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Based on this uPhenotizer discussion about SGD phenotypes in the Alliance phenotype ingest format, it seems like chemicals which are listed under conditions are actually part of the phenotype. Both uPhenotizer and monarch-ingest should pull directly from Yeastmine so that the chemicals can accurately be represented as part of the phenotype.
Based on this uPhenotizer discussion about SGD phenotypes in the Alliance phenotype ingest format, it seems like chemicals which are listed under conditions are actually part of the phenotype. Both uPhenotizer and monarch-ingest should pull directly from Yeastmine so that the chemicals can accurately be represented as part of the phenotype.
Here's a link to getting the phenotypes interactively from Yeastmine, we'll need to research a little more to turn that into a download url.
https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Phenotype_Tab_New&scope=all
This url seems to work for getting straight to tsv:
https://yeastmine.yeastgenome.org/yeastmine/service/template/results?name=Phenotype_Tab_New&format=tab&size=100000
(there are about 200k being returned from that url, so maybe tossing in another zero wouldn't hurt if it doesn't complain)
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