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This repository has been archived by the owner on Oct 25, 2021. It is now read-only.
Hello Everyone
Can somebody help me with the following error in PSV:
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/snakemake/init.py", line 593, in snakemake
snakefile, overwrite_first_rule=True, print_compilation=print_compilation
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/snakemake/workflow.py", line 1083, in include
if is_local_file(snakefile):
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/snakemake/common.py", line 65, in is_local_file
from smart_open import parse_uri
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/smart_open/init.py", line 1, in
from .smart_open_lib import *
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/smart_open/smart_open_lib.py", line 72, in
import smart_open.s3 as smart_open_s3
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/smart_open/s3.py", line 3, in
import boto3
ModuleNotFoundError: No module named 'boto3'
thank you very much.
The text was updated successfully, but these errors were encountered:
Don't use sudo in a virtual environment because it ignores the environment's variables and therefore sudo pip refers to your global pip installation.
So with your environment activated, rerun pip install boto3 but without sudo.
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Hello Everyone
Can somebody help me with the following error in PSV:
thank you very much.
The text was updated successfully, but these errors were encountered: