nf-core/hlatyping: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

2.0.0 - Han Solo - 2022-10-18

`Added`

#141 - Add OptiType results to MultiQC report

`Changed`

#140 - Port pipeline to DSL2
#140 - Merge nf-core template updates up to 2.6
#140 - Support for BAM and FASTQ input in the same run
#140 - Support for DNA and RNA input in the same run

`Fixed`

`Dependencies`

`Deprecated`

1.2.0 - lead-sparrow - 2020-08-21

`Added`

#91 - Add pipeline parameter schema
#78 - Add GitHub actions instead of Travis CI
#73 - Add social preview image

`Changed`

#84, #91 - Change input parameters (--input instead of --reads, the parameters --genome and --fasta are deprecated for this pipeline)
#89, #90 - Update to nf-core template v1.10.2
#81, #82 - Update to nf-core template v1.9

`Fixed`

#79 - Fix mapping index issue #68

1.1.5 - Patch release - 2019-06-24

Mini Bugfix Release for MultiQC running in local execution mode

1.1.4 - Patch release - 2019-03-06

Fix issues with centralized configs
Fix with pandas, pinning to numpy 1.15.4 instead of 1.16.0

1.1.3 - Patch release - 2019-02-04

Multiple smaller bugfixes, cleaned up code basis
#48 - Utilizes RNA/DNA reference genome for remapping correctly

1.1.2 - Patch release - 2018-12-12

Fix #37

1.1.1 - Patch release - 2018-08-21

Fix #30
Removed support to pull from Singularity Hub directly, when using the profile singularity. For now, Nextflow will pull the container image from Docker Hub and create the Singularity container on the local host.

1.1.0 - aqua-titanium-crab - 2018-08-14

Fix #17
Fix #13
Fix #12
New profile full_trace that can be used for full trace info broadcast with Nextflow's weblog feature
New profile cfc with setups for the core facility cluster at QBiC

1.0.0 - 2018-07-17

Initial release of nf-core/hlatyping, created with the NGI-NF cookiecutter template