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at the moment pubget outputs some data for each table: a csv file with the content of the table, and a json file with keys like table id, table label, table caption, and the path of the csv file
those are a bit hard to discover & use because they are stored in the article's individual directories, eg in query_0dbec5035dc626ca916d0317b7b9a76f/articles/0b8/pmcid_7664275/tables/
it would be helpful to create a csv in the extractedData directory grouping the info for all tables in all articles. columns could be pmcid,table_number,table_id,table_label,table_caption,n_header_rows,table_data_file
table_data_file would be the path to the table's csv, probably relative to the root of the query directory.
the other keys would be those currently provided in the JSON
The text was updated successfully, but these errors were encountered:
at the moment
pubget
outputs some data for each table: a csv file with the content of the table, and a json file with keys like table id, table label, table caption, and the path of the csv filethose are a bit hard to discover & use because they are stored in the article's individual directories, eg in
query_0dbec5035dc626ca916d0317b7b9a76f/articles/0b8/pmcid_7664275/tables/
it would be helpful to create a csv in the
extractedData
directory grouping the info for all tables in all articles. columns could bepmcid,table_number,table_id,table_label,table_caption,n_header_rows,table_data_file
table_data_file
would be the path to the table's csv, probably relative to the root of the query directory.the other keys would be those currently provided in the JSON
The text was updated successfully, but these errors were encountered: