The TCGA manifest file used to download WSIs from TCGA is included. Please check this link for instructions on using this file.
The file make_tiles.py was used to extract tiles from the downloaded WSI images using OpenSlide. tile_processing.py was generously provided by Marvin Lerousseau.
Please use the link in this file to download the necessary file seg_cover_hsv_readjusted.pkl.