/
NAMESPACE
119 lines (118 loc) · 2.27 KB
/
NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method("!=",gEdge)
S3method("!=",gGraph)
S3method("!=",gNode)
S3method("+",Junction)
S3method("+",gGraph)
S3method("==",gEdge)
S3method("==",gGraph)
S3method("==",gNode)
S3method("[",Junction)
S3method("[",gEdge)
S3method("[",gGraph)
S3method("[",gNode)
S3method("[",gWalk)
S3method(c,Junction)
S3method(c,gEdge)
S3method(c,gGraph)
S3method(c,gNode)
S3method(c,gWalk)
S3method(dim,gGraph)
S3method(length,Junction)
S3method(length,gEdge)
S3method(length,gGraph)
S3method(length,gNode)
S3method(length,gWalk)
S3method(merge,Junction)
S3method(split,gGraph)
S3method(sum,gGraph)
S3method(unique,Junction)
export(Junction)
export(Rcplex2)
export(amp)
export(balance)
export(binstats)
export(chromoplexy)
export(chromothripsis)
export(cougar2gg)
export(cov2arrow)
export(cov2arrowPGV)
export(cov2cov.js)
export(cov2csv)
export(del)
export(dunlist)
export(dup)
export(embedloops)
export(events)
export(events.to.gr)
export(fitcn)
export(fusions)
export(gEdge)
export(gG)
export(gGnome.js)
export(gGraph)
export(gNode)
export(gW)
export(gWalk)
export(gen_js_cov_PGV)
export(gen_js_coverage_files)
export(gen_js_datafiles)
export(gstat)
export(haplograph)
export(intersect.Junction)
export(intersect.gEdge)
export(intersect.gNode)
export(j.dist)
export(jJ)
export(jab2json)
export(karyotype)
export(label.runs)
export(lengths)
export(lengths.gWalk)
export(merge)
export(merge.Junction)
export(microhomology)
export(nodestats)
export(parse.js.seqlengths)
export(peel)
export(pgv)
export(phased.binstats.legacy)
export(ploidy)
export(proximity)
export(qrp)
export(ra.merge)
export(read_cmap)
export(read_xmap)
export(reciprocal)
export(refresh)
export(rel2abs)
export(setxor)
export(simple)
export(tic)
export(transplant)
exportMethods("%&%")
exportMethods("%^%")
exportMethods(lengths)
exportMethods(refresh)
exportMethods(seqinfo)
exportMethods(seqlengths)
exportMethods(seqlevels)
exportMethods(setdiff)
exportMethods(union)
exportMethods(width)
import(GenomicRanges)
import(Matrix)
import(R6)
import(data.table)
import(fishHook)
import(gTrack)
import(gUtils)
import(igraph)
import(jsonlite)
import(methods)
importFrom(RCurl,url.exists)
importFrom(VariantAnnotation,info)
importFrom(VariantAnnotation,readVcf)
importFrom(parallel,mclapply)
importFrom(reshape2,melt)
useDynLib(gGnome)