pyproject.toml

[build-system]
requires = ['setuptools >= 61.0.0']
build-backend = 'setuptools.build_meta'

[project]
name = 'mne-hfo'
version = "0.3.dev0"
description = 'mne-hfo: HFO estimation from EEG and iEEG data with MNE.'
readme = 'README.md'
license = {file = 'LICENSE'}
requires-python = '~=3.8'
maintainers = [
    {name = 'Adam Li', email = 'adam.li@columbia.edu'},
    {name = 'Patrick Myers', email = 'pemyers27@gmail.com'},
]
keywords = [
    'meg',
    'eeg',
    'ieeg',
    'neuroscience',
    'hfo',
]
classifiers = [
    'Operating System :: Microsoft :: Windows',
    'Operating System :: Unix',
    'Operating System :: MacOS',
    'Programming Language :: Python :: 3 :: Only',
    'Programming Language :: Python :: 3.8',
    'Programming Language :: Python :: 3.9',
    'Programming Language :: Python :: 3.10',
    'Programming Language :: Python :: 3.11',
    'Natural Language :: English',
    'License :: OSI Approved :: BSD License',
    'Intended Audience :: Science/Research',
    'Intended Audience :: Developers',
    'Topic :: Software Development',
    'Topic :: Scientific/Engineering',
]
dependencies = [
    'importlib-resources; python_version<"3.9"',
    'mne >= 1.1',
    'numpy>=1.20',
    'scipy>=1.6',
    'scikit-learn>=1.0',
    'pandas>=1.2',
    'mne-bids>=0.13',
    'matplotlib>=3.3',
    'joblib>=1.0.0',
    'tqdm>=4.59',
]

[project.optional-dependencies]
build = [
    'build',
    'twine',
]
doc = [
    'memory_profiler',
    'numpydoc',
    'pydata-sphinx-theme',
    'PyQt6',
    'sphinx',
    'sphinxcontrib-bibtex',
    'sphinx-copybutton',
    'sphinx-design',
    'sphinx-gallery',
    'sphinx-issues',
    'nbsphinx',
    'pandoc',
    'sphinx-autodoc-typehints',
    'typing-extensions',
    'ipython',
]
style = [
    'bibclean',
    'black',
    'codespell',
    'isort',
    'flake8',
    'mypy',
    'pydocstyle[toml]',
]
test = [
    'mne-bids',
    'pandas',
    'PyQt6',
    'pymatreader',
    'pytest',
    'pytest-cov',
    'openneuro-py',
    'pytest-benchmark',
]
all = [
    'mne-hfo[build]',
    'mne-hfo[doc]',
    'mne-hfo[style]',
    'mne-hfo[test]',
]
full = [
    'mne-hfo[all]',
]

[project.urls]
documentation = 'https://mne.tools/mne-hfo'
source = 'https://github.com/mne-tools/mne-hfo'
tracker = 'https://github.com/mne-tools/mne-hfo/issues'

[tool.setuptools]
include-package-data = false

[tool.setuptools.packages.find]
include = ['mne_hfo*']
exclude = ['mne_hfo*tests']

[tool.setuptools.package-data]
"mne_hfo.iclabel.network" = ["assets/*"]

[tool.black]
line-length = 88
target-version = ['py39']
include = '\.pyi?$'
extend-exclude = '''
(
      __pycache__
    | \.github
    | setup.py
    | doc/
    | examples/
)
'''

[tool.isort]
profile = 'black'
multi_line_output = 3
line_length = 88
py_version = 39
extend_skip_glob = [
    'setup.py',
    'doc/*',
    'examples/*',
]

[tool.pydocstyle]
convention = 'numpy'
ignore-decorators = '(copy_doc|property|.*setter|.*getter)'
match = '^(?!setup|__init__|test_).*\.py'
match-dir = '^mne_hfo.*'
add_ignore = 'D100,D104,D107'

[tool.mypy]
ignore_missing_imports = true
no_site_packages = true

[tool.pytest.ini_options]
minversion = '6.0'
addopts = '--durations 20 --junit-xml=junit-results.xml --verbose'
filterwarnings = []

[tool.coverage.run]
branch = true
cover_pylib = false
omit = [
    '**/__init__.py',
    '**/mne_hfo/_version.py',
    '**/tests/**',
]

[tool.coverage.report]
exclude_lines = [
    'pragma: no cover',
    'if __name__ == .__main__.:',
]
precision = 2