmseqs/easysearch:
  - modules/nf-core/mmseqs/easysearch/**
  - tests/modules/nf-core/mmseqs/easysearch/**
mmseqs/search:
  - modules/nf-core/mmseqs/search/**
  - tests/modules/nf-core/mmseqs/search/**
mmseqs/tsv2exprofiledb:
  - modules/nf-core/mmseqs/tsv2exprofiledb/**
  - tests/modules/nf-core/mmseqs/tsv2exprofiledb/**
mobsuite/recon:
  - modules/nf-core/mobsuite/recon/**
  - tests/modules/nf-core/mobsuite/recon/**
motus/downloaddb:
  - modules/nf-core/motus/downloaddb/**
  - tests/modules/nf-core/motus/downloaddb/**
motus/merge:
  - modules/nf-core/motus/merge/**
  - tests/modules/nf-core/motus/merge/**
motus/profile:
  - modules/nf-core/motus/profile/**
  - tests/modules/nf-core/motus/profile/**
msisensor/msi:
  - modules/nf-core/msisensor/msi/**
  - tests/modules/nf-core/msisensor/msi/**
msisensor/scan:
  - modules/nf-core/msisensor/scan/**
  - tests/modules/nf-core/msisensor/scan/**
msisensor2/msi:
  - modules/nf-core/msisensor2/msi/**
  - tests/modules/nf-core/msisensor2/msi/**
msisensor2/scan:
  - modules/nf-core/msisensor2/scan/**
  - tests/modules/nf-core/msisensor2/scan/**
msisensorpro/msisomatic:
  - modules/nf-core/msisensorpro/msisomatic/**
  - tests/modules/nf-core/msisensorpro/msisomatic/**
msisensorpro/scan:
  - modules/nf-core/msisensorpro/scan/**
  - tests/modules/nf-core/msisensorpro/scan/**
mtnucratio:
  - modules/nf-core/mtnucratio/**
  - tests/modules/nf-core/mtnucratio/**
multivcfanalyzer:
  - modules/nf-core/multivcfanalyzer/**
  - tests/modules/nf-core/multivcfanalyzer/**
mummer:
  - modules/nf-core/mummer/**
  - tests/modules/nf-core/mummer/**
muscle:
  - modules/nf-core/muscle/**
  - tests/modules/nf-core/muscle/**
mykrobe/predict:
  - modules/nf-core/mykrobe/predict/**
  - tests/modules/nf-core/mykrobe/predict/**
nanocomp:
  - modules/nf-core/nanocomp/**
  - tests/modules/nf-core/nanocomp/**
nanolyse:
  - modules/nf-core/nanolyse/**
  - tests/modules/nf-core/nanolyse/**
nanomonsv/parse:
  - modules/nf-core/nanomonsv/parse/**
  - tests/modules/nf-core/nanomonsv/parse/**
ncbigenomedownload:
  - modules/nf-core/ncbigenomedownload/**
  - tests/modules/nf-core/ncbigenomedownload/**
ncbitools/vecscreen:
  - modules/nf-core/ncbitools/vecscreen/**
  - tests/modules/nf-core/ncbitools/vecscreen/**
nextclade/datasetget:
  - modules/nf-core/nextclade/datasetget/**
  - tests/modules/nf-core/nextclade/datasetget/**
nextclade/run:
  - modules/nf-core/nextclade/run/**
  - tests/modules/nf-core/nextclade/run/**
nextgenmap:
  - modules/nf-core/nextgenmap/**
  - tests/modules/nf-core/nextgenmap/**
ngmaster:
  - modules/nf-core/ngmaster/**
  - tests/modules/nf-core/ngmaster/**
ngmerge:
  - modules/nf-core/ngmerge/**
  - tests/modules/nf-core/ngmerge/**
ngscheckmate/fastq:
  - modules/nf-core/ngscheckmate/fastq/**
  - tests/modules/nf-core/ngscheckmate/fastq/**
ngscheckmate/ncm:
  - modules/nf-core/ngscheckmate/ncm/**
  - tests/modules/nf-core/ngscheckmate/ncm/**
ngscheckmate/patterngenerator:
  - modules/nf-core/ngscheckmate/patterngenerator/**
  - tests/modules/nf-core/ngscheckmate/patterngenerator/**
ngscheckmate/vafncm:
  - modules/nf-core/ngscheckmate/vafncm/**
  - tests/modules/nf-core/ngscheckmate/vafncm/**
nucmer:
  - modules/nf-core/nucmer/**
  - tests/modules/nf-core/nucmer/**
oncocnv:
  - modules/nf-core/oncocnv/**
  - tests/modules/nf-core/oncocnv/**
paftools/sam2paf:
  - modules/nf-core/paftools/sam2paf/**
  - test/modules/nf-core/paftools/sam2paf/**
pairix:
  - modules/nf-core/pairix/**
  - tests/modules/nf-core/pairix/**
pairtools/dedup:
  - modules/nf-core/pairtools/dedup/**
  - tests/modules/nf-core/pairtools/dedup/**
pairtools/flip:
  - modules/nf-core/pairtools/flip/**
  - tests/modules/nf-core/pairtools/flip/**
pairtools/merge:
  - modules/nf-core/pairtools/merge/**
  - tests/modules/nf-core/pairtools/merge/**
pairtools/parse:
  - modules/nf-core/pairtools/parse/**
  - tests/modules/nf-core/pairtools/parse/**
pairtools/restrict:
  - modules/nf-core/pairtools/restrict/**
  - tests/modules/nf-core/pairtools/restrict/**
pairtools/select:
  - modules/nf-core/pairtools/select/**
  - tests/modules/nf-core/pairtools/select/**
pairtools/sort:
  - modules/nf-core/pairtools/sort/**
  - tests/modules/nf-core/pairtools/sort/**
pairtools/stats:
  - modules/nf-core/pairtools/stats/**
  - tests/modules/nf-core/pairtools/stats/**
panaroo/run:
  - modules/nf-core/panaroo/run/**
  - tests/modules/nf-core/panaroo/run/**
pangolin:
  - modules/nf-core/pangolin/**
  - tests/modules/nf-core/pangolin/**
parabricks/applybqsr:
  - modules/nf-core/parabricks/applybqsr/**
  - tests/modules/nf-core/parabricks/applybqsr/**
parabricks/dbsnp:
  - modules/nf-core/parabricks/dbsnp/**
  - tests/modules/nf-core/parabricks/dbsnp/**
parabricks/deepvariant:
  - modules/nf-core/parabricks/deepvariant/**
  - tests/modules/nf-core/parabricks/deepvariant/**
parabricks/fq2bam:
  - modules/nf-core/parabricks/fq2bam/**
  - tests/modules/nf-core/parabricks/fq2bam/**
parabricks/genotypegvcf:
  - modules/nf-core/parabricks/genotypegvcf/**
  - tests/modules/nf-core/parabricks/genotypegvcf/**
parabricks/haplotypecaller:
  - modules/nf-core/parabricks/haplotypecaller/**
  - tests/modules/nf-core/parabricks/haplotypecaller/**
parabricks/indexgvcf:
  - modules/nf-core/parabricks/indexgvcf/**
  - tests/modules/nf-core/parabricks/indexgvcf/**
parabricks/mutectcaller:
  - modules/nf-core/parabricks/mutectcaller/**
  - tests/modules/nf-core/parabricks/mutectcaller/**
paraclu:
  - modules/nf-core/paraclu/**
  - tests/modules/nf-core/paraclu/**
paragraph/idxdepth:
  - modules/nf-core/paragraph/idxdepth/**
  - tests/modules/nf-core/paragraph/idxdepth/**
paragraph/multigrmpy:
  - modules/nf-core/paragraph/multigrmpy/**
  - tests/modules/nf-core/paragraph/multigrmpy/**
paragraph/vcf2paragraph:
  - modules/nf-core/paragraph/vcf2paragraph/**
  - tests/modules/nf-core/paragraph/vcf2paragraph/**
pasty:
  - modules/nf-core/pasty/**
  - tests/modules/nf-core/pasty/**
pbbam/pbmerge:
  - modules/nf-core/pbbam/pbmerge/**
  - tests/modules/nf-core/pbbam/pbmerge/**
pbccs:
  - modules/nf-core/pbccs/**
  - tests/modules/nf-core/pbccs/**
pbptyper:
  - modules/nf-core/pbptyper/**
  - tests/modules/nf-core/pbptyper/**
pear:
  - modules/nf-core/pear/**
  - tests/modules/nf-core/pear/**
peddy:
  - modules/nf-core/peddy/**
  - tests/modules/nf-core/peddy/**
peka:
  - modules/nf-core/peka/**
  - tests/modules/nf-core/peka/**
phantompeakqualtools:
  - modules/nf-core/phantompeakqualtools/**
  - tests/modules/nf-core/phantompeakqualtools/**
phyloflash:
  - modules/nf-core/phyloflash/**
  - tests/modules/nf-core/phyloflash/**
picard/bedtointervallist:
  - modules/nf-core/picard/bedtointervallist/**
  - tests/modules/nf-core/picard/bedtointervallist/**
picard/cleansam:
  - modules/nf-core/picard/cleansam/**
  - tests/modules/nf-core/picard/cleansam/**
picard/collecthsmetrics:
  - modules/nf-core/picard/collecthsmetrics/**
  - tests/modules/nf-core/picard/collecthsmetrics/**
picard/collectinsertsizemetrics:
  - modules/nf-core/picard/collectinsertsizemetrics/**
  - tests/modules/nf-core/picard/collectinsertsizemetrics/**
picard/collectmultiplemetrics:
  - modules/nf-core/picard/collectmultiplemetrics/**
  - tests/modules/nf-core/picard/collectmultiplemetrics/**
picard/collectrnaseqmetrics:
  - modules/nf-core/picard/collectrnaseqmetrics/**
  - tests/modules/nf-core/picard/collectrnaseqmetrics/**
picard/collectwgsmetrics:
  - modules/nf-core/picard/collectwgsmetrics/**
  - tests/modules/nf-core/picard/collectwgsmetrics/**
picard/createsequencedictionary:
  - modules/nf-core/picard/createsequencedictionary/**
  - tests/modules/nf-core/picard/createsequencedictionary/**
picard/fastqtosam:
  - modules/nf-core/picard/fastqtosam/**
  - tests/modules/nf-core/picard/fastqtosam/**
picard/filtersamreads:
  - modules/nf-core/picard/filtersamreads/**
  - tests/modules/nf-core/picard/filtersamreads/**
picard/fixmateinformation:
  - modules/nf-core/picard/fixmateinformation/**
  - tests/modules/nf-core/picard/fixmateinformation/**
picard/liftovervcf:
  - modules/nf-core/picard/liftovervcf/**
  - tests/modules/nf-core/picard/liftovervcf/**
picard/mergesamfiles:
  - modules/nf-core/picard/mergesamfiles/**
  - tests/modules/nf-core/picard/mergesamfiles/**
picard/renamesampleinvcf:
  - modules/nf-core/picard/renamesampleinvcf/**
  - tests/modules/nf-core/picard/renamesampleinvcf/**
picard/scatterintervalsbyns:
  - modules/nf-core/picard/scatterintervalsbyns/**
  - tests/modules/nf-core/picard/scatterintervalsbyns/**
picard/sortsam:
  - modules/nf-core/picard/sortsam/**
  - tests/modules/nf-core/picard/sortsam/**
picard/sortvcf:
  - modules/nf-core/picard/sortvcf/**
  - tests/modules/nf-core/picard/sortvcf/**
pilon:
  - modules/nf-core/pilon/**
  - tests/modules/nf-core/pilon/**
pindel/pindel:
  - modules/nf-core/pindel/pindel/**
  - tests/modules/nf-core/pindel/pindel/**
pints/caller:
  - modules/nf-core/pints/caller/**
  - tests/modules/nf-core/pints/caller/**
pirate:
  - modules/nf-core/pirate/**
  - tests/modules/nf-core/pirate/**
plasmidfinder:
  - modules/nf-core/plasmidfinder/**
  - tests/modules/nf-core/plasmidfinder/**
plasmidid:
  - modules/nf-core/plasmidid/**
  - tests/modules/nf-core/plasmidid/**
platypus:
  - modules/nf-core/platypus/**
  - tests/modules/nf-core/platypus/**
plink/bcf:
  - modules/nf-core/plink/bcf/**
  - tests/modules/nf-core/plink/bcf/**
plink/exclude:
  - modules/nf-core/plink/exclude/**
  - tests/modules/nf-core/plink/exclude/**
plink/extract:
  - modules/nf-core/plink/extract/**
  - tests/modules/nf-core/plink/extract/**
plink/indep:
  - modules/nf-core/plink/indep/**
  - tests/modules/nf-core/plink/indep/**
plink/indeppairwise:
  - modules/nf-core/plink/indeppairwise/**
  - tests/modules/nf-core/plink/indeppairwise/**
plink/recode:
  - modules/nf-core/plink/recode/**
  - tests/modules/nf-core/plink/recode/**
plink/vcf:
  - modules/nf-core/plink/vcf/**
  - tests/modules/nf-core/plink/vcf/**
pmdtools/filter:
  - modules/nf-core/pmdtools/filter/**
  - tests/modules/nf-core/pmdtools/filter/**
pneumocat:
  - modules/nf-core/pneumocat/**
  - tests/modules/nf-core/pneumocat/**
porechop/abi:
  - modules/nf-core/porechop/abi/**
  - tests/modules/nf-core/porechop/abi/**
preseq/ccurve:
  - modules/nf-core/preseq/ccurve/**
  - tests/modules/nf-core/preseq/ccurve/**
pretextsnapshot:
  - modules/nf-core/pretextsnapshot/**
  - tests/modules/nf-core/pretextsnapshot/**
prinseqplusplus:
  - modules/nf-core/prinseqplusplus/**
  - tests/modules/nf-core/prinseqplusplus/**
propr/logratio:
  - modules/nf-core/propr/logratio/**
  - tests/modules/nf-core/propr/logratio/**
proteus/readproteingroups:
  - modules/nf-core/proteus/readproteingroups/**
  - tests/modules/nf-core/proteus/readproteingroups/**
pureclip:
  - modules/nf-core/pureclip/**
  - tests/modules/nf-core/pureclip/**
purecn/coverage:
  - modules/nf-core/purecn/coverage/**
  - tests/modules/nf-core/purecn/coverage/**
purecn/intervalfile:
  - modules/nf-core/purecn/intervalfile/**
  - tests/modules/nf-core/purecn/intervalfile/**
purecn/normaldb:
  - modules/nf-core/purecn/normaldb/**
  - tests/modules/nf-core/purecn/normaldb/**
purecn/run:
  - modules/nf-core/purecn/run/**
  - tests/modules/nf-core/purecn/run/**
purgedups/calcuts:
  - modules/nf-core/purgedups/calcuts/**
  - tests/modules/nf-core/purgedups/calcuts/**
purgedups/getseqs:
  - modules/nf-core/purgedups/getseqs/**
  - tests/modules/nf-core/purgedups/getseqs/**
purgedups/histplot:
  - modules/nf-core/purgedups/histplot/**
  - tests/modules/nf-core/purgedups/histplot/**
purgedups/pbcstat:
  - modules/nf-core/purgedups/pbcstat/**
  - tests/modules/nf-core/purgedups/pbcstat/**
purgedups/purgedups:
  - modules/nf-core/purgedups/purgedups/**
  - tests/modules/nf-core/purgedups/purgedups/**
purgedups/splitfa:
  - modules/nf-core/purgedups/splitfa/**
  - tests/modules/nf-core/purgedups/splitfa/**
pydamage/analyze:
  - modules/nf-core/pydamage/analyze/**
  - tests/modules/nf-core/pydamage/analyze/**
pydamage/filter:
  - modules/nf-core/pydamage/filter/**
  - tests/modules/nf-core/pydamage/filter/**
qcat:
  - modules/nf-core/qcat/**
  - tests/modules/nf-core/qcat/**
quast:
  - modules/nf-core/quast/**
  - tests/modules/nf-core/quast/**
racon:
  - modules/nf-core/racon/**
  - tests/modules/nf-core/racon/**
rapidnj:
  - modules/nf-core/rapidnj/**
  - tests/modules/nf-core/rapidnj/**
raven:
  - modules/nf-core/raven/**
  - tests/modules/nf-core/raven/**
raxmlng:
  - modules/nf-core/raxmlng/**
  - tests/modules/nf-core/raxmlng/**
rhocall/annotate:
  - modules/nf-core/rhocall/annotate/**
  - tests/modules/nf-core/rhocall/annotate/**
rmarkdownnotebook:
  - modules/nf-core/rmarkdownnotebook/**
  - tests/modules/nf-core/rmarkdownnotebook/**
roary:
  - modules/nf-core/roary/**
  - tests/modules/nf-core/roary/**
rtgtools/format:
  - modules/nf-core/rtgtools/format/**
  - tests/modules/nf-core/rtgtools/format/**
rtgtools/pedfilter:
  - modules/nf-core/rtgtools/pedfilter/**
  - tests/modules/nf-core/rtgtools/pedfilter/**
rtgtools/vcfeval:
  - modules/nf-core/rtgtools/vcfeval/**
  - tests/modules/nf-core/rtgtools/vcfeval/**
salsa2:
  - modules/nf-core/salsa2/**
  - tests/modules/nf-core/salsa2/**
sam2lca/analyze:
  - modules/nf-core/sam2lca/analyze/**
  - tests/modules/nf-core/sam2lca/analyze/**
sambamba/flagstat:
  - modules/nf-core/sambamba/flagstat/**
  - tests/modules/nf-core/sambamba/flagstat/**
sambamba/markdup:
  - modules/nf-core/sambamba/markdup/**
  - tests/modules/nf-core/sambamba/markdup/**
samtools/collatefastq:
  - modules/nf-core/samtools/collatefastq/**
  - tests/modules/nf-core/samtools/collatefastq/**
samtools/depth:
  - modules/nf-core/samtools/depth/**
  - tests/modules/nf-core/samtools/depth/**
samtools/dict:
  - modules/nf-core/samtools/dict/**
  - tests/modules/nf-core/samtools/dict/**
samtools/fasta:
  - modules/nf-core/samtools/fasta/**
  - tests/modules/nf-core/samtools/fasta/**
samtools/getrg:
  - modules/nf-core/samtools/getrg/**
  - tests/modules/nf-core/samtools/getrg/**
samtools/import:
  - modules/nf-core/samtools/import/**
  - tests/modules/nf-core/samtools/import/**
samtools/markdup:
  - modules/nf-core/samtools/markdup/**
  - tests/modules/nf-core/samtools/markdup/**
samtools/reheader:
  - modules/nf-core/samtools/reheader/**
  - tests/modules/nf-core/samtools/reheader/**
scimap/mcmicro:
  - modules/nf-core/scimap/mcmicro/**
  - tests/modules/nf-core/scimap/mcmicro/**
scoary:
  - modules/nf-core/scoary/**
  - tests/modules/nf-core/scoary/**
scramble/clusteranalysis:
  - modules/nf-core/scramble/clusteranalysis/**
  - tests/modules/nf-core/scramble/clusteranalysis/**
scramble/clusteridentifier:
  - modules/nf-core/scramble/clusteridentifier/**
  - tests/modules/nf-core/scramble/clusteridentifier/**
seacr/callpeak:
  - modules/nf-core/seacr/callpeak/**
  - tests/modules/nf-core/seacr/callpeak/**
segemehl/align:
  - modules/nf-core/segemehl/align/**
  - tests/modules/nf-core/segemehl/align/**
segemehl/index:
  - modules/nf-core/segemehl/index/**
  - tests/modules/nf-core/segemehl/index/**
semibin/singleeasybin:
  - modules/nf-core/semibin/singleeasybin/**
  - tests/modules/nf-core/semibin/singleeasybin/**
sentieon/applyvarcal:
  - modules/nf-core/sentieon/applyvarcal/**
  - tests/modules/nf-core/sentieon/applyvarcal/**
sentieon/bwaindex:
  - modules/nf-core/sentieon/bwaindex/**
  - tests/modules/nf-core/sentieon/bwaindex/**
sentieon/bwamem:
  - modules/nf-core/sentieon/bwamem/**
  - tests/modules/nf-core/sentieon/bwamem/**
sentieon/datametrics:
  - modules/nf-core/sentieon/datametrics/**
  - tests/modules/nf-core/sentieon/datametrics/**
sentieon/dedup:
  - modules/nf-core/sentieon/dedup/**
  - tests/modules/nf-core/sentieon/dedup/**
sentieon/dnamodelapply:
  - modules/nf-core/sentieon/dnamodelapply/**
  - tests/modules/nf-core/sentieon/dnamodelapply/**
sentieon/dnascope:
  - modules/nf-core/sentieon/dnascope/**
  - tests/modules/nf-core/sentieon/dnascope/**
sentieon/gvcftyper:
  - modules/nf-core/sentieon/gvcftyper/**
  - tests/modules/nf-core/sentieon/gvcftyper/**
sentieon/haplotyper:
  - modules/nf-core/sentieon/haplotyper/**
  - tests/modules/nf-core/sentieon/haplotyper/**
sentieon/readwriter:
  - modules/nf-core/sentieon/readwriter/**
  - tests/modules/nf-core/sentieon/readwriter/**
sentieon/tnfilter:
  - modules/nf-core/sentieon/tnfilter/**
  - tests/modules/nf-core/sentieon/tnfilter/**
sentieon/tnhaplotyper2:
  - modules/nf-core/sentieon/tnhaplotyper2/**
  - tests/modules/nf-core/sentieon/tnhaplotyper2/**
sentieon/tnscope:
  - modules/nf-core/sentieon/tnscope/**
  - tests/modules/nf-core/sentieon/tnscope/**
sentieon/varcal:
  - modules/nf-core/sentieon/varcal/**
  - tests/modules/nf-core/sentieon/varcal/**
sentieon/wgsmetrics:
  - modules/nf-core/sentieon/wgsmetrics/**
  - tests/modules/nf-core/sentieon/wgsmetrics/**
seqkit/fx2tab:
  - modules/nf-core/seqkit/fx2tab/**
  - tests/modules/nf-core/seqkit/fx2tab/**
seqkit/grep:
  - modules/nf-core/seqkit/grep/**
  - tests/modules/nf-core/seqkit/grep/**
seqkit/pair:
  - modules/nf-core/seqkit/pair/**
  - tests/modules/nf-core/seqkit/pair/**
seqkit/replace:
  - modules/nf-core/seqkit/replace/**
  - tests/modules/nf-core/seqkit/replace/**
seqkit/sliding:
  - modules/nf-core/seqkit/sliding/**
  - tests/modules/nf-core/seqkit/sliding/**
seqkit/split2:
  - modules/nf-core/seqkit/split2/**
  - tests/modules/nf-core/seqkit/split2/**
seqkit/stats:
  - modules/nf-core/seqkit/stats/**
  - tests/modules/nf-core/seqkit/stats/**
seqkit/tab2fx:
  - modules/nf-core/seqkit/tab2fx/**
  - tests/modules/nf-core/seqkit/tab2fx/**
seqsero2:
  - modules/nf-core/seqsero2/**
  - tests/modules/nf-core/seqsero2/**
sequencetools/pileupcaller:
  - modules/nf-core/sequencetools/pileupcaller/**
  - tests/modules/nf-core/sequencetools/pileupcaller/**
sequenzautils/bam2seqz:
  - modules/nf-core/sequenzautils/bam2seqz/**
  - tests/modules/nf-core/sequenzautils/bam2seqz/**
sequenzautils/gcwiggle:
  - modules/nf-core/sequenzautils/gcwiggle/**
  - tests/modules/nf-core/sequenzautils/gcwiggle/**
seqwish/induce:
  - modules/nf-core/seqwish/induce/**
  - tests/modules/nf-core/seqwish/induce/**
seroba/run:
  - modules/nf-core/seroba/run/**
  - tests/modules/nf-core/seroba/run/**
sexdeterrmine:
  - modules/nf-core/sexdeterrmine/**
  - tests/modules/nf-core/sexdeterrmine/**
sgdemux:
  - modules/nf-core/sgdemux/**
  - modules/nf-core/untar/**
  - tests/modules/nf-core/sgdemux/**
shapeit5/ligate:
  - modules/nf-core/shapeit5/ligate/**
  - tests/modules/nf-core/shapeit5/ligate/**
shapeit5/phasecommon:
  - modules/nf-core/shapeit5/phasecommon/**
  - tests/modules/nf-core/shapeit5/phasecommon/**
shapeit5/phaserare:
  - modules/nf-core/shapeit5/phaserare/**
  - tests/modules/nf-core/shapeit5/phaserare/**
shapeit5/switch:
  - modules/nf-core/shapeit5/switch/**
  - tests/modules/nf-core/shapeit5/switch/**
shasta:
  - modules/nf-core/shasta/**
  - tests/modules/nf-core/shasta/**
shasum:
  - modules/nf-core/shasum/**
  - tests/modules/nf-core/shasum/**
shigatyper:
  - modules/nf-core/shigatyper/**
  - tests/modules/nf-core/shigatyper/**
shigeifinder:
  - modules/nf-core/shigeifinder/**
  - tests/modules/nf-core/shigeifinder/**
shinyngs/staticdifferential:
  - modules/nf-core/shinyngs/staticdifferential/**
  - tests/modules/nf-core/shinyngs/staticdifferential/**
shinyngs/validatefomcomponents:
  - modules/nf-core/shinyngs/validatefomcomponents/**
  - tests/modules/nf-core/shinyngs/validatefomcomponents/**
shovill:
  - modules/nf-core/shovill/**
  - tests/modules/nf-core/shovill/**
sickle:
  - modules/nf-core/sickle/**
  - tests/modules/nf-core/sickle/**
sistr:
  - modules/nf-core/sistr/**
  - tests/modules/nf-core/sistr/**
slimfastq:
  - modules/nf-core/slimfastq/**
  - tests/modules/nf-core/slimfastq/**
smncopynumbercaller:
  - modules/nf-core/smncopynumbercaller/**
  - tests/modules/nf-core/smncopynumbercaller/**
snapaligner/align:
  - modules/nf-core/snapaligner/align/**
  - tests/modules/nf-core/snapaligner/align/**
snapaligner/index:
  - modules/nf-core/snapaligner/index/**
  - tests/modules/nf-core/snapaligner/index/**
sniffles:
  - modules/nf-core/sniffles/**
  - tests/modules/nf-core/sniffles/**
snippy/core:
  - modules/nf-core/snippy/core/**
  - tests/modules/nf-core/snippy/core/**
snippy/run:
  - modules/nf-core/snippy/run/**
  - tests/modules/nf-core/snippy/run/**
snpdists:
  - modules/nf-core/snpdists/**
  - tests/modules/nf-core/snpdists/**
snpeff/download:
  - modules/nf-core/snpeff/download/**
  - tests/modules/nf-core/snpeff/download/**
snpsift/annotate:
  - modules/nf-core/snpsift/annotate/**
  - tests/modules/nf-core/snpsift/annotate/**
snpsift/dbnsfp:
  - modules/nf-core/snpsift/dbnsfp/**
  - tests/modules/nf-core/snpsift/dbnsfp/**
snpsift/split:
  - modules/nf-core/snpsift/split/**
  - tests/modules/nf-core/snpsift/split/**
snpsites:
  - modules/nf-core/snpsites/**
  - tests/modules/nf-core/snpsites/**
somalier/ancestry:
  - modules/nf-core/somalier/ancestry/**
  - tests/modules/nf-core/somalier/ancestry/**
somalier/extract:
  - modules/nf-core/somalier/extract/**
  - tests/modules/nf-core/somalier/extract/**
somalier/relate:
  - modules/nf-core/somalier/relate/**
  - tests/modules/nf-core/somalier/relate/**
sourmash/compare:
  - modules/nf-core/sourmash/compare/**
  - tests/modules/nf-core/sourmash/compare/**
sourmash/gather:
  - modules/nf-core/sourmash/gather/**
  - tests/modules/nf-core/sourmash/gather/**
sourmash/index:
  - modules/nf-core/sourmash/index/**
  - tests/modules/nf-core/sourmash/index/**
sourmash/taxannotate:
  - modules/nf-core/sourmash/taxannotate/**
  - tests/modules/nf-core/sourmash/taxannotate/**
spades:
  - modules/nf-core/spades/**
  - tests/modules/nf-core/spades/**
spatyper:
  - modules/nf-core/spatyper/**
  - tests/modules/nf-core/spatyper/**
spring/compress:
  - modules/nf-core/spring/compress/**
  - tests/modules/nf-core/spring/compress/**
spring/decompress:
  - modules/nf-core/spring/decompress/**
  - tests/modules/nf-core/spring/decompress/**
srst2/srst2:
  - modules/nf-core/srst2/srst2/**
  - tests/modules/nf-core/srst2/srst2/**
ssuissero:
  - modules/nf-core/ssuissero/**
  - tests/modules/nf-core/ssuissero/**
stadeniolib/scramble:
  - modules/nf-core/stadeniolib/scramble/**
  - tests/modules/nf-core/stadeniolib/scramble/**
staphopiasccmec:
  - modules/nf-core/staphopiasccmec/**
  - tests/modules/nf-core/staphopiasccmec/**
star/starsolo:
  - modules/nf-core/star/starsolo/**
  - tests/modules/nf-core/star/starsolo/**
stecfinder:
  - modules/nf-core/stecfinder/**
  - tests/modules/nf-core/stecfinder/**
stitch:
  - modules/nf-core/stitch/**
  - tests/modules/nf-core/stitch/**
stranger:
  - modules/nf-core/stranger/**
  - tests/modules/nf-core/stranger/**
subworkflows/align_bowtie2:
  - subworkflows/nf-core/align_bowtie2/**
  - tests/subworkflows/nf-core/align_bowtie2/**
subworkflows/bam_cnv_wisecondorx:
  - subworkflows/nf-core/bam_cnv_wisecondorx/**
  - tests/subworkflows/nf-core/bam_cnv_wisecondorx/**
subworkflows/bam_docounts_contamination_angsd:
  - subworkflows/nf-core/bam_docounts_contamination_angsd/**
  - tests/subworkflows/nf-core/bam_docounts_contamination_angsd/**
subworkflows/bam_markduplicates_samtools:
  - subworkflows/nf-core/bam_markduplicates_samtools/**
  - tests/subworkflows/nf-core/bam_markduplicates_samtools/**
subworkflows/bam_ngscheckmate:
  - subworkflows/nf-core/bam_ngscheckmate/**
  - tests/subworkflows/nf-core/bam_ngscheckmate/**
subworkflows/bam_sort_samtools:
  - subworkflows/nf-core/bam_sort_samtools/**
  - tests/subworkflows/nf-core/bam_sort_samtools/**
subworkflows/bam_split_by_region:
  - subworkflows/nf-core/bam_split_by_region/**
  - tests/subworkflows/nf-core/bam_split_by_region/**
subworkflows/bam_tumor_normal_somatic_variant_calling_gatk:
  - subworkflows/nf-core/bam_tumor_normal_somatic_variant_calling_gatk/**
  - tests/subworkflows/nf-core/bam_tumor_normal_somatic_variant_calling_gatk/**
subworkflows/bam_tumor_only_somatic_variant_calling_gatk:
  - subworkflows/nf-core/bam_tumor_only_somatic_variant_calling_gatk/**
  - tests/subworkflows/nf-core/bam_tumor_only_somatic_variant_calling_gatk/**
subworkflows/bam_variant_calling_sort_freebayes_bcftools:
  - subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/**
  - tests/subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/**
subworkflows/bcl_demultiplex:
  - subworkflows/nf-core/bcl_demultiplex/**
  - tests/subworkflows/nf-core/bcl_demultiplex/**
subworkflows/bed_scatter_bedtools:
  - subworkflows/nf-core/bed_scatter_bedtools/**
  - tests/subworkflows/nf-core/bed_scatter_bedtools/**
subworkflows/fasta_binning_concoct:
  - subworkflows/nf-core/fasta_binning_concoct/**
  - tests/subworkflows/nf-core/fasta_binning_concoct/**
subworkflows/fasta_clean_fcs:
  - subworkflows/nf-core/fasta_clean_fcs/**
  - tests/subworkflows/nf-core/fasta_clean_fcs/**
subworkflows/fasta_index_dna:
  - subworkflows/nf-core/fasta_index_dna/**
  - tests/subworkflows/nf-core/fasta_index_dna/**
subworkflows/fastq_align_bwaaln:
  - subworkflows/nf-core/fastq_align_bwaaln/**
  - tests/subworkflows/nf-core/fastq_align_bwaaln/**
subworkflows/fastq_align_chromap:
  - subworkflows/nf-core/fastq_align_chromap/**
  - tests/subworkflows/nf-core/fastq_align_chromap/**
subworkflows/fastq_contam_seqtk_kraken:
  - subworkflows/nf-core/fastq_contam_seqtk_kraken/**
  - tests/subworkflows/nf-core/fastq_contam_seqtk_kraken/**
subworkflows/fastq_create_umi_consensus_fgbio:
  - subworkflows/nf-core/fastq_create_umi_consensus_fgbio/**
  - tests/subworkflows/nf-core/fastq_create_umi_consensus_fgbio/**
subworkflows/fastq_trim_fastp_fastqc:
  - subworkflows/nf-core/fastq_trim_fastp_fastqc/**
  - tests/subworkflows/nf-core/fastq_trim_fastp_fastqc/**
subworkflows/gatk_create_som_pon:
  - subworkflows/nf-core/gatk_create_som_pon/**
  - tests/subworkflows/nf-core/gatk_create_som_pon/**
subworkflows/homer/groseq:
  - subworkflows/nf-core/homer/groseq/**
  - tests/subworkflows/nf-core/homer/groseq/**
subworkflows/multiple_impute_glimpse2:
  - subworkflows/nf-core/multiple_impute_glimpse2/**
  - tests/subworkflows/nf-core/multiple_impute_glimpse2/**
subworkflows/utils_nextflow_pipeline:
  - subworkflows/nf-core/utils_nextflow_pipeline/**
  - tests/subworkflows/nf-core/utils_nextflow_pipeline/**
subworkflows/utils_nfcore_pipeline:
  - subworkflows/nf-core/utils_nfcore_pipeline/**
  - tests/subworkflows/nf-core/utils_nfcore_pipeline/**
subworkflows/vcf_annotate_ensemblvep:
  - subworkflows/nf-core/vcf_annotate_ensemblvep/**
  - tests/subworkflows/nf-core/vcf_annotate_ensemblvep/**
subworkflows/vcf_annotate_ensemblvep_snpeff:
  - subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff/**
  - tests/subworkflows/nf-core/vcf_annotate_ensemblvep_snpeff/**
subworkflows/vcf_annotate_snpeff:
  - subworkflows/nf-core/vcf_annotate_snpeff/**
  - tests/subworkflows/nf-core/vcf_annotate_snpeff/**
subworkflows/vcf_extract_relate_somalier:
  - subworkflows/nf-core/vcf_extract_relate_somalier/**
  - tests/subworkflows/nf-core/vcf_extract_relate_somalier/**
subworkflows/vcf_gather_bcftools:
  - subworkflows/nf-core/vcf_gather_bcftools/**
  - tests/subworkflows/nf-core/vcf_gather_bcftools/**
subworkflows/vcf_phase_shapeit5:
  - subworkflows/nf-core/vcf_phase_shapeit5/**
  - tests/subworkflows/nf-core/vcf_phase_shapeit5/**
survivor/filter:
  - modules/nf-core/survivor/filter/**
  - tests/modules/nf-core/survivor/filter/**
survivor/merge:
  - modules/nf-core/survivor/merge/**
  - tests/modules/nf-core/survivor/merge/**
survivor/simsv:
  - modules/nf-core/survivor/simsv/**
  - tests/modules/nf-core/survivor/simsv/**
svaba:
  - modules/nf-core/svaba/**
  - tests/modules/nf-core/svaba/**
svtk/baftest:
  - modules/nf-core/svtk/baftest/**
  - tests/modules/nf-core/svtk/baftest/**
svtk/countsvtypes:
  - modules/nf-core/svtk/countsvtypes/**
  - tests/modules/nf-core/svtk/countsvtypes/**
svtk/rdtest2vcf:
  - modules/nf-core/svtk/rdtest2vcf/**
  - tests/modules/nf-core/svtk/rdtest2vcf/**
svtk/standardize:
  - modules/nf-core/svtk/standardize/**
  - tests/modules/nf-core/svtk/standardize/**
svtk/vcf2bed:
  - modules/nf-core/svtk/vcf2bed/**
  - tests/modules/nf-core/svtk/vcf2bed/**
svtyper/svtyper:
  - modules/nf-core/svtyper/svtyper/**
  - tests/modules/nf-core/svtyper/svtyper/**
tailfindr:
  - modules/nf-core/tailfindr/**
  - tests/modules/nf-core/tailfindr/**
taxpasta/merge:
  - modules/nf-core/taxpasta/merge/**
  - tests/modules/nf-core/taxpasta/merge/**
taxpasta/standardise:
  - modules/nf-core/taxpasta/standardise/**
  - tests/modules/nf-core/taxpasta/standardise/**
tbprofiler/profile:
  - modules/nf-core/tbprofiler/profile/**
  - tests/modules/nf-core/tbprofiler/profile/**
tiara/tiara:
  - modules/nf-core/tiara/tiara/**
  - tests/modules/nf-core/tiara/tiara/**
topas/gencons:
  - modules/nf-core/topas/gencons/**
  - tests/modules/nf-core/topas/gencons/**
transdecoder/longorf:
  - modules/nf-core/transdecoder/longorf/**
  - tests/modules/nf-core/transdecoder/longorf/**
transdecoder/predict:
  - modules/nf-core/transdecoder/predict/**
  - tests/modules/nf-core/transdecoder/predict/**
trinity:
  - modules/nf-core/trinity/**
  - tests/modules/nf-core/trinity/**
truvari/bench:
  - modules/nf-core/truvari/bench/**
  - tests/modules/nf-core/truvari/bench/**
ucsc/bedtobigbed:
  - modules/nf-core/ucsc/bedtobigbed/**
  - tests/modules/nf-core/ucsc/bedtobigbed/**
ucsc/bigwigaverageoverbed:
  - modules/nf-core/ucsc/bigwigaverageoverbed/**
  - tests/modules/nf-core/ucsc/bigwigaverageoverbed/**
ucsc/gtftogenepred:
  - modules/nf-core/ucsc/gtftogenepred/**
  - tests/modules/nf-core/ucsc/gtftogenepred/**
ucsc/liftover:
  - modules/nf-core/ucsc/liftover/**
  - tests/modules/nf-core/ucsc/liftover/**
ucsc/wigtobigwig:
  - modules/nf-core/ucsc/wigtobigwig/**
  - tests/modules/nf-core/ucsc/wigtobigwig/**
ultra/align:
  - modules/nf-core/ultra/align/**
  - tests/modules/nf-core/ultra/align/**
ultra/index:
  - modules/nf-core/ultra/index/**
  - tests/modules/nf-core/ultra/index/**
ultra/pipeline:
  - modules/nf-core/ultra/pipeline/**
  - tests/modules/nf-core/ultra/pipeline/**
ultraplex:
  - modules/nf-core/ultraplex/**
  - tests/modules/nf-core/ultraplex/**
umitools/group:
  - modules/nf-core/umitools/group/**
  - tests/modules/nf-core/umitools/group/**
unicycler:
  - modules/nf-core/unicycler/**
  - tests/modules/nf-core/unicycler/**
universc:
  - modules/nf-core/universc/**
  - tests/modules/nf-core/universc/**
untarfiles:
  - modules/nf-core/untarfiles/**
  - tests/modules/nf-core/untarfiles/**
unzip:
  - modules/nf-core/unzip/**
  - tests/modules/nf-core/unzip/**
unzipfiles:
  - modules/nf-core/unzipfiles/**
  - tests/modules/nf-core/unzipfiles/**
upd:
  - modules/nf-core/upd/**
  - tests/modules/nf-core/upd/**
variantbam:
  - modules/nf-core/variantbam/**
  - tests/modules/nf-core/variantbam/**
varlociraptor/callvariants:
  - modules/nf-core/varlociraptor/callvariants/**
  - tests/modules/nf-core/varlociraptor/callvariants/**
varlociraptor/estimatealignmentproperties:
  - modules/nf-core/varlociraptor/estimatealignmentproperties/**
  - tests/modules/nf-core/varlociraptor/estimatealignmentproperties/**
varlociraptor/preprocess:
  - modules/nf-core/varlociraptor/preprocess/**
  - tests/modules/nf-core/varlociraptor/preprocess/**
vcf2maf:
  - modules/nf-core/vcf2maf/**
  - tests/modules/nf-core/vcf2maf/**
vcflib/vcfbreakmulti:
  - modules/nf-core/vcflib/vcfbreakmulti/**
  - tests/modules/nf-core/vcflib/vcfbreakmulti/**
vcflib/vcffilter:
  - modules/nf-core/vcflib/vcffilter/**
  - tests/modules/nf-core/vcflib/vcffilter/**
vcflib/vcfuniq:
  - modules/nf-core/vcflib/vcfuniq/**
  - tests/modules/nf-core/vcflib/vcfuniq/**
verifybamid/verifybamid:
  - modules/nf-core/verifybamid/verifybamid/**
  - tests/modules/nf-core/verifybamid/verifybamid/**
verifybamid/verifybamid2:
  - modules/nf-core/verifybamid/verifybamid2/**
  - tests/modules/nf-core/verifybamid/verifybamid2/**
vg/construct:
  - modules/nf-core/vg/construct/**
  - tests/modules/nf-core/vg/construct/**
vg/deconstruct:
  - modules/nf-core/vg/deconstruct/**
  - tests/modules/nf-core/vg/deconstruct/**
vg/index:
  - modules/nf-core/vg/index/**
  - tests/modules/nf-core/vg/index/**
vrhyme/extractunbinned:
  - modules/nf-core/vrhyme/extractunbinned/**
  - tests/modules/nf-core/vrhyme/extractunbinned/**
vrhyme/linkbins:
  - modules/nf-core/vrhyme/linkbins/**
  - tests/modules/nf-core/vrhyme/linkbins/**
vrhyme/vrhyme:
  - modules/nf-core/vrhyme/vrhyme/**
  - tests/modules/nf-core/vrhyme/vrhyme/**
vsearch/sintax:
  - modules/nf-core/vsearch/sintax/**
  - tests/modules/nf-core/vsearch/sintax/**
vsearch/sort:
  - modules/nf-core/vsearch/sort/**
  - tests/modules/nf-core/vsearch/sort/**
vsearch/usearchglobal:
  - modules/nf-core/vsearch/usearchglobal/**
  - tests/modules/nf-core/vsearch/usearchglobal/**
vt/decompose:
  - modules/nf-core/vt/decompose/**
  - tests/modules/nf-core/vt/decompose/**
vt/normalize:
  - modules/nf-core/vt/normalize/**
  - tests/modules/nf-core/vt/normalize/**
wgsim:
  - modules/nf-core/wgsim/**
  - tests/modules/nf-core/wgsim/**
whamg:
  - modules/nf-core/whamg/**
  - tests/modules/nf-core/whamg/**
yahs:
  - modules/nf-core/yahs/**
  - tests/modules/nf-core/yahs/**
yara/index:
  - modules/nf-core/yara/index/**
  - tests/modules/nf-core/yara/index/**
yara/mapper:
  - modules/nf-core/yara/mapper/**
  - tests/modules/nf-core/yara/mapper/**