Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Reference correction introduces shifts in PSDs #57

Open
wronk opened this issue Jun 28, 2017 · 0 comments
Open

Reference correction introduces shifts in PSDs #57

wronk opened this issue Jun 28, 2017 · 0 comments

Comments

@wronk
Copy link

wronk commented Jun 28, 2017

For some HCP subjects (~1/2 of the 20 I'm testing), hcp.preprocessing.apply_ref_correction seems to be introducing significant changes in the across-sensor average PSD. This came up when trying to classifying resting state from motor trials. Resting state runs seemed to have wide-band increases in power after ref correction. Plots examples below are an average example of this effect -- some are worse, some are better.

  • bad channels and reference channels were removed prior to PSD calculation for all plots below
  • Annotations added to raw files using hcp.read_annots. (PSD now respects these annotations 4345)

PSD on raw unprocessed data:
105923

PSD on raw data + BP filtering (0.1-55Hz, fir filter, 2s window):
105923

PSD on raw data + SSP projectors (exact same projectors used for every run):
105923

PSD on raw data + hcp.preprocessing.apply_ref_correction:
105923

@wronk wronk changed the title Reference correction introducing shifts in PSDs Reference correction introduces shifts in PSDs Jun 28, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant