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meta.yml
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meta.yml
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name: biscuit_bsconv
description: Summarize and/or filter reads based on bisulfite conversion rate
keywords:
- biscuit
- DNA methylation
- WGBS
- scWGBS
- bisulfite sequencing
- aligner
- bam
- filter
tools:
- biscuit:
description: A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data
homepage: https://huishenlab.github.io/biscuit/
documentation: https://huishenlab.github.io/biscuit/docs/subcommand_help.html#biscuit-bsconv
tool_dev_url: https://github.com/huishenlab/biscuit
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM file contained mapped reads
- bai:
type: file
description: BAM file index
- index:
type: directory
description: Biscuit genome index directory (generated with 'biscuit index')
pattern: "BiscuitIndex"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bsconv_bam:
type: file
description: Output BAM file containing filtered read alignments
pattern: "*.{bam}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@njspix"
maintainers:
- "@njspix"