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configure.eg
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$Header$ -*-Fundamental-*-
Purpose(s):
Track status of autobuild features for NCO
Develop recommended ./configure invocations for each architecture
GNU autotools rely on ~/nco/autobld/config.[guess,sub]
Auto-configuration fails if these routines cannot detect your machine type
This happens periodically as newer machines are introduced
Notify the NCO project if configuration fails in either file
and we will update the config files from the upstream source,
ftp://ftp.gnu.org/pub/gnu/config/config.[guess,sub]
NCO successfully builds (e.g., with bld/Makefile) and runs on virtually all OSs.
This table tracks how well NCO _autobuilds_ (./configure's) on various OSs.
GNU Autotools seem to require a lot of hand tuning on non-LINUX platforms...
Architecture ABI32 ABI64 DAP I18N OpenMP nco_c++ check
AIX Y Y Y Y Y
ALPHA Y Y Y
CRAY
FREEBSD N(10)
HPPA
LINUX como N(11)
LINUX gcc/g++ Y N/A Y Y Y
LINUX icc Y N/A Y Y
LINUXALPHA Y Y Y
LINUXAMD64 Y Y Y
LINUXPPC Y Y N(9)
LINUXSPARC64 Y Y Y
MACOS Y Y Y
NECSX
SGIMP64 cc/CC Y Y Y N(6)
SGIMP64 gcc/g++ N(7) Y
SUNMP cc/CC Y Y Y Y
SUNMP gcc/g++ N(13)
WIN32
-----------------------------------------------------------------------
Key: Y: feature works, N feature broken, N/A not-applicable, blank: not tested (send us your results!)
-----------------------------------------------------------------------
Table footnotes:
06. CC unable to link tst.o because -LANG:std flag not passed to crucial link CC
07. Error making ncap_yacc.c
09. tst fails to find in.nc
10. Major problems with configure script and permissions on installed files
11. Comeau (correctly) insists strdup(), strcasecmp() are not ANSI standard (this should now be fixed, retry)
13. gcc 3.2.1 problem with /usr/include/sys/stat.h in nco_fl_utl.h
17.
-----------------------------------------------------------------------
There are three basic ways to build/install NCO with the GNU autotools:
Method 1. Default installation procedure for system-wide installation.
cd ~/nco;cvs update -kk;make distclean;./configure;make;sudo make install
This simplest default method works if the required libraries
(e.g., libnetcdf.a) are in normal places (e.g., /usr/local/lib).
No special optimizations or features are activated.
Method 2. Optimized installation procedure for system-wide installation.
cd ~/nco;cvs update -kk;make distclean;./configure --enable-optimize-custom;make;sudo make install
Activating --enable-optimize-custom causes NCO to attempt to build with
a set of compiler switches customized for speed.
This will only work if Method 1 worked, so give it a whirl.
Method 3. Recommended/current custom ./configure invocation
System administrators like to install multiple compilers, and
have libraries in weird places.
Serious users of NCO are encouraged to try the configurations below.
The suggestions are alphabetized by (pvmgetarch) machine type.
************************************************************************
To build NCO versions > 2.9.9 with netCDF versions < 3.6, define the
pre-processor token NC_64BIT_OFFSET to '0', e.g., CPPFLAGS='-DNC_64BIT_OFFSET=0'
************************************************************************
Start AIX
status: Appears to work
On AIX, shared libraries and static libraries use the same namespace
Hence, probably safer to either disable-shared or disable-static
hjm: until DODS/DAP and the above mentioned shared/static problem is resolved,
AIX configure string should be: ./configure --disable-dods --disable-shared
************************************************************************
zender@bs1201en:~/nco$ pvmgetarch;uname -a;~/nco/autobld/config.guess
AIX
AIX bs1201en 1 5 0023F7EA4C00
powerpc-ibm-aix5.1.0.0
For ABI=64:
# blueice, bluevista, dave, esmf
# Enable OpenMP with CFLAGS and LDFLAGS ='-qsmp=omp'
# C_INC is a directory guaranteed to be searched first
# C_INC is useful on AIX platforms that have alternative C-headers (e.g., gcc) installed in a directory (e.g., /usr/local/include) searched for other (e.g., antlr) headers
# Specifying both C_INC and ANTLR_INC would cause the pre-processor to grab
# C-headers from C_INC and antlr headers from ANTLR_INC
# C_INC disambiguates native C-headers (/usr/include) from antlr headers (/usr/local/include) on UCI's ESMF
#
export GNU_TRP=`~/nco/autobld/config.guess`
export OBJECT_MODE='64' # AIX-specific hack
cd ~/nco;/bin/rm -f *.foo;make distclean
ANTLR_INC='/usr/local/include' C_INC='/usr/include' CC='xlc_r' CFLAGS='-qsmp=omp' CXX='xlC_r' LDFLAGS='-brtl -qsmp=omp' NETCDF_INC='/usr/local/include' NETCDF_LIB=${NETCDF_LIB} ./configure --disable-gsl --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# bluefire 20120718 not tested yet
export GNU_TRP=`~/nco/autobld/config.guess`
export OBJECT_MODE='64' # AIX-specific hack
cd ~/nco;/bin/rm -f *.foo;make distclean
ANTLR_INC='/contrib/antlr-2.7.7/include' C_INC='/usr/include' CC='xlc_r' CXX='xlC_r' LDFLAGS='-brtl' GSL_ROOT='/contrib/gsl-1.12' NETCDF_INC='/contrib/netcdf/4.1.3_seq/include' NETCDF_LIB='/contrib/netcdf/4.1.3_seq/include' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo zender@dust.ess.uci.edu:/var/ftp/pub/zender/nco/rgr
# bluefire
export GNU_TRP=`~/nco/autobld/config.guess`
export OBJECT_MODE='64' # AIX-specific hack
cd ~/nco;/bin/rm -f *.foo;make distclean
ANTLR_INC='/usr/local/include' C_INC='/usr/include' CC='xlc_r' CXX='xlC_r' LDFLAGS='-brtl' GSL_ROOT='/contrib/gsl-1.12' NETCDF_INC='/usr/local/include' NETCDF_LIB=${NETCDF_LIB} ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo zender@dust.ess.uci.edu:/var/ftp/pub/zender/nco/rgr
For ABI=32:
export GNU_TRP=`~/nco/autobld/config.guess`
export OBJECT_MODE='32' # AIX-specific hack
cd ~/nco;/bin/rm -f *.foo;make distclean
ANTLR_INC='/usr/local/include' C_INC='/usr/include' CC='xlc_r' CXX='xlC_r' LDFLAGS='-brtl' NETCDF_INC='/usr/local/include' NETCDF_LIB='/usr/local/lib32/r4i4' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End AIX
************************************************************************
************************************************************************
Start ALPHA
Status: Does not work
************************************************************************
spe171.testdrive.hp.com
CC=/bin/c89
CPPFLAGS=-D_HPUX_SOURCE
FC=/opt/fortran/bin/fort77
FFLAGS=-w
FLIBS=-lU77
CXX=aCC
zender@spe171.testdrive.hp.com> ./pvmgetarch;uname -a;${HOME}/nco/autobld/config.guess
ALPHA
OSF1 spe171.testdrive.hp.com V5.1 2650 alpha
alpha-dec-osf5.1
gcc/g++:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
NETCDF_INC=${HOME}/include NETCDF_LIB=${HOME}/lib/${GNU_TRP} ./configure --enable-optimize-custom --prefix=${HOME} --bindir=${HOME}/bin/${GNU_TRP} --datadir=${HOME}/nco/data --libdir=${HOME}/lib/${GNU_TRP} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End ALPHA
************************************************************************
************************************************************************
Start FREEBSD
Status:
************************************************************************
bash-2.05a$ ./pvmgetarch;uname -a;~/nco/autobld/config.guess
FREEBSD
FreeBSD usf-cf-x86-freebsd-1 4.6-STABLE FreeBSD 4.6-STABLE #9: Tue Aug 20 12:33:16 PDT 2002 root@usf-cf-x86-freebsd-1:/usr/obj/usr/src/sys/GENERIC i386
gcc/g++:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
NETCDF_INC=${HOME}/include NETCDF_LIB=${HOME}/lib/${GNU_TRP} ./configure --enable-optimize-custom --prefix=${HOME} --bindir=${HOME}/bin/${GNU_TRP} --datadir=${HOME}/nco/data --libdir=${HOME}/lib/${GNU_TRP} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f config.status config.status.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo config.status.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End FREEBSD
************************************************************************
************************************************************************
Start HPPA
Status: Does not work
************************************************************************
CC=/bin/c89
CPPFLAGS=-D_HPUX_SOURCE
FC=/opt/fortran/bin/fort77
FFLAGS=-w
FLIBS=-lU77
CXX=aCC
spe169> ./pvmgetarch;uname -a;~/nco/autobld/config.guess
HPPA
HP-UX spe169 B.11.11 U 9000/800 1939057856 unlimited-user license
hppa2.0w-hp-hpux11.11
gcc/g++:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
NETCDF_INC=${HOME}/include NETCDF_LIB=${HOME}/lib/${GNU_TRP} ./configure --enable-optimize-custom --prefix=${HOME} --bindir=${HOME}/bin/${GNU_TRP} --datadir=${HOME}/nco/data --libdir=${HOME}/lib/${GNU_TRP} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End HPPA
************************************************************************
************************************************************************
Start LINUX
Status: Works
Commands for LINUX are the only ones "regularly" used after ~2010
************************************************************************
# Post upgrade requests to sysadmins at ALCF, LCRC, LLNL, NCAR, NCSA, NERSC, OLCF
# support@alcf.anl.gov # ALCF Maintainer = Robert Scott <scott@alcf.anl.gov>
# conda update nco # Anaconda Maintainer = Filipe Fernandes (github: ocefpaf)
# support@lcrc.anl.gov # LCRC Maintainer = Adam
# Tony Hoang <hoang1@llnl.gov> # LLNL
# cislhelp@ucar.edu # NCAR
# Yan Liu <yanliu@illinois.edu> # NCSA Maintainer = Yan Liu (github: yanliu-chn)
# https://nersc.service-now.com/navpage.do # NERSC Maintainer = Yun (Helen) He
# https://www.olcf.ornl.gov/support/submit-ticket # OLCF
# rc-support@pnnl.gov # PNNL Maintainer = Silvia.Hoisie@pnnl.gov ?
# Subject: Please upgrade to netCDF 4.6.1 and to NCO 4.7.4
# Request: NCO 4.7.4 was released 4/6 and contains many features of interest to your ACME users. Please upgrade the system NCO module to 4.7.4 and make that the default NCO module. Thanks!
zender@dust:~/nco$ pvmgetarch;uname -a;~/nco/autobld/config.guess
LINUX
Linux dust.ess.uci.edu 2.4.19-pre8 #1 SMP Wed May 8 10:16:29 PDT 2002 i686 unknown
i686-pc-linux-gnu
# gcc/g++ Install/update NCO in personal directories using all configure defaults:
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='gcc' CXX='g++' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories:
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='gcc' CXX='g++' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories with CMake:
# Generic when netCDF is in /usr (Ubuntu glace)
# Personal recipe last modified: 20170814
# Personal recipe last borken: 20170814
# Personal recipe last successful: 20171218
cd ~/nco;/bin/rm -f *.foo;make distclean
cd ~/nco;cmake/clean
cd ~/nco/cmake;cmake .. -DCMAKE_INSTALL_PREFIX=${HOME}
make install
# clang Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories with CMake:
# Generic when netCDF is in ~/anaconda (MacOS katabatic)
cd ~/nco;/bin/rm -f *.foo;make distclean
unset NETCDF_ROOT
export NETCDF_INC='/usr/local/opt/netcdf/include'
export NETCDF_LIB='/usr/local/opt/netcdf/lib'
cd ~/nco;cmake/clean.sh
cd ~/nco/cmake;cmake .. -DCMAKE_INSTALL_PREFIX=${HOME} -DNETCDF_INCLUDE:PATH=${NETCDF_INC} -DNETCDF_LIBRARY:FILE=${NETCDF_LIB}/libnetcdf.a -DHDF5_LIBRARY:FILE=${NETCDF_LIB}/libhdf5.a -DHDF5_HL_LIBRARY:FILE=${NETCDF_LIB}/libhdf5.a
make install
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in system directories with CMake:
# Generic when netCDF is in /usr (Ubuntu glace)
# Personal recipe last modified: 20170814
# Personal recipe last borken: 20170814
# Personal recipe last successful: 20200601
cd ~/nco/cmake
cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local
make
sudo make install
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories with CMake, when build requirements are in unusual directories:
# netCDF4/HDF5 in /usr/local
cd ~/nco/cmake
cmake .. -DCMAKE_INSTALL_PREFIX=${HOME} -DNETCDF_INCLUDE:PATH=${NETCDF_INC} -DNETCDF_LIBRARY:FILE=${NETCDF_LIB}/libnetcdf.a -DHDF5_LIBRARY:FILE=${NETCDF_LIB}/libhdf5.a -DHDF5_HL_LIBRARY:FILE=${NETCDF_LIB}/libhdf5.a # Skyglow (Fedora does not supply szip packages)
make install
# netCDF4/HDF5 in /usr/local
cd ~/nco/cmake
cmake .. -DCMAKE_INSTALL_PREFIX=${HOME} -DNETCDF_INCLUDE:PATH=${NETCDF_INC} -DNETCDF_LIBRARY:FILE=${NETCDF_LIB}/libnetcdf.a -DHDF5_LIBRARY:FILE=${NETCDF_LIB}/libhdf5.a -DHDF5_HL_LIBRARY:FILE=${NETCDF_LIB}/libhdf5.a # Glace
make install
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on acme1:
# Sysadmin upgrade request:
# Latest sysadmin-compiled module usage:
# Personal recipe last modified: 20231026 (Use ~/anaconda rather than E3SMU)
# Personal recipe last borken: 20231026
# Most recent build error: 20231019 "configure: error: cannot find netCDF library"
# Personal recipe last successful: 20240328
# NB: aims4 and acme1 only accept connections from whitelisted domains (e.g., uci.edu)
cd ~/nco;/bin/rm -f *.foo;make distclean
# NB: Necessary to explicitly specify NETCDF_BIN and NETCDF_LIB. NETCDF_ROOT may be borken.
# 20220104 NB: ANTLR_ROOT in ${HOME} is only used at compile-time, not run-time
cd ~/nco;ANTLR_ROOT=${HOME} CC='gcc' CPPFLAGS='-I/home/zender1/anaconda/include' CXX='g++' LDFLAGS='-L/home/zender1/anaconda/lib' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ 20201208 Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on andes:
# Sysadmin upgrade request: https://www.olcf.ornl.gov/support/submit-ticket
# Latest ticket to build NCO: 381695 on 20180413
# Latest sysadmin-compiled module usage: module load netcdf-c/4.7.4 nco/4.9.3 # 20201208
# Personal recipe last modified: 20240221 (fix E3SMU paths, use anaconda, not bld/Makefile)
# Personal recipe last borken: 20231129 /gpfs/alpine/cli115/proj-shared/e3sm-unified/base/envs/e3sm_unified_1.9.1_login/lib/libnetcdf.so: undefined reference to `H5Pset_dxpl_mpio'
# Personal recipe last successful: 20240220
export LINUX_CC='gcc -std=c99 -pedantic -D_DEFAULT_SOURCE'
export LINUX_CXX='g++ -std=c++11'
export LINUX_FC='gfortran'
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/ccs/proj/cli115/software/e3sm-unified/base/envs/e3sm_unified_latest/lib
export NETCDF_ROOT=/ccs/proj/cli115/software/e3sm-unified/base/envs/e3sm_unified_latest
export PATH=${PATH}:/ccs/proj/cli115/software/e3sm-unified/base/envs/e3sm_unified_latest/bin
cd ~/nco;git reset --hard origin/master
cd ~/nco;CC=${LINUX_CC} CXX=${LINUX_CXX} NETCDF_ROOT=${HOME}/anaconda ./configure --disable-ccr --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# cd ~/nco/bld;make ANTLR_ROOT=${HOME} ANTLR_LIB=${MY_LIB_DIR} NETCDF_ROOT=${NETCDF_ROOT} OPTS=D OMP=Y allinone;cd -
# !Andes
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on blues/anvil
# LCRC uses Spack module written and tested by Adam Stewart: https://github.com/LLNL/spack/pull/4370/files
# spack install --run-tests nco%gcc ^netcdf@4.4.0
# Sysadmin upgrade request: support@lcrc.anl.gov
# Latest ticket to build NCO: AREQ0215917 on 20180413
# Latest sysadmin-compiled module usage:
# Personal recipe last modified: 20200618
# Personal recipe last borken: 20200618
# Personal recipe last successful: 20200905
# Fails to link to system-installed udunits...why?
# nm -a /soft/udunits/2.1.21/lib/libudunits2.a | grep ut_read_xml
cd ~/nco;/bin/rm -f *.foo;make distclean
cd ~/nco;ANTLR_ROOT=${HOME} CC='gcc' CXX='g++' NETCDF_ROOT='/soft/spack-0.10.0/opt/spack/linux-centos6-x86_64/gcc-5.3.0/netcdf-4.4.1.1-2dtwbu4ojkwj5tqd4uqvomnu6ecmh6tx' UDUNITS2_PATH=${HOME} ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# !Blues
# gcc/g++ 20171013 Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on cheyenne:
# Sysadmin upgrade request: cislhelp@ucar.edu # NCAR Maintainer = Pat Nichols
# Latest ticket to build NCO: 216373 on 20180413
# Latest sysadmin-compiled module usage: module load netcdf/4.6.1 module load nco/4.7.4 # 20180417
# Personal recipe last modified: 20190813
# Personal recipe last borken: 20190812 (antlr needed GCC 9.1.0 recompile)
# Personal recipe last successful: 20231103
# Cheyenne GNU:
module purge
module load ncarenv gnu/9.1.0 ncarcompilers mpt netcdf/4.6.3
module add gnu/9.1.0
module add netcdf/4.6.3
module add mpt
export LINUX_CXX='g++ -std=c++11'
export PATH=${PATH}:/opt/pbs/bin # needed for qsub
export PATH=${PATH}:/glade/u/apps/ch/opt/netcdf/4.6.3/gnu/9.1.0/bin # needed for ncgen
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/glade/u/apps/ch/opt/netcdf/4.6.3/gnu/9.1.0/lib:/glade/u/apps/ch/opt/udunits/2.2.26/gnu/9.1.0/lib:/glade/u/apps/ch/opt/gsl/2.4/gnu/6.3.0/lib # needed to run NCO
cd ~/nco;/bin/rm -f *.foo;make distclean
cd ~/nco;git reset --hard origin/master
cd ~/nco/bld;make ANTLR_ROOT=${HOME} GSL_ROOT='/glade/u/apps/ch/opt/gsl/2.4/gnu/6.3.0' GSL_INC='/glade/u/apps/ch/opt/gsl/2.4/gnu/6.3.0/include' SL_LIB='/glade/u/apps/ch/opt/gsl/2.4/gnu/6.3.0/lib' NETCDF_ROOT='/glade/u/apps/ch/opt/netcdf/4.6.3/gnu/9.1.0' UDUNITS_INC='/glade/u/apps/ch/opt/udunits/2.2.26/gnu/9.1.0/include' UDUNITS_LIB='/glade/u/apps/ch/opt/udunits/2.2.26/gnu/9.1.0/lib' OPTS=D allinone;cd -
# !Cheyenne
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on Chrysalis
# LCRC uses Spack module written and tested by Adam Stewart: https://github.com/LLNL/spack/pull/4370/files
# spack install --run-tests nco%gcc ^netcdf@4.4.0
# Sysadmin upgrade request: support@lcrc.anl.gov
# Latest ticket to build NCO: AREQ0215917 on 20180413
# Latest sysadmin-compiled module usage: module load netcdf-c/4.7.4-a4uk6zy # gcc netCDF 4.7.4
# Personal recipe last modified: 20231206 (define NETCDF_ROOT once, in configure.eg)
# Personal recipe last borken: 2024326 "checking for netcdf.h... yes; checking for nc_open in -lnetcdf... no"
# Personal recipe last successful: 20231206
cd ~/nco;/bin/rm -f *.foo;make distclean
# Default as of 20210924 is to build with Anaconda netCDF
# Default as of 20230425 is to build with Anaconda gcc/g++
cd ~/nco;CC=${LINUX_CC} CXX=${LINUX_CXX} NETCDF_ROOT="${HOME}/anaconda" ./configure --disable-ccr --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# !Chrysalis
# Compy with GNU compilers (default from 20221216--present)
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on compy using GCC
# https://acme-climate.atlassian.net/wiki/spaces/ED/pages/928973795/CompyMcNodeFace+-+E3SM+RGMA+ESMD+dedicated+system+at+PNNL
# Sysadmin upgrade request: rc-support@pnnl.gov # PNNL Maintainer = Tim Carlson ?
# Latest ticket to build NCO: 20190525 ICS-40n99 (closed in 1 day!)
# Latest sysadmin-compiled module usage: module add nco # 20190524 default version is 4.7.9
# Personal recipe last modified: 20230917 (use conda gcc/g++ compilers so new libnetcdf links to C++ to resolve libicuuc dependencies)
# Personal recipe last borken: 20231031 unable to link to conda libnetcdf due to GLIBC_PRIVATE errors. Seems to use /usr/bin/ld instead of conda? 20240221 error: cannot find netCDF library
# Personal recipe last successful: 20230917
module purge
cd ~/nco;CC=${LINUX_CC} CXX=${LINUX_CXX} NETCDF_ROOT=${HOME}/anaconda ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
cd ~/nco;ANTLR_ROOT=${HOME} CC='gcc' CXX='g++' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# !Compy (GNU)
# Compy with Intel compilers (default from 20210104--20221215)
# Personal recipe last modified: 20220919
# Personal recipe last borken: 20220919
# Personal recipe last successful: 20221128
source /share/apps/intel/2020/compilers_and_libraries_2020.0.166/linux/bin/compilervars.sh intel64 # Compy
module purge
module load intel/20.0.0
module load intelmpi/2020 # Required for ncclimo/ncremap in MPI-mode
module load netcdf/4.6.3
#module load mkl/2020 # Does not hurt but not necessary?
cd ~/nco;/bin/rm -f *.foo;make distclean
cd ~/nco;ANTLR_ROOT=${HOME} CC='icc' CXX='icpc' LDFLAGS='-L/lib64 -limf -lirc' NETCDF_INC='/share/apps/netcdf/4.6.3/intel/20.0.0/include' NETCDF_LIB='/share/apps/netcdf/4.6.3/intel/20.0.0/lib' UDUNITS2_PATH='/share/apps/udunits/2.2.26' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1 # works
cd ~/nco;ANTLR_ROOT=${HOME} CC='icx -static-intel -qopenmp-link=static' CXX='icx -static-intel -qopenmp-link=static' LDFLAGS='-L/usr/lib64 -L/lib64' NETCDF_INC='/share/apps/netcdf/4.6.3/intel/20.0.0/include' NETCDF_LIB='/share/apps/netcdf/4.6.3/intel/20.0.0/lib' UDUNITS2_PATH='/share/apps/udunits/2.2.26' ./configure --disable-shared --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1 # fails with ld: cannot find -lm but -lm is not necessary and removing it fixes the issue
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
# !Compy (Intel)
# gcc/g++ 20171013 Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on derecho:
# Sysadmin upgrade request: cislhelp@ucar.edu # NCAR Maintainer = Pat Nichols
# Latest ticket to build NCO: 216373 on 20180413
# Latest sysadmin-compiled module usage: module load netcdf/4.9.2 module load nco/5.1.6 # 20240107
# Personal recipe last modified: 20240107 (add -lgslcblas to bld/Makefile)
# Personal recipe last borken: 20240107 (NCO base works, ncap2 unable to link to antlr)
# Personal recipe last successful: 20231103
# Derecho GNU:
module purge
module load ncarenv gcc ncarcompilers netcdf udunits
export LINUX_CXX='g++ -std=c++11'
export PATH=${PATH}:/opt/pbs/bin # needed for qsub
# 20240207 Derecho paths may all need to be changed from 23.06 to 23.09
export PATH=${PATH}:/glade/u/apps/derecho/23.06/spack/opt/spack/netcdf/4.9.2/gcc/12.2.0/ok4t/bin # needed for ncgen
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/glade/u/apps/derecho/23.06/spack/opt/spack/netcdf/4.9.2/gcc/12.2.0/ok4t/lib:/glade/u/apps/derecho/23.06/spack/opt/spack/udunits/2.2.28/gcc/12.2.0/vls2/lib # needed to run NCO
cd ~/nco;/bin/rm -f *.foo;make distclean
cd ~/nco;git reset --hard origin/master
cd ~/nco/bld;make ANTLR_ROOT=/glade/u/apps/derecho/23.06/opt GSL_ROOT='/glade/u/apps/ch/opt/gsl/2.7/gnu/12.1.0' GSL_INC='/glade/u/apps/ch/opt/gsl/2.7/gnu/12.1.0/include' GSL_LIB='/glade/u/apps/ch/opt/gsl/2.7/gnu/12.1.0/lib' NETCDF_ROOT='/glade/u/apps/derecho/23.06/spack/opt/spack/netcdf/4.9.2/gcc/12.2.0/ok4t' UDUNITS_INC='/glade/u/apps/derecho/23.06/spack/opt/spack/udunits/2.2.28/gcc/12.2.0/vls2/include' UDUNITS_LIB='/glade/u/apps/derecho/23.06/spack/opt/spack/udunits/2.2.28/gcc/12.2.0/vls2/lib' OPTS=D allinone;cd -
# !Derecho
# gcc/g++ 20201208 Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on Frontier:
# Sysadmin upgrade request: https://www.olcf.ornl.gov/support/submit-ticket
# Latest ticket to build NCO: 381695 on 20180413
# Latest sysadmin-compiled module usage: module load netcdf-c/4.7.4 nco/5.0.1 # 20230831
# Personal recipe last modified: 20230831 (original version)
# Personal recipe last borken: 20240216
# ../src/nco/nco_flt.c: In function ‘nco_qnt_mtd’: error: too many decimal points in number in expansion of macro ‘NCO_VERSION’
# Personal recipe last successful: 20231129
module purge
export LINUX_CC='gcc -std=c99 -pedantic -D_DEFAULT_SOURCE'
export LINUX_CXX='g++ -std=c++11'
export LINUX_FC='gfortran'
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/anaconda/lib
export NETCDF_ROOT=${HOME}/anaconda
export PATH=${PATH}:${HOME}/anaconda/bin
#export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/ccs/proj/cli115/software/e3sm-unified/base/envs/e3sm_unified_latest/lib
#export NETCDF_ROOT=/ccs/proj/cli115/software/e3sm-unified/base/envs/e3sm_unified_latest
#export PATH=${PATH}:/ccs/proj/cli115/software/e3sm-unified/base/envs/e3sm_unified_latest/bin
cd ~/nco;git reset --hard origin/master
cd ~/nco/bld;make ANTLR_ROOT=${HOME}/anaconda ANTLR_LIB=${HOME}/anaconda NETCDF_ROOT=${HOME}/anaconda OPTS=D OMP=Y allinone;cd -
cd ~/nco/bld;make ANTLR_ROOT=${HOME} ANTLR_LIB=${MY_LIB_DIR} NETCDF_ROOT='/ccs/proj/cli115/software/e3sm-unified/base/envs/e3sm_unified_latest' OPTS=D OMP=Y allinone;cd -
# !Frontier
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on Perlmutter with GNU:
# Sysadmin upgrade request: https://nersc.service-now.com/navpage.do # NERSC Maintainer = Yun (Helen) He
# Latest ticket to build NCO: INC0118469 on 20180413
# Latest sysadmin-compiled module usage:
# Personal recipe last modified: 20240118 (remove gcc/11.2.0, update to cray-hdf5/1.12.2.9 cray-netcdf/4.9.0.9)
# Personal recipe last borken: 20231103
# Personal recipe last successful: 20240214
module load PrgEnv-gnu
module load cray-hdf5/1.12.2.9
module load cray-netcdf/4.9.0.9
export HDF5_DISABLE_VERSION_CHECK=1
export HDF5_USE_FILE_LOCKING=FALSE
cd ~/nco;/bin/rm -f *.foo;make distclean
cd ~/nco;ANTLR_ROOT=${HOME} ANTLR_LIB=${HOME}/lib_perlmutter CC='gcc' CXX='g++' NETCDF_DIR='/opt/cray/pe/netcdf/4.9.0.9/gnu/12.3' NETCDF_INC='/opt/cray/pe/netcdf/4.9.0.9/gnu/12.3/include' NETCDF_LIB='/opt/cray/pe/netcdf/4.9.0.9/gnu/12.3/lib' NETCDF_ROOT='/opt/cray/pe/netcdf/4.9.0.9' UDUNITS2_ROOT=${HOME} ./configure --prefix=${HOME} --bindir=${HOME}/bin_perlmutter --datadir=${HOME}/nco/data --libdir=${HOME}/lib_perlmutter --mandir=${HOME}/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# !Perlmutter
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on greenplanet
# Personal recipe last modified: 20190526
# Personal recipe last borken: 20190526
# Personal recipe last successful: 20190526 (no antlr or ncap2)
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='gcc' CXX='g++' LDFLAGS='-L/lib64' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ 20210215 Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on hpc3:
# Sysadmin upgrade request:
# Latest ticket to build NCO: never
# Latest sysadmin-compiled module usage: module load nco/4.9.6/gcc.8.4.0 # 20210215
# Personal recipe last modified: 20210215
# Personal recipe last borken: 20210215
# Personal recipe last successful: 20210215
cd ~/nco;git reset --hard origin/master
module load gcc/8.4.0
CC='gcc' CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX='g++' CXXFLAGS='-Wall' NETCDF_INC="${HOME}/anaconda/include" NETCDF_LIB="${HOME}/anaconda/lib" ./configure --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# 20160421: gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on roger:
# Sysadmin upgrade request: Yan Liu <yanliu@illinois.edu>
# Latest sysadmin-compiled module usage: module load nco/4.6.5 # 20170315
# Personal recipe last modified: 20170424
# Personal recipe last borken: 20170424
# Personal recipe last successful: 20170424
module load netcdf/4.4.0
module load udunits
cd ~/nco;/bin/rm -f *.foo;make distclean
cd ~/nco;ANTLR_ROOT=${HOME} ANTLR_LIB=${HOME}/lib CC='gcc' CXX='g++' UDUNITS2_PATH='/sw/udunits-2.1.24' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Sysadmins: use this to install/update NCO in /opt/nco
cd ~/nco;/bin/rm -f *.foo;make distclean
./configure --disable-shared --enable-optimize-custom --prefix=/opt/nco > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
sudo make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Sysadmins: use this to install/update NCO in /usr/local
cd ~/nco;/bin/rm -f *.foo;make distclean
./configure --disable-shared --enable-optimize-custom --prefix=/usr/local > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
sudo make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# g++/g++ Zender uses this to compile NCO with g++ (not recommended!) instead of gcc
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='g++' CXX='g++' ./configure --disable-shared --disable-udunits --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Zender uses this to compile NCO with GCC and netCDF4
# --enable-optimize-custom fails with netCDF4 which shadows "access" variable
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='gcc' CXX='g++' NETCDF4_ROOT='/usr/local/netcdf4' ./configure --enable-netcdf4 --enable-dap-netcdf --disable-shared --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
gcc/g++ Developers use --enable-maintainer-mode to verify auto-tools work correctly, and to mandate rebuilding of "special files" (ncap_yacc.c, ncap_lex.c) correctly:
(requires complete, up-to-date, GNU development toolchain):
cd ~/nco;/bin/rm -f *.foo;make distclean
aclocal # Create aclocal.m4 from acinclude.m4
autoheader # Create config.h.in from configure.ac
automake --foreign # Create Makefile.in from Makefile.am
autoconf # Create ./configure from ./configure.ac
# Debugging
./configure --disable-shared --enable-debug-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Production
./configure --disable-shared --enable-maintainer-mode --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
como:
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='como --c99' CXX='como' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
icc:
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='icc' CPPFLAGS="-I${IA32ROOT}/include -I${IA32ROOT}/include/c++" CXX='icpc' LDFLAGS="-L${IA32ROOT}/lib" ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
pathcc:
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='pathcc' CXX='pathCC' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
pgcc:
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='pgcc' CXX='pgCC' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
pgcc on mpc64.nacs.uci.edu (C-shell environment):
cd ${HOME}/nco;/bin/rm -f *.foo;make distclean
# Bash
ANTLR_ROOT='/software/antlr' CC='pgcc' CXX='pgCC' UDUNITS2_PATH='/software/udunits' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man >&! nco.configure.foo
# Csh
setenv ANTLR_ROOT '/software/antlr';setenv CC 'pgcc';setenv CXX 'pgCC';setenv UDUNITS2_PATH '/software/udunits';./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man >&! nco.configure.foo
# env
env ANTLR_ROOT='/software/antlr' CC='pgcc' CXX='pgCC' PATH=${PATH}\:'/software/netcdf/bin'\:'/software/antlr/bin' UDUNITS2_PATH='/software/udunits' ./configure --disable-shared --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man >&! nco.configure.foo
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# Old machines:
# gcc/g++ Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on pileus:
cd ~/nco;/bin/rm -f *.foo;make distclean
ANTLR_ROOT=${HOME} CC='gcc' CXX='g++' NETCDF_ROOT='/opt/ACME/uvcdat-2.2-build/install/Externals' UDUNITS2_PATH='/opt/ACME/uvcdat-2.2-build/install/Externals' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End LINUX
************************************************************************
************************************************************************
Begin NETCDF4
************************************************************************
To build NCO with netCDF4, we require changes from the default process:
- Build HDF5 libraries and install them as you normally would, e.g., in /usr/local
- Identify the installation (--prefix=) directory for netCDF4.
Keep this separate from the netCDF3 installation because the netCDF4
library is still called libnetcdf.a and until netCDF4 is debugged,
you'll want both netCDF3 and netCDF4 around.
The configure options to use for netCDF4 are:
./configure --enable-netcdf4 --enable-dap-netcdf --disable-shared \
NETCDF4_ROOT=/where/you/unpacked/netcdf4
Alternatively, you can export an environment variable NETCDF4_ROOT to
the same value and the configure script will pick it up.
- As of 20051129, building NCO with netCDF4 and MPI does not work
************************************************************************
End NETCDF4
************************************************************************
cd
/bin/rm -r -f nco
git clone git@github.com:nco/nco.git
cd nco
<configure>
make install
cd ~/nco/data
make
cd ~/nco
************************************************************************
Start LINUXAMD64
Status: Appears to work. Make sure to compile netCDF and DAP with CFLAGS+='-fPIC'
************************************************************************
zender@sand:~/nco/bld$ ./pvmgetarch;uname -a;~/nco/autobld/config.guess
LINUXAMD64
Linux sand.ess.uci.edu 2.6.8.1-4-amd64-generic #1 Thu Dec 16 11:44:05 UTC 2004 x86_64 GNU/Linux
x86_64-unknown-linux-gnu
# gcc/g++ Regular (non-root) users build NCO with system-supplied netCDF and install in your own directories
# Zender uses this on MACOS sastrugi/firn as well
cd ~/nco;/bin/rm -f *.foo;make distclean
# Pre-20180729 (antlr from macports seems to have stopped linking, so build it from scratch)
CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Firn 20180729 (works)
ANTLR_ROOT=${HOME} CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Sastrugi 20180729 (works with gcc, clang, and icc)
ANTLR_ROOT=${HOME} CC=${LINUX_CC} CFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' CXX=${LINUX_CXX} CXXFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Sastrugi 20201215 with CCR, 20210608 update: works with Hombrew, not with MacPorts
ANTLR_ROOT=${HOME} CC=${LINUX_CC} CFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' CXX=${LINUX_CXX} CXXFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' ./configure --enable-ccr --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Sastrugi 20240429
ANTLR_ROOT=${HOME} CC=${LINUX_CC} CFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' CPPFLAGS='-I/opt/netcdf/include -I/opt/homebrew/include' CXX=${LINUX_CXX} CXXFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' LDFLAGS='-L/opt/netcdf/lib -L/opt/homebrew/lib' NETCDF_ROOT=/opt/netcdf ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Spectral 20220617 with netCDF-dev and no CCR
ANTLR_ROOT=${HOME} CC=${LINUX_CC} CFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' CPPFLAGS='-I/opt/netcdf/include -I/opt/homebrew/include' CXX=${LINUX_CXX} CXXFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' LDFLAGS='-L/opt/netcdf/lib -L/opt/homebrew/lib' NETCDF_ROOT=/opt/netcdf ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Spectral 20220624 with netCDF-dev and CCR
ANTLR_ROOT=${HOME} CC=${LINUX_CC} CFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' CPPFLAGS='-I/opt/netcdf/include -I/opt/homebrew/include' CXX=${LINUX_CXX} CXX=${LINUX_CXX} CXXFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' LDFLAGS='-L/opt/netcdf/lib -L/opt/homebrew/lib' NETCDF_ROOT=/opt/netcdf ./configure --enable-ccr --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Spectral 20220713 old netCDF, no CCR
ANTLR_ROOT=${HOME} CC=${LINUX_CC} CFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' CXX=${LINUX_CXX} CXXFLAGS='-g -Wall -UNCO_ABORT_ON_ERROR' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Rigb 20190912 (fxm)
ANTLR_ROOT=${HOME} CC=${LINUX_CC} CFLAGS='' CXX=${LINUX_CXX} CXXFLAGS='' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# Imua 20230509
CC='gcc' CFLAGS='-I/usr/include/udunits2' CXX='g++' CXXFLAGS='-I/usr/include/udunits2' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Sysadmins use/modify this to install/update NCO in /usr/local, based on netCDF4 also in /usr/local (works on givre 20100727):
cd ~/nco;/bin/rm -f *.foo;make distclean
CPPFLAGS='-DHAVE_NETCDF4_H -I/usr/local/include' LDFLAGS='-L/usr/local/lib' ./configure --prefix='/usr/local' --enable-ncap2 --enable-netcdf4 > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
sudo make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Zender uses this to debug NCO with pre-built (i.e., yum/dnf install'd or aptitude install'd) netCDF in /usr (glace)
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' NETCDF_INC='/usr/include' NETCDF_LIB='/usr/lib' ./configure --enable-debug-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Zender uses this to debug NCO with custom-install netCDF (and ESMF) binaries in /usr/local (grele)
# Personal recipe last modified: 20200601
# Personal recipe last borken: 20200601
# Personal recipe last successful: 20200601
# cd ~/nco/bld;make GSL=Y OMP=Y OPTS=D UDUNITS=Y allinone
# gcc/g++ Zender uses this to debug NCO with pre-built netCDF binaries in /usr (skyglow, e3sm.ess.uci.edu)
cd ~/nco;/bin/rm -f *.foo;make distclean
# Pre-20170810 GCC7 dies on nco_yyget_leng() prototype with --enable-debug-custom option
#CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' NETCDF_INC='/usr/include' NETCDF_LIB='/usr/lib' ./configure --enable-debug-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# 20170810 Produce core dumps and symbols, turn-on -Wall, without using --enable-debug-custom
#CC='gcc' CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX='g++' CXXFLAGS='-Wall' NETCDF_INC='/usr/include' NETCDF_LIB='/usr/lib' ./configure --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# 20191217 Produce core dumps and symbols, turn-on -Wall, without using --enable-debug-custom
CC='gcc' CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX='g++' CXXFLAGS='-Wall' NETCDF_INC='/usr/local/include' NETCDF_LIB='/usr/local/lib' ./configure --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# 20210511 Use updated netCDF from Anaconda (failed to find UDUNITS then broke when upgrading anaconda from gcc 9.3 to 11.2, because system still stuck at 9.3?)
CC=${LINUX_CC} CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX=${LINUX_CXX} CXXFLAGS='-Wall' NETCDF_ROOT="${HOME}/anaconda" UDUNITS2_PATH="${HOME}/anaconda/include" ./configure --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# 20210511 with CCR: borken due to missing ccr.h
CC=${LINUX_CC} CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX=${LINUX_CXX} CXXFLAGS='-Wall' NETCDF_ROOT="${HOME}/anaconda" UDUNITS2_PATH="${HOME}/anaconda/include" ./configure --enable-ccr --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
# 20210520 with CCR: borken due to unresolved -lhdf5 -lhdf5_hl -lnetcdff which must be manually linked
CC=${LINUX_CC} CFLAGS="-Wall -UNCO_ABORT_ON_ERROR -I${HOME}/include" CXX=${LINUX_CXX} CXXFLAGS="-Wall -I${HOME}/include" LDFLAGS="-lhdf5 -lhdf5_hl -lnetcdff" NETCDF_ROOT="${HOME}/anaconda" UDUNITS2_PATH="${HOME}/anaconda/include" ./configure --enable-ccr --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Zender uses this to debug NCO with custom-built netCDF binaries in /usr/local with clang (frazil)
cd ~/nco;/bin/rm -f *.foo;make distclean
# 20170810 Produce core dumps and symbols, turn-on -Wall, without using --enable-debug-custom
CC=${LINUX_CC} CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX=${LINUX_CXX} CXXFLAGS='-Wall' NETCDF_INC='/usr/local/include' NETCDF_LIB='/usr/local/lib' ./configure --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# gcc/g++ Zender uses this to debug NCO with system netCDF binaries with clang (frazil)
cd ~/nco;/bin/rm -f *.foo;make distclean
CC=${LINUX_CC} CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX=${LINUX_CXX} CXXFLAGS='-Wall' NETCDF_INC='/usr/include' NETCDF_LIB='/usr/lib64' ./configure --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
# g++/g++ Zender uses this to compile NCO with _g++_ (not recommended for normal use)
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='g++' CFLAGS='-Wall -UNCO_ABORT_ON_ERROR' CXX='g++' CXXFLAGS='-Wall' NETCDF_INC="${HOME}/anaconda/include" NETCDF_LIB="${HOME}/anaconda/lib" ./configure --enable-ccr --enable-debug-symbols --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
pgcc/pgCC:
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='pgcc' CFLAGS='-fast -fPIC' CXX='pgCC' CXXFLAGS='-fast -fPIC' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
/bin/cp -f libtool nco.libtool.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.libtool.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End LINUXAMD64
************************************************************************
************************************************************************
Start LINUXALPHA
Status: Appears to work (of course C++ compiler requires valarray)
************************************************************************
zender@ess1:/usr/home/zender/nco$ pvmgetarch;uname -a;~/nco/autobld/config.guess
LINUXALPHA
Linux ess1.ess.uci.edu 2.2.15 #1 Thu May 18 17:22:29 EDT 2000 alpha unknown
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
./configure --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
zender@usf-cf-alpha-linux-1:~/nco/bld$ ./pvmgetarch;uname -a;~/nco/autobld/config.guess
LINUXALPHA
Linux usf-cf-alpha-linux-1 2.4.17 #1 SMP Fri Jan 4 13:37:30 PST 2002 alpha unknown
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
NETCDF_INC=${HOME}/include NETCDF_LIB=${HOME}/lib/${GNU_TRP} ./configure --enable-optimize-custom --prefix=${HOME} --bindir=${HOME}/bin/${GNU_TRP} --datadir=${HOME}/nco/data --libdir=${HOME}/lib/${GNU_TRP} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End LINUXALPHA
************************************************************************
************************************************************************
Start LINUXPPC
Status: tst fails to find in.nc
************************************************************************
zender@usf-cf-ppc-linux-1:~/nco/bld$ ./pvmgetarch;uname -a;~/nco/autobld/config.guess
UNKNOWN
Linux usf-cf-ppc-linux-1 2.2.17-pre1 #2 SMP Fri Jun 16 12:39:25 MDT 2000 ppc unknown
gcc/g++:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
NETCDF_INC=${HOME}/include NETCDF_LIB=${HOME}/lib/${GNU_TRP} ./configure --enable-optimize-custom --prefix=${HOME} --bindir=${HOME}/bin/${GNU_TRP} --datadir=${HOME}/nco/data --libdir=${HOME}/lib/${GNU_TRP} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End LINUXPPC
************************************************************************
************************************************************************
Start LINUXSPARC64
Status: Appears to build correctly
************************************************************************
zender@usf-cf-sparc-linux-1:~/nco/bld$ ./pvmgetarch;uname -a;~/nco/autobld/config.guess
UNKNOWN
Linux usf-cf-sparc-linux-1 2.4.18 #2 Thu Apr 11 14:37:17 EDT 2002 sparc64 unknown
gcc/g++:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
NETCDF_INC=${HOME}/include NETCDF_LIB=${HOME}/lib/${GNU_TRP} ./configure --enable-optimize-custom --prefix=${HOME} --bindir=${HOME}/bin/${GNU_TRP} --datadir=${HOME}/nco/data --libdir=${HOME}/lib/${GNU_TRP} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End LINUXSPARC64
************************************************************************
************************************************************************
Start MACOS
Status: works. rorik Thu Oct 30 12:09:15 AKST 2003
MACOS requires netCDF3.x be built with CFLAGS=-fno-common to link with NCO
This may also be the case for netCDF4.
NCO's configure detects MACOS adds '-fno-common' automatically to CFLAGS
MACOS also requires '--disable-shared' on the configure line
************************************************************************
zender@cg1:~/nco/bld$ ~/sh/pvmgetarch;uname -a;~/nco/autobld/config.guess
MACOS
Darwin cg1.calit2.uci.edu 8.2.0 Darwin Kernel Version 8.2.0: Fri Jun 24 17:46:54 PDT 2005; root:xnu-792.2.4.obj~3/RELEASE_PPC Power Macintosh powerpc
powerpc-apple-darwin8.2.0
gcc/g++:
export PVM_ARCH=`~/nco/bld/pvmgetarch`
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
NETCDF_INC=${HOME}/include NETCDF_LIB=${HOME}/lib ./configure --disable-regex --disable-shared --prefix=${HOME} --bindir=${HOME}/bin --datadir=${HOME}/nco/data --libdir=${HOME}/lib --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End MACOS
************************************************************************
************************************************************************
Start SGIMP64
Status: -LANG:std not passed to final CC link command for tst.o
************************************************************************
zender@krein:~/nco$ pvmgetarch;uname -a;~/nco/autobld/config.guess
SGIMP64
IRIX64 tempest 6.5 07080049 IP35 mips
mips-sgi-irix6.5
cc/CC ABI64:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='cc -c99' CFLAGS='-64 -mips4' CXX='CC -64 -LANG:std' CXXFLAGS='-64 -mips4 -LANG:std' LDFLAGS='-64 -LANG:std' NETCDF_INC='/usr/local/include' UDUNITS2_PATH='/contrib/udunits-1.12.4' ./configure --disable-ncoxx --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
cc/CC ABI32:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='cc -c99' CXX='CC' CXXFLAGS='-LANG:std' LDFLAGS='-LANG:std' NETCDF_INC='/usr/local/include' NETCDF_LIB='/usr/local/lib32/r4i4' UDUNITS2_PATH='/contrib' ./configure --disable-ncoxx --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
gcc/g++ ABI32:
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.foo;make distclean
CC='gcc' CXX='g++' NETCDF_INC='/usr/local/include' ./configure --disable-ncoxx --enable-optimize-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.foo 2>&1
/bin/cp -f config.log nco.config.log.foo
make clean;make > nco.make.foo 2>&1
make check >> nco.make.foo 2>&1
make install >> nco.make.foo 2>&1
scp nco.configure.foo nco.config.log.foo nco.make.foo dust.ess.uci.edu:Sites/nco/rgr
************************************************************************
End SGIMP64
************************************************************************
************************************************************************
Start SUNMP
Status:
Works fine with native compilers
************************************************************************
zender@flagstaff:~/nco$ pvmgetarch;uname -a;~/nco/autobld/config.guess
SUNMP
SunOS goldhill 5.9 Generic_117171-12 sun4u sparc SUNW,Ultra-60
sparc-sun-solaris2.9
For ABI=64:
cc/CC: