You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
But, I am getting an error. I am not sure what it is about:
Traceback (most recent call last):
File "/nas/longleaf/home/caroe/.local/bin/remora", line 8, in
sys.exit(run())
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/main.py", line 71, in run
cmd_func(args)
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/parsers.py", line 290, in run_dataset_prepare
sig_map_refiner = SigMapRefiner(
File "", line 17, in init
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/refine_signal_map.py", line 294, in post_init
self.load_kmer_table()
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/refine_signal_map.py", line 230, in load_kmer_table
self.kmer_len = len(kmer_fp.readline().split()[0])
IndexError: list index out of range
I would greatly appreciate your input.
Kind regards,
CA
The text was updated successfully, but these errors were encountered:
Hi, I am using this command to resquiggle my RNA data:
remora dataset prepare pod5_dir file.bam --output-path mod_chunks --refine-kmer-level-table 5mer_levels_v1.txt --refine-rough-rescale --motif CG 0 --mod-base m 5mC --reverse-signal --overwrite
But, I am getting an error. I am not sure what it is about:
Traceback (most recent call last):
File "/nas/longleaf/home/caroe/.local/bin/remora", line 8, in
sys.exit(run())
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/main.py", line 71, in run
cmd_func(args)
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/parsers.py", line 290, in run_dataset_prepare
sig_map_refiner = SigMapRefiner(
File "", line 17, in init
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/refine_signal_map.py", line 294, in post_init
self.load_kmer_table()
File "/nas/longleaf/home/caroe/.local/lib/python3.10/site-packages/remora/refine_signal_map.py", line 230, in load_kmer_table
self.kmer_len = len(kmer_fp.readline().split()[0])
IndexError: list index out of range
I would greatly appreciate your input.
Kind regards,
CA
The text was updated successfully, but these errors were encountered: