{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":645996391,"defaultBranch":"main","name":"curate-gpt","ownerLogin":"monarch-initiative","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-05-27T00:56:51.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/5161984?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1716379158.0","currentOid":""},"activityList":{"items":[{"before":"91c177579bcc3e298500eca6fe27c28822456800","after":"0af460810c2802cc0af63bd872955aec63114c63","ref":"refs/heads/gh-pages","pushedAt":"2024-05-22T12:12:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hrshdhgd","name":"Harshad","path":"/hrshdhgd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5247075?s=80&v=4"},"commit":{"message":"Deploying to gh-pages from @ monarch-initiative/curate-gpt@2bc78793ff1ce7e6a340a314414d6c71549ac4c4 ๐Ÿš€","shortMessageHtmlLink":"Deploying to gh-pages from @ 2bc7879 ๐Ÿš€"}},{"before":"eeef2c3a303729a557c0de65251bd27c4e98cd24","after":"2bc78793ff1ce7e6a340a314414d6c71549ac4c4","ref":"refs/heads/main","pushedAt":"2024-05-22T12:09:49.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"Merge pull request #38 from monarch-initiative/gpt-4o-access\n\nAllow gpt-4o","shortMessageHtmlLink":"Merge pull request #38 from monarch-initiative/gpt-4o-access"}},{"before":null,"after":"44beb4c1b11c6faa850501f86bbe7ae0b1a1dc3e","ref":"refs/heads/gpt-4o-access","pushedAt":"2024-05-22T11:59:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"Allow gpt-4o\n\nTODO: avoid this hacky way of determining max context length for models.\n\nAlso improving way to detect labels for objects (e.g. viz in tSNE)","shortMessageHtmlLink":"Allow gpt-4o"}},{"before":"1578efc3dcd5447a62da31153f00fa89079690dc","after":"31cf525bb73039a7e3040a558c4c039bb1520f63","ref":"refs/heads/byob_embeddings","pushedAt":"2024-03-07T20:37:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Rename embeddings index() function to load()","shortMessageHtmlLink":"Rename embeddings index() function to load()"}},{"before":null,"after":"1578efc3dcd5447a62da31153f00fa89079690dc","ref":"refs/heads/byob_embeddings","pushedAt":"2024-03-07T20:01:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Add command group embeddings and add index command to put embeddings into a collection","shortMessageHtmlLink":"Add command group embeddings and add index command to put embeddings โ€ฆ"}},{"before":"3294bf735526146a65c89e87e9d4ebf16c1f4a0b","after":"eeef2c3a303729a557c0de65251bd27c4e98cd24","ref":"refs/heads/main","pushedAt":"2024-03-04T18:42:27.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"Merge pull request #22 from monarch-initiative/venomx\n\nAdding venomx dependency","shortMessageHtmlLink":"Merge pull request #22 from monarch-initiative/venomx"}},{"before":"5a24e70dbea5c814b8c4c4708c515b5998bdb2ba","after":"3294bf735526146a65c89e87e9d4ebf16c1f4a0b","ref":"refs/heads/main","pushedAt":"2024-03-04T18:42:04.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"Merge pull request #31 from monarch-initiative/jsonpath-for-indexing\n\nAdding --jsonpath option to index command.","shortMessageHtmlLink":"Merge pull request #31 from monarch-initiative/jsonpath-for-indexing"}},{"before":"ddd7f7b89fdcb189aa7349c02dc48b7e0f6351e8","after":"02b493b4f8b8705c2bbb2a65152ad5f1b8ea7a34","ref":"refs/heads/jsonpath-for-indexing","pushedAt":"2024-03-04T18:16:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"docs","shortMessageHtmlLink":"docs"}},{"before":null,"after":"ddd7f7b89fdcb189aa7349c02dc48b7e0f6351e8","ref":"refs/heads/jsonpath-for-indexing","pushedAt":"2024-03-04T18:11:45.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"Adding --jsonpath option to index command.\n\nThis allows for customizing how a JSON doc or folder of JSON docs are indexed.\n\nExample of use:\n\n curategpt -vv index -c cde_ncit --select '$.DataElementQueryResults' ../cde-harmonization/data/cadsr/from-api/context-*.json","shortMessageHtmlLink":"Adding --jsonpath option to index command."}},{"before":"eca5243e47acea44085f70528fdb8496b4042d3e","after":"93b9f0aaff4e7dae0f7e52f1f9afff7c0377fe5c","ref":"refs/heads/ortholog_recap","pushedAt":"2024-02-26T17:10:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"TODOs","shortMessageHtmlLink":"TODOs"}},{"before":null,"after":"eca5243e47acea44085f70528fdb8496b4042d3e","ref":"refs/heads/ortholog_recap","pushedAt":"2024-02-26T16:55:23.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Conflict","shortMessageHtmlLink":"Conflict"}},{"before":"e39f786700cf9eacf41bb10d076f2f796bdb8d0b","after":"c79a0f5f9cf5e6a833103e59fcb12267514029aa","ref":"refs/heads/subsumption_experiments","pushedAt":"2024-02-26T15:16:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Add notebook for subsumption experiments","shortMessageHtmlLink":"Add notebook for subsumption experiments"}},{"before":"4fdf5161a5278416f889da4ffeb82f49dc06e3e1","after":"e39f786700cf9eacf41bb10d076f2f796bdb8d0b","ref":"refs/heads/subsumption_experiments","pushedAt":"2024-02-23T21:29:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Correct path to stagedb","shortMessageHtmlLink":"Correct path to stagedb"}},{"before":"b657322db99a2229ff6a87f089a9ee58b0dfcbd0","after":"4fdf5161a5278416f889da4ffeb82f49dc06e3e1","ref":"refs/heads/subsumption_experiments","pushedAt":"2024-02-23T21:28:24.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Add notebook for subsumption experiments","shortMessageHtmlLink":"Add notebook for subsumption experiments"}},{"before":"9680d98fb04557e920394b12255b15f40ede2515","after":"b657322db99a2229ff6a87f089a9ee58b0dfcbd0","ref":"refs/heads/subsumption_experiments","pushedAt":"2024-02-15T21:15:51.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Tidy up, add documentation","shortMessageHtmlLink":"Tidy up, add documentation"}},{"before":"61888a62d31ecd3aa3a610c0d5f6da6fd07a47a9","after":"9680d98fb04557e920394b12255b15f40ede2515","ref":"refs/heads/subsumption_experiments","pushedAt":"2024-02-14T19:46:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Add arg to select root term (to avoid selecting modifier terms that aren't of interest)","shortMessageHtmlLink":"Add arg to select root term (to avoid selecting modifier terms that aโ€ฆ"}},{"before":"7ada3978c45f1fd43b6eb8e5296267c67e7060a1","after":"61888a62d31ecd3aa3a610c0d5f6da6fd07a47a9","ref":"refs/heads/subsumption_experiments","pushedAt":"2024-02-13T22:31:15.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Finish first pass of subsumption command","shortMessageHtmlLink":"Finish first pass of subsumption command"}},{"before":null,"after":"91c177579bcc3e298500eca6fe27c28822456800","ref":"refs/heads/gh-pages","pushedAt":"2024-02-10T00:48:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"hrshdhgd","name":"Harshad","path":"/hrshdhgd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5247075?s=80&v=4"},"commit":{"message":"Deploying to gh-pages from @ monarch-initiative/curate-gpt@5a24e70dbea5c814b8c4c4708c515b5998bdb2ba ๐Ÿš€","shortMessageHtmlLink":"Deploying to gh-pages from @ 5a24e70 ๐Ÿš€"}},{"before":"bd85531addd29a01437f950340768d85617b9e3b","after":null,"ref":"refs/heads/docs","pushedAt":"2024-02-10T00:45:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"hrshdhgd","name":"Harshad","path":"/hrshdhgd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5247075?s=80&v=4"}},{"before":"83f23786f1693cd9ded5a0c99e180bf479ef9216","after":"5a24e70dbea5c814b8c4c4708c515b5998bdb2ba","ref":"refs/heads/main","pushedAt":"2024-02-10T00:45:41.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"hrshdhgd","name":"Harshad","path":"/hrshdhgd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5247075?s=80&v=4"},"commit":{"message":"Merge pull request #29 from monarch-initiative/docs\n\nAdded docs dependencies and `cruft update`","shortMessageHtmlLink":"Merge pull request #29 from monarch-initiative/docs"}},{"before":"da26c9f1676383b7ba456e0e714cfaa2f9375c18","after":"bd85531addd29a01437f950340768d85617b9e3b","ref":"refs/heads/docs","pushedAt":"2024-02-10T00:38:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hrshdhgd","name":"Harshad","path":"/hrshdhgd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5247075?s=80&v=4"},"commit":{"message":"formatted","shortMessageHtmlLink":"formatted"}},{"before":null,"after":"da26c9f1676383b7ba456e0e714cfaa2f9375c18","ref":"refs/heads/docs","pushedAt":"2024-02-10T00:35:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"hrshdhgd","name":"Harshad","path":"/hrshdhgd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5247075?s=80&v=4"},"commit":{"message":"Added docs dependencies and `cruft update`","shortMessageHtmlLink":"Added docs dependencies and cruft update"}},{"before":"bebe6bb6d6982f5138468c21c92f66a5fcefd226","after":"83f23786f1693cd9ded5a0c99e180bf479ef9216","ref":"refs/heads/main","pushedAt":"2024-02-10T00:28:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hrshdhgd","name":"Harshad","path":"/hrshdhgd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5247075?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":null,"after":"7ada3978c45f1fd43b6eb8e5296267c67e7060a1","ref":"refs/heads/subsumption_experiments","pushedAt":"2024-02-08T20:22:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"justaddcoffee","name":"Justin Reese","path":"/justaddcoffee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/150311?s=80&v=4"},"commit":{"message":"Add subsumption command (this should be moved to some module I guess)","shortMessageHtmlLink":"Add subsumption command (this should be moved to some module I guess)"}},{"before":"bebe6bb6d6982f5138468c21c92f66a5fcefd226","after":null,"ref":"refs/heads/23-chat-interface-uses-incorrect-openai-api-key","pushedAt":"2024-02-02T20:54:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"caufieldjh","name":"Harry Caufield","path":"/caufieldjh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7987729?s=80&v=4"}},{"before":null,"after":"bebe6bb6d6982f5138468c21c92f66a5fcefd226","ref":"refs/heads/23-chat-interface-uses-incorrect-openai-api-key","pushedAt":"2024-02-02T20:22:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"caufieldjh","name":"Harry Caufield","path":"/caufieldjh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7987729?s=80&v=4"},"commit":{"message":"no idea","shortMessageHtmlLink":"no idea"}},{"before":null,"after":"4276db1b8feb4a5e2fa09dde8f4b57a276a206bf","ref":"refs/heads/venomx","pushedAt":"2024-01-27T01:53:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"Adding venomx dependency","shortMessageHtmlLink":"Adding venomx dependency"}},{"before":"e760b9177dded0cb009b330b0e73af7cb7f2c0d7","after":"bebe6bb6d6982f5138468c21c92f66a5fcefd226","ref":"refs/heads/main","pushedAt":"2024-01-27T01:27:41.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"no idea","shortMessageHtmlLink":"no idea"}},{"before":"03066a89dd12d7754082e378176a61c217e434f1","after":"e760b9177dded0cb009b330b0e73af7cb7f2c0d7","ref":"refs/heads/main","pushedAt":"2024-01-26T22:37:41.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"cmungall","name":"Chris Mungall","path":"/cmungall","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/50745?s=80&v=4"},"commit":{"message":"Merge pull request #16 from monarch-initiative/docs-selecting-models\n\nAdded documentation on using other models via litellm.","shortMessageHtmlLink":"Merge pull request #16 from monarch-initiative/docs-selecting-models"}},{"before":"f5a5d455ff684bd5af9c22d983596d4c57360ec0","after":"8484f70cc7e0babb4a649c88632b676af7153ece","ref":"refs/heads/docs-selecting-models","pushedAt":"2024-01-17T21:24:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caufieldjh","name":"Harry Caufield","path":"/caufieldjh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7987729?s=80&v=4"},"commit":{"message":"Minor change to the cp command\n\nAs-is, this command copies `stagedb` dir to `db`, which doesn't overwrite any existing chromadb.","shortMessageHtmlLink":"Minor change to the cp command"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUOQe1AA","startCursor":null,"endCursor":null}},"title":"Activity ยท monarch-initiative/curate-gpt"}