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Installation Problem mlpy #145

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Khalifa1997 opened this issue Mar 19, 2020 · 1 comment
Open

Installation Problem mlpy #145

Khalifa1997 opened this issue Mar 19, 2020 · 1 comment

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@Khalifa1997
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Khalifa1997 commented Mar 19, 2020 •
edited

I get this error when I run make run

/usr/bin/python3 run.py -c test.yaml -s "" -o "INFO"
run.py:35: YAMLLoadWarning: calling yaml.load_all() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details.
  base_param = list(yaml.load_all(stream))[0]
run.py:38: YAMLLoadWarning: calling yaml.load_all() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details.
  driver_param = list(yaml.load_all(stream))[0]
run.py:47: YAMLLoadWarning: calling yaml.load_all() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details.
  for method in method_config:
[INFO] Script: methods/mlpy/pca.py
Traceback (most recent call last):
  File "run.py", line 115, in <module>
    run(args.config, args.lib, args.methods, args.loglevel)
  File "run.py", line 70, in run
    module = Loader.ImportModuleFromPath(values["script"])
  File "/home/ahmed/Desktop/benchmarks/util/util.py", line 54, in ImportModuleFromPath
    module = imp.load_module(modName, *tup)
  File "/usr/lib/python3.6/imp.py", line 235, in load_module
    return load_source(name, filename, file)
  File "/usr/lib/python3.6/imp.py", line 172, in load_source
    module = _load(spec)
  File "<frozen importlib._bootstrap>", line 684, in _load
  File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 678, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "methods/mlpy/pca.py", line 18, in <module>
    import mlpy
ModuleNotFoundError: No module named 'mlpy'
Makefile:159: recipe for target '.run' failed
make: *** [.run] Error 1
```


Also whenever I try and install mlpy using pip3 I get this error message


```
(base) ahmed@ahmed-Lenovo-ideapad-520-15IKB:~/Desktop/benchmarks$ pip3 install mlpy
Collecting mlpy
  Using cached https://files.pythonhosted.org/packages/93/3c/be8ccff2aa3e5ce3b922cff026aadc62d3a671168e42616b1e0b8eccba12/mlpy-0.1.0.tar.gz
Collecting numpy>=1.6.2 (from mlpy)
  Using cached https://files.pythonhosted.org/packages/07/08/a549ba8b061005bb629b76adc000f3caaaf881028b963c2e18f811c6edc1/numpy-1.18.2-cp36-cp36m-manylinux1_x86_64.whl
Collecting scipy>=0.11 (from mlpy)
  Using cached https://files.pythonhosted.org/packages/dc/29/162476fd44203116e7980cfbd9352eef9db37c49445d1fec35509022f6aa/scipy-1.4.1-cp36-cp36m-manylinux1_x86_64.whl
Collecting matplotlib (from mlpy)
  Downloading https://files.pythonhosted.org/packages/93/4b/52da6b1523d5139d04e02d9e26ceda6146b48f2a4e5d2abfdf1c7bac8c40/matplotlib-3.2.1-cp36-cp36m-manylinux1_x86_64.whl (12.4MB)
    100% |████████████████████████████████| 12.4MB 145kB/s 
Collecting scikit-learn (from mlpy)
  Using cached https://files.pythonhosted.org/packages/5e/d8/312e03adf4c78663e17d802fe2440072376fee46cada1404f1727ed77a32/scikit_learn-0.22.2.post1-cp36-cp36m-manylinux1_x86_64.whl
Collecting six>=1.9.0 (from mlpy)
  Using cached https://files.pythonhosted.org/packages/65/eb/1f97cb97bfc2390a276969c6fae16075da282f5058082d4cb10c6c5c1dba/six-1.14.0-py2.py3-none-any.whl
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from matplotlib->mlpy)
  Using cached https://files.pythonhosted.org/packages/5d/bc/1e58593167fade7b544bfe9502a26dc860940a79ab306e651e7f13be68c2/pyparsing-2.4.6-py2.py3-none-any.whl
Collecting cycler>=0.10 (from matplotlib->mlpy)
  Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
Collecting python-dateutil>=2.1 (from matplotlib->mlpy)
  Using cached https://files.pythonhosted.org/packages/d4/70/d60450c3dd48ef87586924207ae8907090de0b306af2bce5d134d78615cb/python_dateutil-2.8.1-py2.py3-none-any.whl
Collecting kiwisolver>=1.0.1 (from matplotlib->mlpy)
  Using cached https://files.pythonhosted.org/packages/f8/a1/5742b56282449b1c0968197f63eae486eca2c35dcd334bab75ad524e0de1/kiwisolver-1.1.0-cp36-cp36m-manylinux1_x86_64.whl
Collecting joblib>=0.11 (from scikit-learn->mlpy)
  Using cached https://files.pythonhosted.org/packages/28/5c/cf6a2b65a321c4a209efcdf64c2689efae2cb62661f8f6f4bb28547cf1bf/joblib-0.14.1-py2.py3-none-any.whl
Collecting setuptools (from kiwisolver>=1.0.1->matplotlib->mlpy)
  Using cached https://files.pythonhosted.org/packages/70/b8/b23170ddda9f07c3444d49accde49f2b92f97bb2f2ebc312618ef12e4bd6/setuptools-46.0.0-py3-none-any.whl
Building wheels for collected packages: mlpy
  Running setup.py bdist_wheel for mlpy ... error
  Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-6tdvjugp/mlpy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpik6xwqw9pip-wheel- --python-tag cp36:
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-3.6
  creating build/lib.linux-x86_64-3.6/mlpy
  copying mlpy/__init__.py -> build/lib.linux-x86_64-3.6/mlpy
  running egg_info
  writing mlpy.egg-info/PKG-INFO
  writing dependency_links to mlpy.egg-info/dependency_links.txt
  writing requirements to mlpy.egg-info/requires.txt
  writing top-level names to mlpy.egg-info/top_level.txt
  reading manifest file 'mlpy.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '*.sdf' found under directory 'mlpy/libs'
  warning: no previously-included files matching '*.sln' found under directory 'mlpy/libs'
  warning: no previously-included files matching '*.suo' found under directory 'mlpy/libs'
  warning: no previously-included files matching '*.exp' found under directory 'mlpy/libs'
  warning: no previously-included files matching '*.ilk' found under directory 'mlpy/libs'
  warning: no previously-included files matching '*.lib' found under directory 'mlpy/libs'
  warning: no previously-included files matching '*pdb' found under directory 'mlpy/libs'
  warning: no previously-included files matching '__pycache__' found under directory '*'
  no previously-included directories found matching 'mlpy/libs/classifier/classifier'
  no previously-included directories found matching 'mlpy/libs/hmmc/hmmc'
  no previously-included directories found matching 'docs/build'
  no previously-included directories found matching 'docs/generated'
  writing manifest file 'mlpy.egg-info/SOURCES.txt'
  creating build/lib.linux-x86_64-3.6/mlpy/agents
  copying mlpy/agents/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/agents
  copying mlpy/agents/fsm.py -> build/lib.linux-x86_64-3.6/mlpy/agents
  copying mlpy/agents/modules.py -> build/lib.linux-x86_64-3.6/mlpy/agents
  copying mlpy/agents/world.py -> build/lib.linux-x86_64-3.6/mlpy/agents
  creating build/lib.linux-x86_64-3.6/mlpy/auxiliary
  copying mlpy/auxiliary/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
  copying mlpy/auxiliary/array.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
  copying mlpy/auxiliary/datasets.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
  copying mlpy/auxiliary/datastructs.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
  copying mlpy/auxiliary/io.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
  copying mlpy/auxiliary/misc.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
  copying mlpy/auxiliary/plotting.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
  creating build/lib.linux-x86_64-3.6/mlpy/cluster
  copying mlpy/cluster/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/cluster
  copying mlpy/cluster/vq.py -> build/lib.linux-x86_64-3.6/mlpy/cluster
  creating build/lib.linux-x86_64-3.6/mlpy/constants
  copying mlpy/constants/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/constants
  copying mlpy/constants/_constants.py -> build/lib.linux-x86_64-3.6/mlpy/constants
  creating build/lib.linux-x86_64-3.6/mlpy/environments
  copying mlpy/environments/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/environments
  copying mlpy/environments/gridworld.py -> build/lib.linux-x86_64-3.6/mlpy/environments
  copying mlpy/environments/nao.py -> build/lib.linux-x86_64-3.6/mlpy/environments
  creating build/lib.linux-x86_64-3.6/mlpy/environments/webots
  creating build/lib.linux-x86_64-3.6/mlpy/environments/webots/controllers
  creating build/lib.linux-x86_64-3.6/mlpy/environments/webots/controllers/serverc
  copying mlpy/environments/webots/controllers/serverc/serverc.py -> build/lib.linux-x86_64-3.6/mlpy/environments/webots/controllers/serverc
  creating build/lib.linux-x86_64-3.6/mlpy/experiments
  copying mlpy/experiments/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/experiments
  copying mlpy/experiments/task.py -> build/lib.linux-x86_64-3.6/mlpy/experiments
  creating build/lib.linux-x86_64-3.6/mlpy/knowledgerep
  copying mlpy/knowledgerep/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep
  creating build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
  copying mlpy/knowledgerep/cbr/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
  copying mlpy/knowledgerep/cbr/engine.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
  copying mlpy/knowledgerep/cbr/features.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
  copying mlpy/knowledgerep/cbr/methods.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
  copying mlpy/knowledgerep/cbr/similarity.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
  creating build/lib.linux-x86_64-3.6/mlpy/learners
  copying mlpy/learners/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/learners
  creating build/lib.linux-x86_64-3.6/mlpy/learners/offline
  copying mlpy/learners/offline/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/learners/offline
  copying mlpy/learners/offline/irl.py -> build/lib.linux-x86_64-3.6/mlpy/learners/offline
  creating build/lib.linux-x86_64-3.6/mlpy/learners/online
  copying mlpy/learners/online/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/learners/online
  copying mlpy/learners/online/rl.py -> build/lib.linux-x86_64-3.6/mlpy/learners/online
  creating build/lib.linux-x86_64-3.6/mlpy/libs
  copying mlpy/libs/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/libs
  copying mlpy/libs/classifier.pyd -> build/lib.linux-x86_64-3.6/mlpy/libs
  copying mlpy/libs/hmmc.pyd -> build/lib.linux-x86_64-3.6/mlpy/libs
  copying mlpy/libs/noconflict.py -> build/lib.linux-x86_64-3.6/mlpy/libs
  creating build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/array_helper.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/array_helper.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/c45tree.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/c45tree.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/classifier.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/classifier.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/classifier_module.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/classifier_module.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/coord.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/coord.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/random.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  copying mlpy/libs/classifier/random.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
  creating build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
  copying mlpy/libs/hmmc/hmm.c -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
  copying mlpy/libs/hmmc/hmm.h -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
  copying mlpy/libs/hmmc/hmmc_module.c -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
  copying mlpy/libs/hmmc/hmmc_module.h -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
  creating build/lib.linux-x86_64-3.6/mlpy/mdp
  copying mlpy/mdp/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
  copying mlpy/mdp/discrete.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
  copying mlpy/mdp/distrib.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
  copying mlpy/mdp/stateaction.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
  creating build/lib.linux-x86_64-3.6/mlpy/mdp/continuous
  copying mlpy/mdp/continuous/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/mdp/continuous
  copying mlpy/mdp/continuous/casml.py -> build/lib.linux-x86_64-3.6/mlpy/mdp/continuous
  creating build/lib.linux-x86_64-3.6/mlpy/modules
  copying mlpy/modules/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/modules
  copying mlpy/modules/patterns.py -> build/lib.linux-x86_64-3.6/mlpy/modules
  creating build/lib.linux-x86_64-3.6/mlpy/optimize
  copying mlpy/optimize/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/optimize
  copying mlpy/optimize/algorithms.py -> build/lib.linux-x86_64-3.6/mlpy/optimize
  copying mlpy/optimize/utils.py -> build/lib.linux-x86_64-3.6/mlpy/optimize
  creating build/lib.linux-x86_64-3.6/mlpy/planners
  copying mlpy/planners/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/planners
  copying mlpy/planners/discrete.py -> build/lib.linux-x86_64-3.6/mlpy/planners
  creating build/lib.linux-x86_64-3.6/mlpy/planners/explorers
  copying mlpy/planners/explorers/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/planners/explorers
  copying mlpy/planners/explorers/discrete.py -> build/lib.linux-x86_64-3.6/mlpy/planners/explorers
  creating build/lib.linux-x86_64-3.6/mlpy/search
  copying mlpy/search/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/search
  copying mlpy/search/informed.py -> build/lib.linux-x86_64-3.6/mlpy/search
  creating build/lib.linux-x86_64-3.6/mlpy/stats
  copying mlpy/stats/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/stats
  copying mlpy/stats/_conditional.py -> build/lib.linux-x86_64-3.6/mlpy/stats
  copying mlpy/stats/_discrete.py -> build/lib.linux-x86_64-3.6/mlpy/stats
  copying mlpy/stats/_multivariate.py -> build/lib.linux-x86_64-3.6/mlpy/stats
  copying mlpy/stats/_stats.py -> build/lib.linux-x86_64-3.6/mlpy/stats
  creating build/lib.linux-x86_64-3.6/mlpy/stats/dbn
  copying mlpy/stats/dbn/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/stats/dbn
  copying mlpy/stats/dbn/hmm.py -> build/lib.linux-x86_64-3.6/mlpy/stats/dbn
  creating build/lib.linux-x86_64-3.6/mlpy/stats/models
  copying mlpy/stats/models/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/stats/models
  copying mlpy/stats/models/_basic.py -> build/lib.linux-x86_64-3.6/mlpy/stats/models
  copying mlpy/stats/models/mixture.py -> build/lib.linux-x86_64-3.6/mlpy/stats/models
  creating build/lib.linux-x86_64-3.6/mlpy/tools
  copying mlpy/tools/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/tools
  copying mlpy/tools/configuration.py -> build/lib.linux-x86_64-3.6/mlpy/tools
  copying mlpy/tools/log.py -> build/lib.linux-x86_64-3.6/mlpy/tools
  copying mlpy/tools/misc.py -> build/lib.linux-x86_64-3.6/mlpy/tools
  running build_ext
  building 'classifier' extension
  creating build/temp.linux-x86_64-3.6
  creating build/temp.linux-x86_64-3.6/mlpy
  creating build/temp.linux-x86_64-3.6/mlpy/libs
  creating build/temp.linux-x86_64-3.6/mlpy/libs/classifier
  x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/ahmed/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c mlpy/libs/classifier/classifier_module.cc -o build/temp.linux-x86_64-3.6/mlpy/libs/classifier/classifier_module.o
  mlpy/libs/classifier/classifier_module.cc: In function ‘PyObject* initclassifier()’:
  mlpy/libs/classifier/classifier_module.cc:33:7: error: ‘Py_InitModule3’ was not declared in this scope
     m = Py_InitModule3("classifier", ClassifierMethods, "Classification module");
         ^~~~~~~~~~~~~~
  mlpy/libs/classifier/classifier_module.cc:33:7: note: suggested alternative: ‘Py_Initialize’
     m = Py_InitModule3("classifier", ClassifierMethods, "Classification module");
         ^~~~~~~~~~~~~~
         Py_Initialize
  mlpy/libs/classifier/classifier_module.cc:34:18: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
     if (m == NULL) return;
                    ^~~~~~
  mlpy/libs/classifier/classifier_module.cc:37:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
      return;
      ^~~~~~
  mlpy/libs/classifier/classifier_module.cc:42:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
      return;
      ^~~~~~
  mlpy/libs/classifier/classifier_module.cc:48:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
      return;
      ^~~~~~
  mlpy/libs/classifier/classifier_module.cc:53:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
      return;
      ^~~~~~
  mlpy/libs/classifier/classifier_module.cc:58:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
      return;
      ^~~~~~
  mlpy/libs/classifier/classifier_module.cc:63:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
      return;
      ^~~~~~
  mlpy/libs/classifier/classifier_module.cc:68:2: warning: control reaches end of non-void function [-Wreturn-type]
    }
    ^
  error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
  
  ----------------------------------------
  Failed building wheel for mlpy
  Running setup.py clean for mlpy
Failed to build mlpy
Installing collected packages: numpy, scipy, pyparsing, six, cycler, python-dateutil, setuptools, kiwisolver, matplotlib, joblib, scikit-learn, mlpy
  Running setup.py install for mlpy ... error
    Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-6tdvjugp/mlpy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-jwzm9k94-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.6
    creating build/lib.linux-x86_64-3.6/mlpy
    copying mlpy/__init__.py -> build/lib.linux-x86_64-3.6/mlpy
    running egg_info
    writing mlpy.egg-info/PKG-INFO
    writing dependency_links to mlpy.egg-info/dependency_links.txt
    writing requirements to mlpy.egg-info/requires.txt
    writing top-level names to mlpy.egg-info/top_level.txt
    reading manifest file 'mlpy.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    warning: no previously-included files matching '*.sdf' found under directory 'mlpy/libs'
    warning: no previously-included files matching '*.sln' found under directory 'mlpy/libs'
    warning: no previously-included files matching '*.suo' found under directory 'mlpy/libs'
    warning: no previously-included files matching '*.exp' found under directory 'mlpy/libs'
    warning: no previously-included files matching '*.ilk' found under directory 'mlpy/libs'
    warning: no previously-included files matching '*.lib' found under directory 'mlpy/libs'
    warning: no previously-included files matching '*pdb' found under directory 'mlpy/libs'
    warning: no previously-included files matching '__pycache__' found under directory '*'
    no previously-included directories found matching 'mlpy/libs/classifier/classifier'
    no previously-included directories found matching 'mlpy/libs/hmmc/hmmc'
    no previously-included directories found matching 'docs/build'
    no previously-included directories found matching 'docs/generated'
    writing manifest file 'mlpy.egg-info/SOURCES.txt'
    creating build/lib.linux-x86_64-3.6/mlpy/agents
    copying mlpy/agents/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/agents
    copying mlpy/agents/fsm.py -> build/lib.linux-x86_64-3.6/mlpy/agents
    copying mlpy/agents/modules.py -> build/lib.linux-x86_64-3.6/mlpy/agents
    copying mlpy/agents/world.py -> build/lib.linux-x86_64-3.6/mlpy/agents
    creating build/lib.linux-x86_64-3.6/mlpy/auxiliary
    copying mlpy/auxiliary/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
    copying mlpy/auxiliary/array.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
    copying mlpy/auxiliary/datasets.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
    copying mlpy/auxiliary/datastructs.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
    copying mlpy/auxiliary/io.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
    copying mlpy/auxiliary/misc.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
    copying mlpy/auxiliary/plotting.py -> build/lib.linux-x86_64-3.6/mlpy/auxiliary
    creating build/lib.linux-x86_64-3.6/mlpy/cluster
    copying mlpy/cluster/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/cluster
    copying mlpy/cluster/vq.py -> build/lib.linux-x86_64-3.6/mlpy/cluster
    creating build/lib.linux-x86_64-3.6/mlpy/constants
    copying mlpy/constants/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/constants
    copying mlpy/constants/_constants.py -> build/lib.linux-x86_64-3.6/mlpy/constants
    creating build/lib.linux-x86_64-3.6/mlpy/environments
    copying mlpy/environments/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/environments
    copying mlpy/environments/gridworld.py -> build/lib.linux-x86_64-3.6/mlpy/environments
    copying mlpy/environments/nao.py -> build/lib.linux-x86_64-3.6/mlpy/environments
    creating build/lib.linux-x86_64-3.6/mlpy/environments/webots
    creating build/lib.linux-x86_64-3.6/mlpy/environments/webots/controllers
    creating build/lib.linux-x86_64-3.6/mlpy/environments/webots/controllers/serverc
    copying mlpy/environments/webots/controllers/serverc/serverc.py -> build/lib.linux-x86_64-3.6/mlpy/environments/webots/controllers/serverc
    creating build/lib.linux-x86_64-3.6/mlpy/experiments
    copying mlpy/experiments/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/experiments
    copying mlpy/experiments/task.py -> build/lib.linux-x86_64-3.6/mlpy/experiments
    creating build/lib.linux-x86_64-3.6/mlpy/knowledgerep
    copying mlpy/knowledgerep/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep
    creating build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
    copying mlpy/knowledgerep/cbr/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
    copying mlpy/knowledgerep/cbr/engine.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
    copying mlpy/knowledgerep/cbr/features.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
    copying mlpy/knowledgerep/cbr/methods.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
    copying mlpy/knowledgerep/cbr/similarity.py -> build/lib.linux-x86_64-3.6/mlpy/knowledgerep/cbr
    creating build/lib.linux-x86_64-3.6/mlpy/learners
    copying mlpy/learners/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/learners
    creating build/lib.linux-x86_64-3.6/mlpy/learners/offline
    copying mlpy/learners/offline/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/learners/offline
    copying mlpy/learners/offline/irl.py -> build/lib.linux-x86_64-3.6/mlpy/learners/offline
    creating build/lib.linux-x86_64-3.6/mlpy/learners/online
    copying mlpy/learners/online/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/learners/online
    copying mlpy/learners/online/rl.py -> build/lib.linux-x86_64-3.6/mlpy/learners/online
    creating build/lib.linux-x86_64-3.6/mlpy/libs
    copying mlpy/libs/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/libs
    copying mlpy/libs/classifier.pyd -> build/lib.linux-x86_64-3.6/mlpy/libs
    copying mlpy/libs/hmmc.pyd -> build/lib.linux-x86_64-3.6/mlpy/libs
    copying mlpy/libs/noconflict.py -> build/lib.linux-x86_64-3.6/mlpy/libs
    creating build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/array_helper.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/array_helper.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/c45tree.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/c45tree.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/classifier.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/classifier.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/classifier_module.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/classifier_module.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/coord.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/coord.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/random.cc -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    copying mlpy/libs/classifier/random.h -> build/lib.linux-x86_64-3.6/mlpy/libs/classifier
    creating build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
    copying mlpy/libs/hmmc/hmm.c -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
    copying mlpy/libs/hmmc/hmm.h -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
    copying mlpy/libs/hmmc/hmmc_module.c -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
    copying mlpy/libs/hmmc/hmmc_module.h -> build/lib.linux-x86_64-3.6/mlpy/libs/hmmc
    creating build/lib.linux-x86_64-3.6/mlpy/mdp
    copying mlpy/mdp/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
    copying mlpy/mdp/discrete.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
    copying mlpy/mdp/distrib.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
    copying mlpy/mdp/stateaction.py -> build/lib.linux-x86_64-3.6/mlpy/mdp
    creating build/lib.linux-x86_64-3.6/mlpy/mdp/continuous
    copying mlpy/mdp/continuous/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/mdp/continuous
    copying mlpy/mdp/continuous/casml.py -> build/lib.linux-x86_64-3.6/mlpy/mdp/continuous
    creating build/lib.linux-x86_64-3.6/mlpy/modules
    copying mlpy/modules/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/modules
    copying mlpy/modules/patterns.py -> build/lib.linux-x86_64-3.6/mlpy/modules
    creating build/lib.linux-x86_64-3.6/mlpy/optimize
    copying mlpy/optimize/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/optimize
    copying mlpy/optimize/algorithms.py -> build/lib.linux-x86_64-3.6/mlpy/optimize
    copying mlpy/optimize/utils.py -> build/lib.linux-x86_64-3.6/mlpy/optimize
    creating build/lib.linux-x86_64-3.6/mlpy/planners
    copying mlpy/planners/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/planners
    copying mlpy/planners/discrete.py -> build/lib.linux-x86_64-3.6/mlpy/planners
    creating build/lib.linux-x86_64-3.6/mlpy/planners/explorers
    copying mlpy/planners/explorers/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/planners/explorers
    copying mlpy/planners/explorers/discrete.py -> build/lib.linux-x86_64-3.6/mlpy/planners/explorers
    creating build/lib.linux-x86_64-3.6/mlpy/search
    copying mlpy/search/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/search
    copying mlpy/search/informed.py -> build/lib.linux-x86_64-3.6/mlpy/search
    creating build/lib.linux-x86_64-3.6/mlpy/stats
    copying mlpy/stats/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/stats
    copying mlpy/stats/_conditional.py -> build/lib.linux-x86_64-3.6/mlpy/stats
    copying mlpy/stats/_discrete.py -> build/lib.linux-x86_64-3.6/mlpy/stats
    copying mlpy/stats/_multivariate.py -> build/lib.linux-x86_64-3.6/mlpy/stats
    copying mlpy/stats/_stats.py -> build/lib.linux-x86_64-3.6/mlpy/stats
    creating build/lib.linux-x86_64-3.6/mlpy/stats/dbn
    copying mlpy/stats/dbn/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/stats/dbn
    copying mlpy/stats/dbn/hmm.py -> build/lib.linux-x86_64-3.6/mlpy/stats/dbn
    creating build/lib.linux-x86_64-3.6/mlpy/stats/models
    copying mlpy/stats/models/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/stats/models
    copying mlpy/stats/models/_basic.py -> build/lib.linux-x86_64-3.6/mlpy/stats/models
    copying mlpy/stats/models/mixture.py -> build/lib.linux-x86_64-3.6/mlpy/stats/models
    creating build/lib.linux-x86_64-3.6/mlpy/tools
    copying mlpy/tools/__init__.py -> build/lib.linux-x86_64-3.6/mlpy/tools
    copying mlpy/tools/configuration.py -> build/lib.linux-x86_64-3.6/mlpy/tools
    copying mlpy/tools/log.py -> build/lib.linux-x86_64-3.6/mlpy/tools
    copying mlpy/tools/misc.py -> build/lib.linux-x86_64-3.6/mlpy/tools
    running build_ext
    building 'classifier' extension
    creating build/temp.linux-x86_64-3.6
    creating build/temp.linux-x86_64-3.6/mlpy
    creating build/temp.linux-x86_64-3.6/mlpy/libs
    creating build/temp.linux-x86_64-3.6/mlpy/libs/classifier
    x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/ahmed/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c mlpy/libs/classifier/classifier_module.cc -o build/temp.linux-x86_64-3.6/mlpy/libs/classifier/classifier_module.o
    mlpy/libs/classifier/classifier_module.cc: In function ‘PyObject* initclassifier()’:
    mlpy/libs/classifier/classifier_module.cc:33:7: error: ‘Py_InitModule3’ was not declared in this scope
       m = Py_InitModule3("classifier", ClassifierMethods, "Classification module");
           ^~~~~~~~~~~~~~
    mlpy/libs/classifier/classifier_module.cc:33:7: note: suggested alternative: ‘Py_Initialize’
       m = Py_InitModule3("classifier", ClassifierMethods, "Classification module");
           ^~~~~~~~~~~~~~
           Py_Initialize
    mlpy/libs/classifier/classifier_module.cc:34:18: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
       if (m == NULL) return;
                      ^~~~~~
    mlpy/libs/classifier/classifier_module.cc:37:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
        return;
        ^~~~~~
    mlpy/libs/classifier/classifier_module.cc:42:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
        return;
        ^~~~~~
    mlpy/libs/classifier/classifier_module.cc:48:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
        return;
        ^~~~~~
    mlpy/libs/classifier/classifier_module.cc:53:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
        return;
        ^~~~~~
    mlpy/libs/classifier/classifier_module.cc:58:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
        return;
        ^~~~~~
    mlpy/libs/classifier/classifier_module.cc:63:4: error: return-statement with no value, in function returning ‘PyObject* {aka _object*}’ [-fpermissive]
        return;
        ^~~~~~
    mlpy/libs/classifier/classifier_module.cc:68:2: warning: control reaches end of non-void function [-Wreturn-type]
      }
      ^
    error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    
    ----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-6tdvjugp/mlpy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-jwzm9k94-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-6tdvjugp/mlpy/



```
@Khalifa1997 Khalifa1997 changed the title Installation Problem Installation Problem mlpy Mar 19, 2020
@zoq
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zoq commented Mar 20, 2020

Setting everything up can be quite tricky, is there any chance you could use the install script: https://github.com/mlpack/benchmarks/blob/master/libraries/install_all.sh in the https://github.com/mlpack/benchmarks/blob/master/libraries/ folder?

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@zoq @Khalifa1997